MD12G1064700.v1.1

BEST Arabidopsis thaliana protein match is nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000095
Physical Location & Seq
Forward (+)
7597743 .. 7601781
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1064700.v1.1.491

Sequence Viewer

Length: 1425 bp
ATGCAGCTCGATTCAAAGTGTGATTACAACTCGAGAAAGAGAAAAGAAAATAAGTATGACTACAACTTGGCAGACCGAATCAGTGAGTTGACTGATGAACTTCTTGTTAGTTTACTGACCCTCTTGCCGCTAAAGGAAGCAGCAGCTACTAGTATCCTTTCTAAGCGATGGCATTATGTGTGGCGGTATGTGTTGGCATCTACAAGGACTCTTAACTTTGATGCCGGGAAAACATTATGCAATTTGATTGACCTCAATCGAGACGAACGAGAACAGAAAATCTGTAAGTATGTTGATTGGGTGAATAGTGTGGTGGAGCAGCATACTTGGCCAAACGTTGAACGATTCAGAGTTGCTTTTGATTTAGATGATAGGTTTTCAAATTCCATTAATAAATGGATTCAATTTGCACTGAAAAAGAGAGCTCAAGTTCTTGAGTTGGACTTCTCAGAAGATGGTGTTTATCGTCGACGGAAATCATGCTATAATTTTCCCCATGAACTTTTAGGTATTGAAAGAGGCTCTGCTTCTACAGCCTTGTATTGTGATATTCTGAGCCTAAACCCTTGTGTATACCTTGGCTTTAAGTCACTCAAAGTTCTTCATTTCAGTTATGTTGATGTGGGTCAAGAAGTTCTTGAATACTTCTTATCTAATTGTCCAGTTCTTGAACGATTATCAGTGTTCCATGCCCCAAATTTGTTAAATCTAAGGGTTGTTGGTCCATCAATTGCATTGAAGTGCTTAGATATTGAACGATGTGGAAATATTGAAAGCGTTGAGATTTGTAATGCAAACCTTGTTTCATTTAATTATGTTGGAAATGAGTTCCACTTGCTTGTTAGGAATGTACCGCGGCTTAGTCAGGTATCCATCTCTGAGAACTGTATCTGCAATAATTTCATAGAGGTAGTCTTCACCCAACTTTCGGGGTGTCTTTCTCATCTAGAGATTCTCAAACTGACTGGTGAAGAAATAGTGTCGTACAAGAGGGATCGAGTATTTCCTATACTAGCAAATCTAAAGCATTTGGAATTAATAATGGGAGAAGATGATGCTTCTGCTCTTCTTCAACTAACTTGCTTCATGAGGGCATCTCCTTGCTTGCACAGACTTGTGTTATACTTGAAGAAGGAGTACGCAACATCCAAGAGACGGGAAATAAAATATAAGAAGGCCCCCAAATGCTTCCATAATCACCTCAAGGTATTGGAACTGGTAGGGTATGTTGGTCACACGAGTGAGTTAGAACTTGTCAAGTTCTTTGCAAAGACTGCTGTTAAACTGGAGAAAATTGTGATGAAAGGAAACGAGGAGGACCAACAACAACAACAACAACAACAAAGCCTTTTCCCACTAAGTGGGGTCGGCTATATGAATCCTAGAACGCCATTGCGCTCGGTTTTGTGTCATGTCCTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

54.79

Weight (kDa)

8.54

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 107 - 446 1.1e-37 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 131 - 372 2.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 393 - 433 1.2e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1361
AccI GTMKAC 2 cut(s) 469, 573
AccII CGCG 1 cut(s) 856
AciI CCGC 4 cut(s) 128, 184, 854, 856
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 1002
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 2 cut(s) 382, 697
AdeI CACNNNGTG 1 cut(s) 1361
AfaI GTAC 3 cut(s) 852, 986, 1139
AfiI CCNNNNNNNGG 3 cut(s) 928, 1155, 1361
AhlI ACTAGT 1 cut(s) 149
AleI CACNNNNGTG 1 cut(s) 1239
AluBI AGCT 3 cut(s) 7, 146, 425
AluI AGCT 3 cut(s) 7, 146, 425
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 255, 1147
AlwI GGATC 1 cut(s) 1002
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 329, 1176
ApeKI GCWGC 4 cut(s) 4, 140, 143, 319
ApoI RAATTY 2 cut(s) 382, 697
AseI ATTAAT 2 cut(s) 390, 1037
AspLEI GCGC 1 cut(s) 1398
AspS9I GGNCC 3 cut(s) 722, 1177, 1318
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 4 cut(s) 313, 910, 980, 1190
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 722, 1318
BalI TGGCCA 1 cut(s) 331
BanII GRGCYC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 1121, 1153
BauI CACGAG 1 cut(s) 1237
BbsI GAAGAC 1 cut(s) 907
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 4 cut(s) 16, 152, 155, 331
BccI CCATC 4 cut(s) 162, 449, 733, 881
BciVI GTATCC 2 cut(s) 164, 880
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 255, 1147
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 4 cut(s) 150, 947, 1013, 1383
BfmI CTRYAG 1 cut(s) 531
BfuI GTATCC 2 cut(s) 164, 880
BisI GCNGC 6 cut(s) 5, 128, 141, 144, 320, 857
BlsI GCNGC 6 cut(s) 6, 129, 142, 145, 321, 858
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 722, 1318
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 722, 1177, 1318
BmiI GGNNCC 1 cut(s) 1179
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 4 cut(s) 206, 211, 1045, 1103
BpiI GAAGAC 1 cut(s) 907
BplI GAGNNNNNCTC 2 cut(s) 1081, 1113
BpmI CTGGAG 1 cut(s) 1307
BpuEI CTTGAG 3 cut(s) 411, 455, 1187
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 577, 854
Bsc4I CCNNNNNNNGG 3 cut(s) 928, 1155, 1361
Bse1I ACTGG 4 cut(s) 662, 970, 1221, 1290
Bse3DI GCAATG 1 cut(s) 1391
BseDI CCNNGG 2 cut(s) 577, 854
BseGI GGATG 1 cut(s) 1145
BseLI CCNNNNNNNGG 3 cut(s) 928, 1155, 1361
BseMI GCAATG 1 cut(s) 1391
BseMII CTCAG 3 cut(s) 462, 545, 870
BseNI ACTGG 4 cut(s) 662, 970, 1221, 1290
BseRI GAGGAG 1 cut(s) 1328
BseXI GCAGC 4 cut(s) 16, 152, 155, 331
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 331, 1178
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 928, 1155, 1361
BsmAI GTCTC 2 cut(s) 255, 1147
BsmBI CGTCTC 2 cut(s) 255, 1147
BsnI GGCC 2 cut(s) 331, 1178
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 1 cut(s) 994
BspACI CCGC 4 cut(s) 128, 184, 854, 856
BspANI GGCC 2 cut(s) 331, 1178
BspCNI CTCAG 3 cut(s) 461, 546, 871
BspFNI CGCG 1 cut(s) 856
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 1 cut(s) 1179
BspPI GGATC 1 cut(s) 1002
BspQI GCTCTTC 1 cut(s) 1071
BsrDI GCAATG 1 cut(s) 1391
BsrI ACTGG 4 cut(s) 662, 970, 1221, 1290
BssECI CCNNGG 2 cut(s) 577, 854
BssMI GATC 1 cut(s) 994
BssNAI GTATAC 1 cut(s) 574
BssSI CACGAG 1 cut(s) 1237
BssT1I CCWWGG 1 cut(s) 577
Bst1107I GTATAC 1 cut(s) 574
Bst2BI CACGAG 1 cut(s) 1237
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 1 cut(s) 1071
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstC8I GCNNGC 1 cut(s) 1106
BstDEI CTNAG 8 cut(s) 162, 448, 554, 710, 745, 860, 879, 1358
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 1 cut(s) 1145
BstFNI CGCG 1 cut(s) 856
BstHHI GCGC 1 cut(s) 1398
BstKTI GATC 1 cut(s) 997
BstMAI GTCTC 2 cut(s) 255, 1147
BstMBI GATC 1 cut(s) 994
BstMWI GCNNNNNNNGC 3 cut(s) 328, 533, 1274
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 4 cut(s) 16, 152, 155, 331
BstV2I GAAGAC 1 cut(s) 907
BstZ17I GTATAC 1 cut(s) 574
BsuI GTATCC 2 cut(s) 164, 880
BsuRI GGCC 2 cut(s) 331, 1178
BtgI CCRYGG 1 cut(s) 854
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 1145
BtsIMutI CAGTG 3 cut(s) 88, 410, 687
Cac8I GCNNGC 1 cut(s) 1106
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 1 cut(s) 1398
Cfr13I GGNCC 3 cut(s) 722, 1177, 1318
Cfr42I CCGCGG 1 cut(s) 857
Csp6I GTAC 3 cut(s) 851, 985, 1138
CviAII CATG 5 cut(s) 480, 497, 689, 1087, 1412
CviQI GTAC 3 cut(s) 851, 985, 1138
DdeI CTNAG 8 cut(s) 162, 448, 554, 710, 745, 860, 879, 1358
DpnI GATC 1 cut(s) 996
DpnII GATC 1 cut(s) 994
DraIII CACNNNGTG 1 cut(s) 1361
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 2 cut(s) 722, 1318
Eco53kI GAGCTC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 1177
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 577
Esp3I CGTCTC 2 cut(s) 255, 1147
FaeI CATG 5 cut(s) 483, 500, 692, 1090, 1415
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 5 cut(s) 479, 496, 688, 1086, 1411
FblI GTMKAC 2 cut(s) 469, 573
Fnu4HI GCNGC 6 cut(s) 5, 128, 141, 144, 320, 857
FokI GGATG 1 cut(s) 1132
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 5, 128, 141, 144, 320, 857
FspBI CTAG 4 cut(s) 150, 947, 1013, 1383
GlaI GCGC 1 cut(s) 1397
GluI GCNGC 6 cut(s) 5, 128, 141, 144, 320, 857
GsuI CTGGAG 1 cut(s) 1307
HaeIII GGCC 2 cut(s) 331, 1178
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 1398
Hin1II CATG 5 cut(s) 483, 500, 692, 1090, 1415
Hin6I GCGC 1 cut(s) 1396
HinP1I GCGC 1 cut(s) 1396
HincII GTYRAC 2 cut(s) 90, 470
HindII GTYRAC 2 cut(s) 90, 470
HinfI GANTC 7 cut(s) 11, 78, 208, 345, 400, 952, 1378
HpaII CCGG 1 cut(s) 225
HphI GGTGA 4 cut(s) 313, 910, 980, 1190
Hpy166II GTNNAC 4 cut(s) 90, 113, 470, 574
Hpy188I TCNGA 4 cut(s) 350, 451, 555, 880
Hpy188III TCNNGA 8 cut(s) 33, 260, 434, 629, 638, 668, 947, 1087
Hpy8I GTNNAC 4 cut(s) 90, 113, 470, 574
Hpy99I CGWCG 2 cut(s) 471, 474
HpyAV CCTTC 2 cut(s) 1126, 1168
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 8 cut(s) 4, 240, 410, 734, 794, 894, 1108, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 533, 1274
HpyF3I CTNAG 8 cut(s) 162, 448, 554, 710, 745, 860, 879, 1358
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 5 cut(s) 483, 500, 692, 1090, 1415
HspAI GCGC 1 cut(s) 1396
KspI CCGCGG 1 cut(s) 857
Kzo9I GATC 1 cut(s) 994
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 238, 675, 851, 951, 1202, 1271
Lsp1109I GCAGC 4 cut(s) 16, 152, 155, 331
LweI GCATC 4 cut(s) 206, 211, 1045, 1103
MaeI CTAG 4 cut(s) 150, 947, 1013, 1383
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 588, 1232
MalI GATC 1 cut(s) 996
MboI GATC 1 cut(s) 994
MboII GAAGA 8 cut(s) 464, 593, 907, 983, 1058, 1061, 1061, 1141
MfeI CAATTG 1 cut(s) 729
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 331
MluNI TGGCCA 1 cut(s) 331
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 2 cut(s) 420, 799
MnlI CCTC 9 cut(s) 131, 263, 512, 901, 984, 1083, 1211, 1306, 1309
Mox20I TGGCCA 1 cut(s) 331
MscI TGGCCA 1 cut(s) 331
MseI TTAA 7 cut(s) 213, 390, 585, 704, 810, 1037, 1281
MslI CAYNNNNRTG 2 cut(s) 739, 1239
Msp20I TGGCCA 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 856
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 729
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 3 cut(s) 328, 533, 1274
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 994
NlaIII CATG 5 cut(s) 483, 500, 692, 1090, 1415
NlaIV GGNNCC 1 cut(s) 1179
NmuCI GTSAC 2 cut(s) 588, 1232
OliI CACNNNNGTG 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 31
PagI TCATGA 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PfeI GAWTC 6 cut(s) 11, 78, 345, 400, 952, 1378
PflMI CCANNNNNTGG 1 cut(s) 1361
PkrI GCNGC 6 cut(s) 6, 129, 142, 145, 321, 858
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshBI ATTAAT 2 cut(s) 390, 1037
Psp124BI GAGCTC 1 cut(s) 427
Psp1406I AACGTT 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 1179
PspPI GGNCC 3 cut(s) 722, 1177, 1318
RsaI GTAC 3 cut(s) 852, 986, 1139
RsaNI GTAC 3 cut(s) 851, 985, 1138
RseI CAYNNNNRTG 2 cut(s) 739, 1239
SacI GAGCTC 1 cut(s) 427
SacII CCGCGG 1 cut(s) 857
SalI GTCGAC 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 1071
SaqAI TTAA 7 cut(s) 213, 390, 585, 704, 810, 1037, 1281
SatI GCNGC 6 cut(s) 5, 128, 141, 144, 320, 857
Sau3AI GATC 1 cut(s) 994
Sau96I GGNCC 3 cut(s) 722, 1177, 1318
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 4 cut(s) 206, 211, 1045, 1103
SfcI CTRYAG 1 cut(s) 531
Sfr274I CTCGAG 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 857
SgrBI CCGCGG 1 cut(s) 857
SgrDI CGTCGACG 1 cut(s) 468
SinI GGWCC 2 cut(s) 722, 1318
SlaI CTCGAG 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 739, 1239
SmlI CTYRAG 4 cut(s) 31, 426, 434, 1202
SmoI CTYRAG 4 cut(s) 31, 426, 434, 1202
SpeI ACTAGT 1 cut(s) 149
SsiI CCGC 4 cut(s) 128, 184, 854, 856
SspI AATATT 1 cut(s) 769
SspMI CTAG 4 cut(s) 150, 947, 1013, 1383
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 1 cut(s) 887
TaiI ACGT 1 cut(s) 339
TaqI TCGA 5 cut(s) 9, 32, 259, 469, 997
TaqII GACCGA 1 cut(s) 90
TauI GCSGC 2 cut(s) 130, 859
TfiI GAWTC 6 cut(s) 11, 78, 345, 400, 952, 1378
Tru1I TTAA 7 cut(s) 213, 390, 585, 704, 810, 1037, 1281
Tru9I TTAA 7 cut(s) 213, 390, 585, 704, 810, 1037, 1281
TscAI CASTG 3 cut(s) 88, 417, 687
TseFI GTSAC 2 cut(s) 588, 1232
TseI GCWGC 4 cut(s) 4, 140, 143, 319
Tsp45I GTSAC 2 cut(s) 588, 1232
TspDTI ATGAA 8 cut(s) 111, 513, 593, 795, 892, 1075, 1316, 1391
TspGWI ACGGA 2 cut(s) 487, 1409
TspRI CASTG 3 cut(s) 88, 417, 687
Van91I CCANNNNNTGG 1 cut(s) 1361
VpaK11BI GGWCC 2 cut(s) 722, 1318
VspI ATTAAT 2 cut(s) 390, 1037
XapI RAATTY 2 cut(s) 382, 697
XbaI TCTAGA 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 469, 573
XspI CTAG 4 cut(s) 150, 947, 1013, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.