Rroxscaffold_4G00296100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000095
Physical Location & Seq
Reverse (-)
16181617 .. 16184803
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296100.1

Sequence Viewer

Length: 906 bp
ATGTCCTCTGAACACTTTAGCTTTGAATCCCTCAAAGTTCTTCATTTGGAATGCGTTAATGTGACTGGAGATGTTCTTGAGTGCATGTTGCGAAACTGCCCTTTTCTTGAACAAGTATCAGTGTATTATGCCAACAATTTGGTTGAGTTAAGCGTTGTTGATCCATCCATGGCACTCAAGTATTTGGAGATAAGATATTGTGGTGACATCAAAAGGATTCAGATTCATGATGCAAACCTTGTTTCATTGTCTTATAGTGGACATCCCATAGAATTGGATCTCAGTAATGTGCCCTTGCTGATTGAGGTATCCATTTGTTATGATGGGTTTACCGATGAATCCATGAGACTTGCCTTCTCGCATCTTTCTTGCTGCATAAATCAGCTACAGACTCTCATGCTGGATATCCCCATGTTTGTGCAGGTCCACCAAAAGAATTTCCCTGTACTACCAAATCTCACGAATTTAGAAGTAAGAGTCTGCGCAGATGCTTGCTGGAATACTCTTCCTGTGTTAACCTCTTTCATGAAGGCATTTCCTAATTTGCGGAGGCTCGTTTTGAAGTTGGAATTCTCCTTTCCATTTAACCCAACAGAAGGAGAGAAAATGTTTAAAGGACTATGCTATGACATCTACACTGAGAAATGTCCACATCATAACATCAAGGTTGTAGAAATACTAGGGTATCGTCATGCTTCAACTACTGTTGAGCTTGTCAACTATATAGTAAAGAATGTTGTTGCGCTGGACAAAATTGTCATTGATCCTGCCCGGAATTGGGCATTTCATGGTACCAGAGCGAATAAGAGAATTGAAGAGGTCAAGCTTGAAGAAGAGGCCAGAGATCATGCTATGCACTTTATTAGAAAAGTAGTGCCATCAAGTGTAGAATTTGTCTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

301

Amino Acids

34.52

Weight (kDa)

5.84

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 185 8.9e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 8 - 298 2.6e-30 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
Acc16I TGCGCA 1 cut(s) 484
Acc36I ACCTGC 1 cut(s) 412
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 791
AciI CCGC 1 cut(s) 547
AclWI GGATC 3 cut(s) 155, 285, 758
AcsI RAATTY 4 cut(s) 436, 463, 569, 890
AfaI GTAC 2 cut(s) 447, 793
AfiI CCNNNNNNNGG 3 cut(s) 596, 777, 778
AgsI TTSAA 6 cut(s) 26, 110, 562, 699, 815, 830
AluBI AGCT 4 cut(s) 21, 385, 712, 826
AluI AGCT 4 cut(s) 21, 385, 712, 826
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 3 cut(s) 155, 285, 758
AoxI GGCC 1 cut(s) 837
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 4 cut(s) 436, 463, 569, 890
Asp718I GGTACC 1 cut(s) 791
AspLEI GCGC 2 cut(s) 485, 745
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 294
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BanI GGYRCC 1 cut(s) 791
BbvI GCAGC 1 cut(s) 359
BccI CCATC 3 cut(s) 172, 317, 886
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 2 cut(s) 386, 902
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 3 cut(s) 220, 370, 478
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 98, 161
BpuMI CCSGG 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 777, 778
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 164, 262
BseLI CCNNNNNNNGG 3 cut(s) 596, 777, 778
BseMII CTCAG 2 cut(s) 295, 630
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 1 cut(s) 839
BshNI GGYRCC 1 cut(s) 791
BsiSI CCGG 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 596, 777, 778
BsmAI GTCTC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 4 cut(s) 160, 277, 763, 844
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 1 cut(s) 547
BspANI GGCC 1 cut(s) 839
BspCNI CTCAG 2 cut(s) 294, 631
BspHI TCATGA 2 cut(s) 226, 525
BspLI GGNNCC 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 3 cut(s) 155, 285, 758
BspT107I GGYRCC 1 cut(s) 791
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 4 cut(s) 160, 277, 763, 844
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 3 cut(s) 510, 810, 828
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 2 cut(s) 281, 639
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 164, 262
BstHHI GCGC 2 cut(s) 485, 745
BstKTI GATC 4 cut(s) 163, 280, 766, 847
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 4 cut(s) 160, 277, 763, 844
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 770
BstSFI CTRYAG 2 cut(s) 386, 902
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 2 cut(s) 139, 274
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 839
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 164, 262
BtsIMutI CAGTG 2 cut(s) 126, 636
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 2 cut(s) 226, 525
CfoI GCGC 2 cut(s) 485, 745
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 446, 792
CviJI RGCY 6 cut(s) 21, 385, 553, 712, 826, 839
CviKI_1 RGCY 6 cut(s) 21, 385, 553, 712, 826, 839
CviQI GTAC 2 cut(s) 446, 792
DdeI CTNAG 2 cut(s) 281, 639
DpnI GATC 4 cut(s) 162, 279, 765, 846
DpnII GATC 4 cut(s) 160, 277, 763, 844
DraI TTTAAA 1 cut(s) 613
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 510, 810, 828
EarI CTCTTC 3 cut(s) 510, 810, 828
Eco130I CCWWGG 1 cut(s) 168
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 2 cut(s) 151, 249
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 1 cut(s) 680
FspI TGCGCA 1 cut(s) 484
GlaI GCGC 2 cut(s) 484, 744
GluI GCNGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 839
HapII CCGG 1 cut(s) 772
HhaI GCGC 2 cut(s) 485, 745
Hin6I GCGC 2 cut(s) 483, 743
HinP1I GCGC 2 cut(s) 483, 743
HincII GTYRAC 2 cut(s) 516, 718
HindII GTYRAC 2 cut(s) 516, 718
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 6 cut(s) 26, 217, 223, 338, 391, 477
HpaI GTTAAC 1 cut(s) 516
HpaII CCGG 1 cut(s) 772
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 6 cut(s) 260, 330, 427, 516, 650, 718
Hpy188I TCNGA 2 cut(s) 10, 222
Hpy188III TCNNGA 5 cut(s) 77, 107, 227, 460, 526
Hpy8I GTNNAC 6 cut(s) 260, 330, 427, 516, 650, 718
HpyAV CCTTC 3 cut(s) 364, 523, 590
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 5 cut(s) 84, 233, 375, 421, 856
HpyF3I CTNAG 2 cut(s) 281, 639
HspAI GCGC 2 cut(s) 483, 743
KpnI GGTACC 1 cut(s) 795
KspAI GTTAAC 1 cut(s) 516
Kzo9I GATC 4 cut(s) 160, 277, 763, 844
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 3 cut(s) 220, 370, 478
MaeI CTAG 1 cut(s) 680
MaeIII GTNAC 2 cut(s) 61, 203
MalI GATC 4 cut(s) 162, 279, 765, 846
MboI GATC 4 cut(s) 160, 277, 763, 844
MboII GAAGA 5 cut(s) 32, 497, 827, 842, 845
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 385, 486
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 7 cut(s) 16, 41, 298, 529, 543, 811, 829
MseI TTAA 5 cut(s) 57, 149, 515, 585, 612
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 772
MspR9I CCNGG 1 cut(s) 772
Mva1269I GAATGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 772
NcoI CCATGG 1 cut(s) 168
NdeII GATC 4 cut(s) 160, 277, 763, 844
NlaIV GGNNCC 1 cut(s) 793
NmuCI GTSAC 2 cut(s) 61, 203
NsbI TGCGCA 1 cut(s) 484
NspI RCATGY 1 cut(s) 88
PagI TCATGA 2 cut(s) 226, 525
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 4 cut(s) 26, 217, 223, 338
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 2 cut(s) 385, 485
PpsI GAGTC 2 cut(s) 385, 485
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 424
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 447, 793
RsaNI GTAC 2 cut(s) 446, 792
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 5 cut(s) 57, 149, 515, 585, 612
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 4 cut(s) 160, 277, 763, 844
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 2 cut(s) 385, 486
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 220, 370, 478
SfcI CTRYAG 2 cut(s) 386, 902
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 77, 176
SmoI CTYRAG 2 cut(s) 77, 176
SsiI CCGC 1 cut(s) 547
SspMI CTAG 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 770
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 706
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 4 cut(s) 26, 217, 223, 338
Tru1I TTAA 5 cut(s) 57, 149, 515, 585, 612
Tru9I TTAA 5 cut(s) 57, 149, 515, 585, 612
TscAI CASTG 2 cut(s) 126, 643
TseFI GTSAC 2 cut(s) 61, 203
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 2 cut(s) 61, 203
TspDTI ATGAA 7 cut(s) 32, 215, 234, 351, 514, 542, 776
TspRI CASTG 2 cut(s) 126, 643
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 4 cut(s) 436, 463, 569, 890
XceI RCATGY 1 cut(s) 88
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.