Rmu_sc0018347.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018347.1
OG0000095
Physical Location & Seq
Forward (+)
1 .. 1065
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018347.1_g000001.1.cds

Sequence Viewer

Length: 584 bp
gatattgtctttcttacccctaaaggaagcgcaattgctactagtatcctttctaggagatggagatatgcttgggattctacagccactctcgactttgatgctaaatttcatgctcctagaaatttgcgtagcttcagagccctcgaaacggaattgaaagactcggaaagtcgcagatatgtcaactgggtgaatagtgtggtggaacgacacagaggcccaaccgtggaacgattcaggatttgctatgatcttgattgtcgtttgattgatcaatggattcaatttgtaatggaaaatggagttgaggaacttgagttggagctctttgtggaatgcggccttgtgtaccaagataactatattttcccccataaattactagccagtccatgtctcaagtccctcaaagttcttcatttcaaaaatgtcaatgtgactggagaaatcctcgagcacttcctctctaactgtccatttcttgaatggttgacggttaatgcttccagaaatttgggtaattttagggttgttggtccatcgattgcattgaagtacttggtgataaaacactgtccacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

195

Amino Acids

22.76

Weight (kDa)

8.26

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 342
AcsI RAATTY 3 cut(s) 107, 124, 514
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 2 cut(s) 353, 560
AfiI CCNNNNNNNGG 2 cut(s) 151, 229
AgsI TTSAA 5 cut(s) 160, 287, 427, 488, 556
AhlI ACTAGT 1 cut(s) 41
AluBI AGCT 2 cut(s) 135, 328
AluI AGCT 2 cut(s) 135, 328
Alw21I GWGCWC 2 cut(s) 330, 462
Alw26I GTCTC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 220, 343
ApoI RAATTY 3 cut(s) 107, 124, 514
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 221, 539
AsuHPI GGTGA 2 cut(s) 205, 577
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 539
BanII GRGCYC 2 cut(s) 145, 330
Bbv12I GWGCWC 2 cut(s) 330, 462
BccI CCATC 2 cut(s) 54, 550
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciVI GTATCC 1 cut(s) 56
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 404
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 4 cut(s) 42, 54, 120, 386
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmcAI AGTACT 1 cut(s) 560
Bme18I GGWCC 1 cut(s) 539
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 2 cut(s) 221, 539
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 438, 470
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 338, 386
Bsa29I ATCGAT 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 229
Bse1I ACTGG 3 cut(s) 194, 390, 448
BseCI ATCGAT 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 151, 229
BseNI ACTGG 3 cut(s) 194, 390, 448
BshFI GGCC 2 cut(s) 222, 345
BshVI ATCGAT 1 cut(s) 545
BsiHKAI GWGCWC 2 cut(s) 330, 462
BsiHKCI CYCGRG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 151, 229
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 222, 345
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 145, 330, 462
Bsp143I GATC 2 cut(s) 253, 274
BspACI CCGC 1 cut(s) 342
BspANI GGCC 2 cut(s) 222, 345
BspDI ATCGAT 1 cut(s) 545
BsrI ACTGG 3 cut(s) 194, 390, 448
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 253, 274
Bst4CI ACNGT 4 cut(s) 229, 476, 499, 578
BstDSI CCRYGG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 256, 277
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 253, 274
BstSFI CTRYAG 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 545
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 2 cut(s) 222, 345
BsuTUI ATCGAT 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 574
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 221, 539
ClaI ATCGAT 1 cut(s) 545
Csp6I GTAC 2 cut(s) 352, 559
CviAII CATG 2 cut(s) 113, 396
CviJI RGCY 7 cut(s) 86, 135, 143, 222, 328, 345, 389
CviKI_1 RGCY 7 cut(s) 86, 135, 143, 222, 328, 345, 389
CviQI GTAC 2 cut(s) 352, 559
DpnI GATC 2 cut(s) 255, 276
DpnII GATC 2 cut(s) 253, 274
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 2 cut(s) 145, 330
Eco47I GGWCC 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 145, 330
FaeI CATG 2 cut(s) 116, 399
FaiI YATR 7 cut(s) 69, 114, 183, 252, 366, 378, 397
FaqI GGGAC 1 cut(s) 391
FatI CATG 2 cut(s) 112, 395
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 343
FriOI GRGCYC 2 cut(s) 145, 330
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 4 cut(s) 42, 54, 120, 386
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 222, 345
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 116, 399
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 2 cut(s) 187, 495
HindII GTYRAC 2 cut(s) 187, 495
HinfI GANTC 4 cut(s) 77, 164, 237, 283
HphI GGTGA 2 cut(s) 205, 577
Hpy166II GTNNAC 4 cut(s) 187, 352, 495, 581
Hpy188I TCNGA 2 cut(s) 140, 169
Hpy188III TCNNGA 5 cut(s) 92, 241, 257, 485, 510
Hpy8I GTNNAC 4 cut(s) 187, 352, 495, 581
HpyCH4III ACNGT 4 cut(s) 229, 476, 499, 578
HpyCH4V TGCA 1 cut(s) 551
Hsp92II CATG 2 cut(s) 116, 399
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 253, 274
LmnI GCTCC 2 cut(s) 121, 325
LpnPI CCDG 5 cut(s) 175, 226, 403, 429, 523
LweI GCATC 1 cut(s) 91
MaeI CTAG 4 cut(s) 42, 54, 120, 386
MaeIII GTNAC 1 cut(s) 439
MalI GATC 2 cut(s) 255, 276
MboI GATC 2 cut(s) 253, 274
MboII GAAGA 1 cut(s) 410
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 3 cut(s) 145, 330, 462
MluCI AATT 8 cut(s) 33, 107, 124, 155, 287, 380, 514, 523
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 6 cut(s) 155, 212, 304, 419, 464, 476
MseI TTAA 1 cut(s) 501
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 344
NdeII GATC 2 cut(s) 253, 274
NlaIII CATG 2 cut(s) 116, 399
NmuCI GTSAC 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 455
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 3 cut(s) 77, 237, 283
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 221, 539
PspXI VCTCGAGB 1 cut(s) 455
RsaI GTAC 2 cut(s) 353, 560
RsaNI GTAC 2 cut(s) 352, 559
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 2 cut(s) 253, 274
Sau96I GGNCC 2 cut(s) 221, 539
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 3 cut(s) 145, 330, 462
SetI ASST 2 cut(s) 137, 330
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 81
Sfr274I CTCGAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 539
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 3 cut(s) 317, 401, 455
SmoI CTYRAG 3 cut(s) 317, 401, 455
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 8 cut(s) 33, 107, 124, 155, 287, 380, 514, 523
SsiI CCGC 1 cut(s) 342
SspMI CTAG 4 cut(s) 42, 54, 120, 386
SstI GAGCTC 1 cut(s) 330
TaaI ACNGT 4 cut(s) 229, 476, 499, 578
TaqI TCGA 4 cut(s) 93, 147, 456, 545
TasI AATT 8 cut(s) 33, 107, 124, 155, 287, 380, 514, 523
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 3 cut(s) 77, 237, 283
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 581
TseFI GTSAC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 101, 410
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 3 cut(s) 107, 124, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 4 cut(s) 42, 54, 120, 386
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.