RchiOBHm_Chr3g0471621

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000095
Physical Location & Seq
Reverse (-)
17473232 .. 17474242
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43736

Sequence Viewer

Length: 1011 bp
ATGTGTTTGCCTGATGAAATTTTAGCAAGTATACTCTCTCTATTGCCCCTGAAGGAAGCACAAGCTACTAGTGTTCTTTCTAGGCGATGGTGCCATCTGTGGGCGTCTACTGTTACACTTAACTTTGATAGTGCCCCAACGATGTGGAGTTTCGTACACAGCTCTACATCTTCCAAGTCCTACAACCTCAAATCGAAAGTAGAAAGTGAAATCAGTAGGTCTGTCCCTTGGATTAATAGTGTGGTGAAACAGCATAATGTCCCGTGCATTGAACTGTTCAGGGTTCGTTCTCATCTAAATCAAGAATTTGCAGGTTCTATTGATAAATGGATCCAATTTGCAATGGAAAAGGGTGTTCAAACACTGGAGTTGGACTTTTCAATCTTTGGATGTATTCCTCCAATGTATACTTTCCCCCATGATCTTATCAAGCACTTGTGTGATGGTCATATTCCAATTCAAGGCCCTTCTGCATGCATTGGTTTGAAGTCCCTCAAAGTTCTTAATTTCCATTGTGTTGATGTCGCTGGAGAAGTTCTTGAGTACTACTTGTCTAATTGTCCAGTTCTTGAACGACTATTAGTGCGTGATTCTCCATCTTTGAGTAATCTAAGAGTTGTTGATTCATCAGTTGCATTGAAGTATCTACTCATAGAATACTGTAGAAACATCAAAAGCATTGAGATTTGTGACACAAACCTTGTTTCATTTATATATGATGGAGATTGTAGAAATTTGCTTCTTAGAAATGTACCGCTGCTTGTTGAGGTATCAGTTAGTATGCCTTCCTGTAAGGACTGCATAAAGGTTGCCTTCACTCAACTCTCATGCCGTCTTTCTCAGTTAAAGATTCTGAAATTGAATCACCTCGGGGTTAGTCCATCCAATTGTTATGTTTTCGTTGTCCTTTATTTTTATGGGATTATATTAGTGCCTTACTCCTTGTTTGGTTTTGAGAAATACACGAGCAAGTCTCAAACATTTGGAATTATGTCTCTACACAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

336

Amino Acids

38.02

Weight (kDa)

8.3

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 36 3.1e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 93 - 288 5.8e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 107 - 210 2.7e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 90
AccI GTMKAC 3 cut(s) 31, 107, 407
AciI CCGC 1 cut(s) 755
AclWI GGATC 2 cut(s) 325, 338
AcsI RAATTY 3 cut(s) 18, 305, 733
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 3 cut(s) 156, 545, 753
AfiI CCNNNNNNNGG 2 cut(s) 100, 461
AgsI TTSAA 8 cut(s) 272, 359, 381, 461, 487, 572, 640, 862
AhlI ACTAGT 1 cut(s) 68
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 2 cut(s) 65, 162
AluI AGCT 2 cut(s) 65, 162
Alw26I GTCTC 2 cut(s) 978, 999
AlwI GGATC 2 cut(s) 325, 338
Ama87I CYCGRG 1 cut(s) 869
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 3 cut(s) 18, 305, 733
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 2 cut(s) 256, 857
AvaI CYCGRG 1 cut(s) 869
BaeGI GKGCMC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 90
BauI CACGAG 1 cut(s) 964
BbvI GCAGC 1 cut(s) 744
BccI CCATC 6 cut(s) 81, 102, 437, 604, 713, 889
BceAI ACGGC 1 cut(s) 816
BcoDI GTCTC 2 cut(s) 978, 999
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 2 cut(s) 69, 81
BfmI CTRYAG 1 cut(s) 661
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 759
BmcAI AGTACT 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 869
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 92, 332
BplI GAGNNNNNCTC 2 cut(s) 958, 990
BpmI CTGGAG 2 cut(s) 386, 549
BpuEI CTTGAG 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 227, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 461
Bse1I ACTGG 2 cut(s) 369, 563
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 227, 868
BseGI GGATG 2 cut(s) 395, 881
BseLI CCNNNNNNNGG 2 cut(s) 100, 461
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 854
BseNI ACTGG 2 cut(s) 369, 563
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 744
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 869
BslFI GGGAC 3 cut(s) 209, 245, 475
BslI CCNNNNNNNGG 2 cut(s) 100, 461
BsmAI GTCTC 2 cut(s) 978, 999
BsmFI GGGAC 3 cut(s) 209, 245, 475
BsnI GGCC 1 cut(s) 465
BsoBI CYCGRG 1 cut(s) 869
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 330, 421
BspACI CCGC 1 cut(s) 755
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 92, 332
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 325, 338
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 348
BsrI ACTGG 2 cut(s) 369, 563
BssECI CCNNGG 2 cut(s) 227, 868
BssMI GATC 2 cut(s) 330, 421
BssNAI GTATAC 2 cut(s) 32, 408
BssNI GRCGYC 1 cut(s) 104
BssSI CACGAG 1 cut(s) 964
BssT1I CCWWGG 1 cut(s) 227
Bst1107I GTATAC 2 cut(s) 32, 408
Bst2BI CACGAG 1 cut(s) 964
Bst4CI ACNGT 3 cut(s) 112, 276, 662
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 3 cut(s) 611, 743, 840
BstF5I GGATG 2 cut(s) 395, 881
BstKTI GATC 2 cut(s) 333, 424
BstMAI GTCTC 2 cut(s) 978, 999
BstMBI GATC 2 cut(s) 330, 421
BstNSI RCATGY 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 661
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 144
BstYI RGATCY 1 cut(s) 330
BstZ17I GTATAC 2 cut(s) 32, 408
BsuRI GGCC 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 395, 881
BtsIMutI CAGTG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 93
Csp6I GTAC 3 cut(s) 155, 544, 752
CviAII CATG 3 cut(s) 419, 474, 828
CviJI RGCY 3 cut(s) 65, 162, 465
CviKI_1 RGCY 3 cut(s) 65, 162, 465
CviQI GTAC 3 cut(s) 155, 544, 752
DdeI CTNAG 3 cut(s) 611, 743, 840
DpnI GATC 2 cut(s) 332, 423
DpnII GATC 2 cut(s) 330, 421
Eco130I CCWWGG 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 3 cut(s) 422, 477, 831
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FaqI GGGAC 3 cut(s) 209, 245, 475
FatI CATG 3 cut(s) 418, 473, 827
FblI GTMKAC 3 cut(s) 31, 107, 407
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 2 cut(s) 402, 868
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 2 cut(s) 69, 81
GluI GCNGC 1 cut(s) 758
GsuI CTGGAG 2 cut(s) 386, 549
HaeIII GGCC 1 cut(s) 465
HgaI GACGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 422, 477, 831
HinfI GANTC 4 cut(s) 590, 623, 850, 862
HphI GGTGA 2 cut(s) 256, 857
Hpy166II GTNNAC 4 cut(s) 32, 108, 157, 408
Hpy188I TCNGA 1 cut(s) 855
Hpy188III TCNNGA 3 cut(s) 302, 539, 569
Hpy8I GTNNAC 4 cut(s) 32, 108, 157, 408
HpyAV CCTTC 4 cut(s) 46, 477, 795, 823
HpyCH4III ACNGT 3 cut(s) 112, 276, 662
HpyCH4V TGCA 7 cut(s) 267, 311, 341, 473, 477, 635, 801
HpyF3I CTNAG 3 cut(s) 611, 743, 840
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 422, 477, 831
Kzo9I GATC 2 cut(s) 330, 421
LpnPI CCDG 8 cut(s) 24, 62, 265, 297, 350, 513, 576, 802
Lsp1109I GCAGC 1 cut(s) 744
MaeI CTAG 2 cut(s) 69, 81
MaeIII GTNAC 2 cut(s) 112, 689
MalI GATC 2 cut(s) 332, 423
MboI GATC 2 cut(s) 330, 421
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 886
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 5 cut(s) 197, 408, 503, 760, 878
Mph1103I ATGCAT 1 cut(s) 479
MseI TTAA 4 cut(s) 120, 234, 504, 845
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 757
MunI CAATTG 1 cut(s) 886
NdeII GATC 2 cut(s) 330, 421
NlaIII CATG 3 cut(s) 422, 477, 831
NlaIV GGNNCC 2 cut(s) 92, 332
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 1 cut(s) 477
OliI CACNNNNGTG 1 cut(s) 438
PaeI GCATGC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 590, 623, 850, 862
PkrI GCNGC 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 92, 332
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 3 cut(s) 156, 545, 753
RsaNI GTAC 3 cut(s) 155, 544, 752
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 4 cut(s) 120, 234, 504, 845
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 2 cut(s) 330, 421
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 545
SduI GDGCHC 1 cut(s) 136
SetI ASST 9 cut(s) 67, 164, 189, 221, 316, 702, 771, 810, 870
SfcI CTRYAG 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SpeI ACTAGT 1 cut(s) 68
SphI GCATGC 1 cut(s) 477
SsiI CCGC 1 cut(s) 755
SspMI CTAG 2 cut(s) 69, 81
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 3 cut(s) 112, 276, 662
TaqI TCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 4 cut(s) 590, 623, 850, 862
Tru1I TTAA 4 cut(s) 120, 234, 504, 845
Tru9I TTAA 4 cut(s) 120, 234, 504, 845
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 3 cut(s) 30, 615, 696
TspRI CASTG 1 cut(s) 369
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 3 cut(s) 18, 305, 733
XceI RCATGY 1 cut(s) 477
XmiI GTMKAC 3 cut(s) 31, 107, 407
XspI CTAG 2 cut(s) 69, 81
ZrmI AGTACT 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.