Rw1G025770

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000095
Physical Location & Seq
Forward (+)
52554186 .. 52557556
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025770.1

Sequence Viewer

Length: 564 bp
ATGAGACTTGCCTTCACCCATCTTTCTTGCTGCATAAATCAGCTACAGACTCTCATGCTGGATATCCCCATGTTCGTGCAGGTCCACCAAAAGAATTTCCCTGTACTACCAAATCTTAAGAATTTAGAAGTAAGAGTCTGCGCAGATGCTTGCCGGAATACTCTTCCTGTGTTAACCTCTTTCATGAAGGCATTTCCTAATTTGCAGAGGCTTGTTTTGAAGTTGGAATTCTCCTTTCCATTTAACCCAACAGAAGGAGAGAATATGTTTAAAGGACTATGCTATGGCATTTACACTGACAAATGTCCACATCGTAACATCAAGGTTGTTGAAATACTAGGGTATCGTCATGCTTCAACTACTGTTGAGCTTGTCAACTATATAGTAAAGAATGTTGTTGCGCTAGACAAAATTGTTATTGATCCTGCCCGGAATTGGGCACATCATGGTACCAGAGCGAATAAGAGAATTGAAGAGGTCAAGCTTGAAGAAGAGGCCAGAGATCATGCTATGCACTTTATTAGAAAAGTAGTGCCATCAAGTGTAGAATTTGTCTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

187

Amino Acids

21.55

Weight (kDa)

8.86

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 3 - 184 3.4e-13 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 449
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 4 cut(s) 94, 121, 227, 548
AfaI GTAC 2 cut(s) 105, 451
AfiI CCNNNNNNNGG 3 cut(s) 254, 435, 436
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 5 cut(s) 220, 332, 357, 473, 488
AluBI AGCT 3 cut(s) 43, 370, 484
AluI AGCT 3 cut(s) 43, 370, 484
AlwI GGATC 1 cut(s) 416
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 4 cut(s) 94, 121, 227, 548
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 2 cut(s) 143, 403
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BanI GGYRCC 1 cut(s) 449
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 27, 544
BcnI CCSGG 1 cut(s) 430
BfaI CTAG 2 cut(s) 338, 404
BfmI CTRYAG 2 cut(s) 44, 560
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 435, 436
BseLI CCNNNNNNNGG 3 cut(s) 254, 435, 436
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 154, 430
BslI CCNNNNNNNGG 3 cut(s) 254, 435, 436
BsnI GGCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 2 cut(s) 421, 502
BspANI GGCC 1 cut(s) 497
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 116
BssMI GATC 2 cut(s) 421, 502
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 3 cut(s) 168, 468, 486
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 151
BstHHI GCGC 2 cut(s) 143, 403
BstKTI GATC 2 cut(s) 424, 505
BstMBI GATC 2 cut(s) 421, 502
BstPAI GACNNNNGTC 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 2 cut(s) 44, 560
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 151
CciI TCATGA 1 cut(s) 183
CfoI GCGC 2 cut(s) 143, 403
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 104, 450
CviAII CATG 6 cut(s) 55, 70, 184, 350, 446, 506
CviJI RGCY 5 cut(s) 43, 211, 370, 484, 497
CviKI_1 RGCY 5 cut(s) 43, 211, 370, 484, 497
CviQI GTAC 2 cut(s) 104, 450
DpnI GATC 2 cut(s) 423, 504
DpnII GATC 2 cut(s) 421, 502
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 168, 468, 486
EarI CTCTTC 3 cut(s) 168, 468, 486
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 227
EcoRV GATATC 1 cut(s) 64
FaeI CATG 6 cut(s) 58, 73, 187, 353, 449, 509
FatI CATG 6 cut(s) 54, 69, 183, 349, 445, 505
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 2 cut(s) 338, 404
FspI TGCGCA 1 cut(s) 142
GlaI GCGC 2 cut(s) 142, 402
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 154, 430
HhaI GCGC 2 cut(s) 143, 403
Hin1II CATG 6 cut(s) 58, 73, 187, 353, 449, 509
Hin6I GCGC 2 cut(s) 141, 401
HinP1I GCGC 2 cut(s) 141, 401
HincII GTYRAC 2 cut(s) 174, 376
HindII GTYRAC 2 cut(s) 174, 376
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 49, 135
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 2 cut(s) 154, 430
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 4 cut(s) 85, 174, 308, 376
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 4 cut(s) 85, 174, 308, 376
HpyAV CCTTC 3 cut(s) 22, 181, 248
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 4 cut(s) 33, 79, 205, 514
Hsp92II CATG 6 cut(s) 58, 73, 187, 353, 449, 509
HspAI GCGC 2 cut(s) 141, 401
KpnI GGTACC 1 cut(s) 453
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 421, 502
LpnPI CCDG 9 cut(s) 44, 65, 114, 167, 180, 438, 443, 466, 511
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 338, 404
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 423, 504
MboI GATC 2 cut(s) 421, 502
MboII GAAGA 4 cut(s) 155, 485, 500, 503
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 8 cut(s) 94, 121, 199, 227, 411, 433, 468, 548
MlyI GAGTC 2 cut(s) 43, 144
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 187, 201, 469, 487
MseI TTAA 4 cut(s) 117, 173, 243, 270
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 2 cut(s) 154, 430
MspR9I CCNGG 1 cut(s) 430
NciI CCSGG 1 cut(s) 430
NdeII GATC 2 cut(s) 421, 502
NlaIII CATG 6 cut(s) 58, 73, 187, 353, 449, 509
NlaIV GGNNCC 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 142
PagI TCATGA 1 cut(s) 183
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 2 cut(s) 43, 143
PpsI GAGTC 2 cut(s) 43, 143
PshAI GACNNNNGTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 105, 451
RsaNI GTAC 2 cut(s) 104, 450
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 4 cut(s) 117, 173, 243, 270
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 421, 502
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 43, 144
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 442
SetI ASST 7 cut(s) 45, 84, 179, 327, 372, 480, 486
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 2 cut(s) 44, 560
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 8 cut(s) 94, 121, 199, 227, 411, 433, 468, 548
SspMI CTAG 2 cut(s) 338, 404
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 364
TasI AATT 8 cut(s) 94, 121, 199, 227, 411, 433, 468, 548
TatI WGTACW 1 cut(s) 103
Tru1I TTAA 4 cut(s) 117, 173, 243, 270
Tru9I TTAA 4 cut(s) 117, 173, 243, 270
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 172, 200
TspRI CASTG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 4 cut(s) 94, 121, 227, 548
XspI CTAG 2 cut(s) 338, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.