Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000095

Physical Location & Seq

Genomic Coordinates Forward (+)

48076878 .. 48078331

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGACCCTTAGGTTTGCTGCTGTTGACTTCTCAATTTACAATAATTTATTCCACTACTTTCGCCAACCAAAAGAATTTAAAGAGCAGGAGAGCTGGAAATACATCGATTGGGTGAATCGTGTGGTGCAACAGCATAGAGGGAAACATATAGAAGAATTCAGGATTAGCTTCTGTTTAGATACTCGCTTTTCAAGTTCCATTAATGAATGGATTCAATTTGCAATGGAAAACAGTGTTGAAAGGCTTGAGTTGGATTTTTATCCCGAAGTTTTCGCTGGATATGAAGATTATACATTTCCCCACAAACTTTTGGGCCTCTGCATTCCAATTCTGGGCTCTTGTGGATACAATATAGGCTTTAAGTCCCTCAAAGTTCTTCAGATCCGACATGTTGGTGTGACTGGAGAAGTTCTCGAGTATTTCCTGTCCAACTGTCCAGTACTCGAGAGATTATCAGTGATTTCCACAAAAGATTTGGTTAATTTAAGAGTTGTTGGTTGGTCGATTGCATTGAAGTATTTGGTGATACAAAATTGTTATATCCTGGAAAGCATTGAAATCAGAGACGTAAACATCGTTTCATTTACTTATTGTGGATTTAATTCGAGAAACCTGCTTATCAGTAATGTACCATTGCTTTCTGAGGTAACCGTTTCGAAGCGGTGTTGTCCAAAGGATTATATAAGGGTTGTCTTGACCCAACTTTCCTGCTGTCTTTCCAACATAGAGATTCTGAAGCTGCATATCCAGCTGGGAGCGGGCCACAATGAGAATCCTGTATTGCCTCTATTAGCAAATCTGAAGCATTTGGAATTACTAGTTGCAGCAAATTATTATAAGGCACTTCATCATTTAAATAGCTTCCAGAAGGCATCTCCTTACTTGCAGAGACTCTCATTGATGTTGCAGCTGTATTCGGAGAGAGCATGCATGGGAATTGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGCTATCGAGCTCATAAATCTGGTGTTGAACTTGTCATGCACTTAATAAAGAATGGTCTTGGACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGAGATACCCTCATGGAGCTGATCATACAGAACTCGATGAAGAAGTCAAGGCAAGAGATCATGCTAAGCAATACCTTGAAGCAAAAATCCCTTCAACTGTAGAGTTTGTGTGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016874 GO:0016879 GO:0016880 GO:0017178 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

Diphthami_syn_2 Ribonuc_L-PSP

Protein Analysis

404

Amino Acids

46.55

Weight (kDa)

6.98

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	41 - 401	4.8e-41	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	116 - 190	3.4e-06	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	321 - 360	1.3e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica	MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica	Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis	pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis	RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata	RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora	Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii	Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa	Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha	Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana	Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
Acc36I	ACCTGC	1 cut(s)	621
AccBSI	CCGCTC	1 cut(s)	758
AciI	CCGC	2 cut(s)	661, 758
AclWI	GGATC	2 cut(s)	376, 1076
AcsI	RAATTY	2 cut(s)	74, 155
AcuI	CTGAAG	3 cut(s)	362, 755, 821
AfaI	GTAC	3 cut(s)	441, 630, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	8 cut(s)	192, 215, 239, 514, 557, 1028, 1175, 1191
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	9 cut(s)	93, 168, 739, 751, 861, 910, 959, 1010, 1115
AluI	AGCT	9 cut(s)	93, 168, 739, 751, 861, 910, 959, 1010, 1115
Alw21I	GWGCWC	1 cut(s)	1012
Alw26I	GTCTC	2 cut(s)	558, 883
AlwI	GGATC	2 cut(s)	376, 1076
Ama87I	CYCGRG	2 cut(s)	413, 443
AoxI	GGCC	2 cut(s)	313, 760
ApeKI	GCWGC	5 cut(s)	17, 739, 824, 907, 956
ApoI	RAATTY	2 cut(s)	74, 155
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	313, 760
AsuHPI	GGTGA	3 cut(s)	124, 535, 968
AsuII	TTCGAA	1 cut(s)	656
AvaI	CYCGRG	2 cut(s)	413, 443
AxyI	CCTNAGG	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	338, 1012
Bbv12I	GWGCWC	1 cut(s)	1012
BbvI	GCAGC	5 cut(s)	4, 726, 836, 919, 968
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	545
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	2 cut(s)	558, 883
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	1194, 1211
BfuAI	ACCTGC	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	5 cut(s)	18, 740, 825, 908, 957
BlpI	GCTNAGC	1 cut(s)	1161
BlsI	GCNGC	5 cut(s)	19, 741, 826, 909, 958
BmcAI	AGTACT	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	545
BmeT110I	CYCGRG	2 cut(s)	413, 443
BmgT120I	GGNCC	2 cut(s)	313, 760
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	881
BplI	GAGNNNNNCTC	4 cut(s)	396, 428, 1090, 1122
BpmI	CTGGAG	2 cut(s)	423, 1085
Bpu1102I	GCTNAGC	1 cut(s)	1161
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	266, 965
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	3 cut(s)	406, 437, 1068
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	228, 632
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	545
BseCI	ATCGAT	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	2 cut(s)	228, 632
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	3 cut(s)	406, 437, 1068
BseXI	GCAGC	5 cut(s)	4, 726, 836, 919, 968
BseYI	CCCAGC	1 cut(s)	751
BshFI	GGCC	2 cut(s)	315, 762
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	1012
BsiHKCI	CYCGRG	2 cut(s)	413, 443
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	558, 883
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	315, 762
BsoBI	CYCGRG	2 cut(s)	413, 443
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	338, 1012
Bsp143I	GATC	4 cut(s)	381, 1081, 1117, 1153
Bsp1720I	GCTNAGC	1 cut(s)	1161
BspACI	CCGC	2 cut(s)	661, 758
BspANI	GGCC	2 cut(s)	315, 762
BspCNI	CTCAG	1 cut(s)	634
BspDI	ATCGAT	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	621
BspPI	GGATC	2 cut(s)	376, 1076
BspT104I	TTCGAA	1 cut(s)	656
BsrBI	CCGCTC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	228, 632
BsrI	ACTGG	3 cut(s)	406, 437, 1068
BssMI	GATC	4 cut(s)	381, 1081, 1117, 1153
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	4 cut(s)	233, 434, 652, 1195
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	760, 928
BstDEI	CTNAG	3 cut(s)	8, 642, 1161
BstEII	GGTNACC	1 cut(s)	646
BstKTI	GATC	4 cut(s)	384, 1084, 1120, 1156
BstMAI	GTCTC	2 cut(s)	558, 883
BstMBI	GATC	4 cut(s)	381, 1081, 1117, 1153
BstMWI	GCNNNNNNNGC	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	2 cut(s)	392, 930
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	2 cut(s)	1194, 1211
BstV1I	GCAGC	5 cut(s)	4, 726, 836, 919, 968
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	315, 762
BsuTUI	ATCGAT	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	238, 462
BveI	ACCTGC	1 cut(s)	621
Cac8I	GCNNGC	2 cut(s)	760, 928
Cfr13I	GGNCC	2 cut(s)	313, 760
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	440, 629, 1088
CviAII	CATG	7 cut(s)	389, 927, 931, 1036, 1095, 1109, 1157
CviQI	GTAC	3 cut(s)	440, 629, 1088
DdeI	CTNAG	3 cut(s)	8, 642, 1161
DpnI	GATC	4 cut(s)	383, 1083, 1119, 1155
DpnII	GATC	4 cut(s)	381, 1081, 1117, 1153
DraI	TTTAAA	2 cut(s)	79, 855
Ecl136II	GAGCTC	1 cut(s)	1010
Eco24I	GRGCYC	2 cut(s)	338, 1012
Eco53kI	GAGCTC	1 cut(s)	1010
Eco57I	CTGAAG	3 cut(s)	362, 755, 821
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	2 cut(s)	413, 443
Eco91I	GGTNACC	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	1010
EcoO65I	GGTNACC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	932
EcoT38I	GRGCYC	2 cut(s)	338, 1012
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	7 cut(s)	392, 930, 934, 1039, 1098, 1112, 1160
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	7 cut(s)	388, 926, 930, 1035, 1094, 1108, 1156
FauI	CCCGC	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	5 cut(s)	18, 740, 825, 908, 957
FriOI	GRGCYC	2 cut(s)	338, 1012
Fsp4HI	GCNGC	5 cut(s)	18, 740, 825, 908, 957
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	5 cut(s)	18, 740, 825, 908, 957
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	2 cut(s)	423, 1085
HaeIII	GGCC	2 cut(s)	315, 762
Hin1II	CATG	7 cut(s)	392, 930, 934, 1039, 1098, 1112, 1160
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	5 cut(s)	115, 211, 730, 772, 891
HphI	GGTGA	3 cut(s)	124, 535, 968
Hpy166II	GTNNAC	2 cut(s)	25, 571
Hpy188I	TCNGA	7 cut(s)	381, 386, 563, 643, 735, 801, 919
Hpy188III	TCNNGA	7 cut(s)	160, 263, 413, 445, 606, 694, 865
Hpy8I	GTNNAC	2 cut(s)	25, 571
HpyAV	CCTTC	2 cut(s)	862, 1197
HpyCH4III	ACNGT	4 cut(s)	233, 434, 652, 1195
HpyCH4IV	ACGT	1 cut(s)	567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	748
HpyF3I	CTNAG	3 cut(s)	8, 642, 1161
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	7 cut(s)	392, 930, 934, 1039, 1098, 1112, 1160
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	4 cut(s)	381, 1081, 1117, 1153
LmnI	GCTCC	2 cut(s)	755, 1112
Lsp1109I	GCAGC	5 cut(s)	4, 726, 836, 919, 968
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	397, 646
MalI	GATC	4 cut(s)	383, 1083, 1119, 1155
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	4 cut(s)	381, 1081, 1117, 1153
MboII	GAAGA	4 cut(s)	164, 296, 368, 1148
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	338, 1012
MlyI	GAGTC	1 cut(s)	885
MmeI	TCCRAC	4 cut(s)	231, 409, 453, 744
MnlI	CCTC	7 cut(s)	131, 326, 377, 637, 795, 989, 1116
Mph1103I	ATGCAT	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	8 cut(s)	78, 201, 360, 480, 485, 600, 854, 1043
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	3 cut(s)	751, 910, 959
MspR9I	CCNGG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	1 cut(s)	748
NdeII	GATC	4 cut(s)	381, 1081, 1117, 1153
NlaIII	CATG	7 cut(s)	392, 930, 934, 1039, 1098, 1112, 1160
NmuCI	GTSAC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	932
NspI	RCATGY	2 cut(s)	392, 930
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	930
PaeR7I	CTCGAG	2 cut(s)	413, 443
PciI	ACATGT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	115, 211, 730, 772
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	5 cut(s)	19, 741, 826, 909, 958
PleI	GAGTC	1 cut(s)	885
PpsI	GAGTC	1 cut(s)	885
PscI	ACATGT	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	1012
Psp6I	CCWGG	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	313, 760
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	3 cut(s)	751, 910, 959
RsaI	GTAC	3 cut(s)	441, 630, 1089
RsaNI	GTAC	3 cut(s)	440, 629, 1088
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	1012
SaqAI	TTAA	8 cut(s)	78, 201, 360, 480, 485, 600, 854, 1043
SatI	GCNGC	5 cut(s)	18, 740, 825, 908, 957
Sau3AI	GATC	4 cut(s)	381, 1081, 1117, 1153
Sau96I	GGNCC	2 cut(s)	313, 760
ScaI	AGTACT	1 cut(s)	441
SchI	GAGTC	1 cut(s)	885
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	338, 1012
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	2 cut(s)	1194, 1211
Sfr274I	CTCGAG	2 cut(s)	413, 443
SfuI	TTCGAA	1 cut(s)	656
SlaI	CTCGAG	2 cut(s)	413, 443
SmiI	ATTTAAAT	1 cut(s)	855
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	4 cut(s)	245, 413, 443, 980
SmoI	CTYRAG	4 cut(s)	245, 413, 443, 980
SpeI	ACTAGT	1 cut(s)	817
SphI	GCATGC	1 cut(s)	930
SsiI	CCGC	2 cut(s)	661, 758
SspMI	CTAG	1 cut(s)	818
SstI	GAGCTC	1 cut(s)	1012
StyD4I	CCNGG	1 cut(s)	543
SwaI	ATTTAAAT	1 cut(s)	855
TaaI	ACNGT	4 cut(s)	233, 434, 652, 1195
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	8 cut(s)	105, 414, 444, 503, 605, 656, 1006, 1131
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	4 cut(s)	115, 211, 730, 772
Tru1I	TTAA	8 cut(s)	78, 201, 360, 480, 485, 600, 854, 1043
Tru9I	TTAA	8 cut(s)	78, 201, 360, 480, 485, 600, 854, 1043
TscAI	CASTG	2 cut(s)	238, 462
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	5 cut(s)	17, 739, 824, 907, 956
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	219, 297, 570, 836, 1149
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	2 cut(s)	238, 462
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	2 cut(s)	74, 155
XceI	RCATGY	2 cut(s)	392, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	2 cut(s)	413, 443
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	818
ZrmI	AGTACT	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.