Rh2CG182100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000095
Physical Location & Seq
Forward (+)
16755980 .. 16758251
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG182100.1

Sequence Viewer

Length: 327 bp
ATGGTTGAACCAAATAGCAAGTTATCACAATCATGGAGTAAAAAAAGTCCCTTTGCCAAGAAGACAGCTGCAAAATGCTCCCATGATCGTCTAAAGGTGGTGGAAATAGTAGGGTACAGTGGCCTCAGCCGTCAGATTGAACTTGTAATGTACTTGACAAAAACTGCAAGTAATCTGGAGAAAATTGTTTTTGATTCTGTTAATTCTTGGAGGCCAAGATTCGACAGACTACGAGATCTTGTAGTGGAGAAGGAAGAATTGTCAAGAGCTCAGGCCCTGCAGCTTAAAAGAAAATTGCCAGCAACTCTAGAAGTTGTGTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

9.78

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 25 - 64 1.8e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 116, 152
AgsI TTSAA 2 cut(s) 8, 140
AluBI AGCT 3 cut(s) 68, 269, 283
AluI AGCT 3 cut(s) 68, 269, 283
Alw21I GWGCWC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 3 cut(s) 121, 212, 273
ApeKI GCWGC 2 cut(s) 68, 280
AspS9I GGNCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 55, 292
BceAI ACGGC 1 cut(s) 114
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 2 cut(s) 278, 323
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 69, 281
BlsI GCNGC 2 cut(s) 70, 282
BmgT120I GGNCC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 2 cut(s) 125, 270
BseMII CTCAG 2 cut(s) 139, 284
BseXI GCAGC 2 cut(s) 55, 292
BshFI GGCC 3 cut(s) 123, 214, 275
BsiHKAI GWGCWC 1 cut(s) 271
BslFI GGGAC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 3 cut(s) 123, 214, 275
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 85, 235
BspANI GGCC 3 cut(s) 123, 214, 275
BspCNI CTCAG 2 cut(s) 138, 283
BspMAI CTGCAG 1 cut(s) 282
BssMI GATC 2 cut(s) 85, 235
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 125, 270
BstKTI GATC 2 cut(s) 88, 238
BstMBI GATC 2 cut(s) 85, 235
BstSFI CTRYAG 2 cut(s) 278, 323
BstV1I GCAGC 2 cut(s) 55, 292
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 3 cut(s) 123, 214, 275
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 115, 151
CviAII CATG 2 cut(s) 33, 83
CviJI RGCY 7 cut(s) 68, 123, 129, 214, 269, 275, 283
CviKI_1 RGCY 7 cut(s) 68, 123, 129, 214, 269, 275, 283
CviQI GTAC 2 cut(s) 115, 151
DdeI CTNAG 2 cut(s) 125, 270
DpnI GATC 2 cut(s) 87, 237
DpnII GATC 2 cut(s) 85, 235
Ecl136II GAGCTC 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 2 cut(s) 36, 86
FaiI YATR 2 cut(s) 34, 84
FaqI GGGAC 1 cut(s) 33
FatI CATG 2 cut(s) 32, 82
Fnu4HI GCNGC 2 cut(s) 69, 281
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 69, 281
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 69, 281
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 3 cut(s) 123, 214, 275
Hin1II CATG 2 cut(s) 36, 86
HinfI GANTC 2 cut(s) 194, 219
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 3 cut(s) 176, 264, 308
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 71, 167, 280
HpyF3I CTNAG 2 cut(s) 125, 270
Hsp92II CATG 2 cut(s) 36, 86
Kzo9I GATC 2 cut(s) 85, 235
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 161, 257, 290, 312
Lsp1109I GCAGC 2 cut(s) 55, 292
MaeI CTAG 1 cut(s) 308
MalI GATC 2 cut(s) 87, 237
MboI GATC 2 cut(s) 85, 235
MboII GAAGA 2 cut(s) 73, 266
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 4 cut(s) 183, 202, 257, 293
MnlI CCTC 2 cut(s) 134, 204
MseI TTAA 2 cut(s) 201, 285
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 68
NdeII GATC 2 cut(s) 85, 235
NlaIII CATG 2 cut(s) 36, 86
PfeI GAWTC 2 cut(s) 194, 219
PkrI GCNGC 2 cut(s) 70, 282
Psp124BI GAGCTC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 116, 152
RsaNI GTAC 2 cut(s) 115, 151
RseI CAYNNNNRTG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 201, 285
SatI GCNGC 2 cut(s) 69, 281
Sau3AI GATC 2 cut(s) 85, 235
Sau96I GGNCC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 271
SetI ASST 4 cut(s) 70, 99, 271, 285
SfcI CTRYAG 2 cut(s) 278, 323
SmiMI CAYNNNNRTG 1 cut(s) 31
Sse9I AATT 4 cut(s) 183, 202, 257, 293
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 1 cut(s) 271
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 4 cut(s) 183, 202, 257, 293
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 2 cut(s) 194, 219
Tru1I TTAA 2 cut(s) 201, 285
Tru9I TTAA 2 cut(s) 201, 285
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 68, 280
TspRI CASTG 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.