RLG00000003925

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000095
Physical Location & Seq
Reverse (-)
54343909 .. 54345826
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003925

Sequence Viewer

Length: 762 bp
ATGGCCGAACCAAGCAACAAGGGTGGTTACAATTTGAGAAAGAGAAGGAAAACATGTGCTTGGGTGGATAGAATCAGTGGAATGCCGGATGAAATTCTAGTGAGTATACTGTCTTTCTTGCCGCTGAAGGAAGCACAGGCTACTTGTATCTTGTCTAGGAGATGGCATTATGTGTGGGCGTCTCTCATGACTCTCAACTTTGACACCAAGAAAAGGTTGAGCACCTTGAAGGGTCTGAAGCCGAAAGAACGAGACCAGGGACTTATCAAGAGGTATGCTAAGTGGGTCAACAGCGTGGTTGAACAGCATAGAGCCCCATGCATTGACCAGTTCCGTGTTTCGTTTTATCTAGACAAGAGTTTTTCGAGTTCTATTGATAAGTGGGTTGAGTTTGCACTGAAAAAGGGAGTTCAAATGCTGGAGCTGAATTTGTTAGAATATGTCTATTATTGCAAGATCAAGCCGGGATATCCTTTTCCCCAGCAACTTTTGGGTCTCAACAGAGAAGGTGAAGAGTCTGCTTGGAAGCACTTGTGTCGTGATGGTCCAAGTCATCAACCCTGCTACTACAGGGAGAGTTATATGGTTCCCATGTTACCAAATCTCAAGCTTTTGGGATTATCCTTTAAAGATGATGAGGCACTTATGCAATTGGCTTCCTTCTTGAAATCATCTCCTTGCGTTGAAACACTTGTGATACATGGATTTCTTCCTTTTGATAGGCTCGATGAACTTGTGGCACTTGTTGCATGCTCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

254

Amino Acids

29.31

Weight (kDa)

9.09

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 62 2.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AciI CCGC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 93, 427
AcuI CTGAAG 2 cut(s) 146, 257
AcyI GRCGYC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 5 cut(s) 229, 302, 413, 667, 686
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 424, 610
AluI AGCT 2 cut(s) 424, 610
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 3 cut(s) 186, 246, 500
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 93, 427
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 2 cut(s) 156, 536
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 186, 246, 500
BfaI CTAG 3 cut(s) 98, 156, 350
BfmI CTRYAG 1 cut(s) 568
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 257, 465
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 257, 465
BpmI CTGGAG 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 246, 500
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 480
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 86, 464
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 3 cut(s) 186, 246, 500
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 246, 500
Bsp1286I GDGCHC 2 cut(s) 224, 316
Bsp143I GATC 1 cut(s) 456
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 588
BspTNI GGTCTC 2 cut(s) 246, 500
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 456
BssNAI GTATAC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 507
BstACI GRCGYC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 746
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 3 cut(s) 186, 246, 500
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 2 cut(s) 57, 753
BstSCI CCNGG 2 cut(s) 255, 463
BstSFI CTRYAG 1 cut(s) 568
BstZ17I GTATAC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 82, 395
Cac8I GCNNGC 1 cut(s) 751
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 6 cut(s) 54, 187, 318, 592, 701, 750
CviJI RGCY 9 cut(s) 5, 140, 241, 314, 424, 463, 610, 656, 724
CviKI_1 RGCY 9 cut(s) 5, 140, 241, 314, 424, 463, 610, 656, 724
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraI TTTAAA 1 cut(s) 628
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 2 cut(s) 246, 500
Eco32I GATATC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 146, 257
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 6 cut(s) 57, 190, 321, 595, 704, 753
FaqI GGGAC 1 cut(s) 273
FatI CATG 6 cut(s) 53, 186, 317, 591, 700, 749
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 3 cut(s) 98, 156, 350
GluI GCNGC 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 86, 464
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 6 cut(s) 57, 190, 321, 595, 704, 753
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 3 cut(s) 72, 190, 515
HpaII CCGG 2 cut(s) 86, 464
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 107, 289
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 5 cut(s) 187, 268, 350, 539, 664
Hpy8I GTNNAC 2 cut(s) 107, 289
HpyAV CCTTC 5 cut(s) 39, 121, 223, 500, 670
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 321, 395, 453, 649, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 6 cut(s) 57, 190, 321, 595, 704, 753
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 421
MaeI CTAG 3 cut(s) 98, 156, 350
MaeIII GTNAC 2 cut(s) 26, 594
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 2 cut(s) 524, 701
MfeI CAATTG 1 cut(s) 650
MhlI GDGCHC 2 cut(s) 224, 316
MluCI AATT 4 cut(s) 31, 93, 427, 650
MlyI GAGTC 2 cut(s) 184, 524
MnlI CCTC 2 cut(s) 264, 631
Mph1103I ATGCAT 1 cut(s) 323
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 86, 464
MspR9I CCNGG 2 cut(s) 257, 465
MunI CAATTG 1 cut(s) 650
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 1 cut(s) 465
NdeII GATC 1 cut(s) 456
NlaIII CATG 6 cut(s) 57, 190, 321, 595, 704, 753
NlaIV GGNNCC 1 cut(s) 588
NsiI ATGCAT 1 cut(s) 323
NspI RCATGY 2 cut(s) 57, 753
PaeI GCATGC 1 cut(s) 753
PagI TCATGA 1 cut(s) 186
PciI ACATGT 1 cut(s) 53
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 2 cut(s) 184, 523
PpsI GAGTC 2 cut(s) 184, 523
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 2 cut(s) 184, 524
ScrFI CCNGG 2 cut(s) 257, 465
SduI GDGCHC 2 cut(s) 224, 316
SetI ASST 6 cut(s) 218, 227, 275, 426, 511, 612
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 1 cut(s) 753
Sse9I AATT 4 cut(s) 31, 93, 427, 650
SsiI CCGC 1 cut(s) 122
SspMI CTAG 3 cut(s) 98, 156, 350
StyD4I CCNGG 2 cut(s) 255, 463
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 365, 726
TasI AATT 4 cut(s) 31, 93, 427, 650
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 82, 402
TspDTI ATGAA 2 cut(s) 105, 744
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 82, 402
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 2 cut(s) 93, 427
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 2 cut(s) 57, 753
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 3 cut(s) 98, 156, 350
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.