Rorug07G0041400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000095
Physical Location & Seq
Forward (+)
2913744 .. 2921944
8201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0041400.1

Sequence Viewer

Length: 2355 bp
ATGATTATTAAGTGGCTCATTGTGCAATTCTTGCTACACTTGTCAAGTTTAAGGTATGCACTTCAATTCTTTGTAATTAATTGTGGTGTGAACAATGTTAACCTCGATGATCAGACCAAGATCACAACCGAGAAAGCTTGCACTTACAAAGTAGGTGTCGAAGAGAACACGAAAGACCTGGGTGAGAAGAAACTGTGTTTAGGAGAATTAGCATCGGTTATGGAGAACCTGGGAAGTCTATGCGGTGATAACGGGTCTAAGGAGATGGCTGACTTGCTTGAGGAGGAACCCAGCTTGGAGGAAGTAAAAGAAGCCTTCCATTTGTTTGATGAAAATACCGATGGGTTCATCGATGCAGGGGAGATCAAGAAGAGTCTCCGGCTTTATCTTCCTCAACCTCAGATTTCAGTCGACAGCGGAAACAGGATGACTATACCTCAAATAAGAAACGTTGGGCTTCCATTGATGAACCTTATCAGATTAAAAGGAACTCCCATCCTGCAGCAGCTTCATTTAGAGGAGCAACTGCTTCGAACGTCATCTGATAATTGGTGCATTATAAATGATGGAACGAATAGTCCTAATATTGTCATGGGTATTTCAGGAAAGCCTGCAGAGCTTCTTGACGTTGATCTGGTGTTACGAGATCAGGTTCCTGTCATTAAAAGGTTTACTGGAGGTGGCACGGTTACAGTTGATAATGGCACGATATTTGTCACTTTCATATGCAACAGGGATGCTGTTCCTGGCTTGCAACTATATCCACGACCTATAATGTCCTGGAGTAGCCAATTATACAGCAGAGTGTTCCAAGGATTTGGTGACTTTCACCTTCGTGAAAATGATTATGTATTTGGTAACCTCAAGTTTGGTGGTAATGCTCAATCTATTACTAAAAACCGGTGGATCCACCACACATCCTTTCTATGGGACTATGAGGTTAGGAACATGGCATACCTGAAGCTTCCAAAACGGGTTCCTGAATATCGATTGGCAAGGGACCATTTAGAATTCATATGCCGCATGAAGGACTACATGCCAAGATCAGTTTTCATCGACAAAACTGTCGAGGCAATCAGTACCGAATTTTCAGTAAACTCAGAAGAAACAGACCCATTTGGAACCAACTCAAAGTTTGTGCCCTCAACTAGACTATTGACAAGGCAAGAGTTGGAAGAAGTAGCTTTGGCCTCTCAACCTGAGAGCCCTCTCTCTGAGTCCTTGTCCTTGATGGGAAGGGTTAAGTTAAAGATAAAGAAATTAGAGAGCAGTGGCAATCGACAGGTTACTTATTCGAAACGGAGAAATGGCATCTTGAAAAAGGCCAAGGAGTTATCAATCTTATGTGATGTAGACATTACGCTTCTCATGTTTTCCCCAACTGGAAGGCCTACATTGTTCCAAGGGGAGCGCAGCAATTTTGAAGACATTATTACAAAGTTTGCCCACTTAACTCCACAGGAGAGGGCGAAAAGGAAGTTGGAGAGCCTTGAAGTACTGAAGAAAACTTTTAGGAAGTTGGACCATGATGTAAATGTACAAGAGTTTGTGGGTTCCAGCACTCAGACAGTTGAGAATCTGACAAATCAGGCAAGGGCATTGCAAACCCAGCTTACGGAACTGCATAAGAGACTGAGCTTTTGGAGTAATCCAGAGAAGGTTGATGATGTAGAACAGCTAAGGCAGATGGAAGACATGCTTAAGGAATCAATTAGTCGAACACGTCTGCACAAGGAAAACTTTGAAAAACATCAACTAGCTTCACTGAATTGCACAGGCCAGTTTCAAAATGGGATGCCTTCATCTTTAATTGTGGGCAGTGTGCATGAAACTCAACCGATGCCTTGGATTTTGAATAATGACAATCAACGTTTGATATTACCCAACGAGGCTTCCTTTCTGCCTCATAGAGACGTGGACTGCTCTACAAATGCCTCAGTAGCACGATTTAATAGTTACTTTGGCAGTGGCGCCAGCACTAGTACTAGCACTGGTAAACAATCTGAGGTTGGTGATCCAGGACAACTTGATAATATGGGGCACATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTAAGTACAGAACTTGGCCAGCAGTATGCGTATCCATCATATTGCAATCCTAATGTGCCAGACGATAAAAAATTGAAGCCTGGTTTGGAAATGAACTTACCAACAAATTCGGTGGATTATCAAGTAAGTAGCAACTTCGAACTGCCTCGATCTTTGTATGGTGATGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCACCATTGCTGTATATGACCAGAATATGTACCAGCAGCAACCAAACATGAGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

784

Amino Acids

88.65

Weight (kDa)

5.72

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LplA-B_cat PF21948 166 - 363 1.7e-27 Lipoyl protein ligase A/B catalytic domain
SRF-TF PF00319 421 - 465 3.3e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AasI GACNNNNNNGTC 1 cut(s) 1064
AccB1I GGYRCC 1 cut(s) 1970
AccI GTMKAC 2 cut(s) 411, 1353
AciI CCGC 3 cut(s) 243, 417, 1021
AclI AACGTT 2 cut(s) 450, 1870
AclWI GGATC 3 cut(s) 901, 914, 2009
AcoI YGGCCR 1 cut(s) 2113
AcsI RAATTY 3 cut(s) 1010, 1085, 2203
AcuI CTGAAG 2 cut(s) 980, 1520
AcyI GRCGYC 1 cut(s) 1971
AfaI GTAC 6 cut(s) 1081, 1497, 1539, 1984, 2104, 2327
AfiI CCNNNNNNNGG 3 cut(s) 927, 1027, 1615
AflII CTTAAG 1 cut(s) 1700
AflIII ACRYGT 1 cut(s) 1721
AgeI ACCGGT 1 cut(s) 900
AgsI TTSAA 9 cut(s) 65, 1318, 1424, 1493, 1745, 1787, 1855, 2074, 2173
AhlI ACTAGT 1 cut(s) 1979
AjiI CACGTC 2 cut(s) 1724, 1915
AjnI CCWGG 6 cut(s) 177, 228, 745, 779, 2017, 2176
AjuI GAANNNNNNNTTGG 4 cut(s) 1463, 1495, 2165, 2197
AleI CACNNNNGTG 1 cut(s) 834
AloI GAACNNNNNNTCC 2 cut(s) 562, 594
Alw26I GTCTC 3 cut(s) 380, 1624, 1905
AlwI GGATC 3 cut(s) 901, 914, 2009
AoxI GGCC 6 cut(s) 1188, 1323, 1388, 1777, 2113, 2291
ApeKI GCWGC 4 cut(s) 502, 505, 1413, 2332
ApoI RAATTY 3 cut(s) 1010, 1085, 2203
ArsI GACNNNNNNTTYG 4 cut(s) 141, 173, 1623, 1655
AseI ATTAAT 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 900
AspLEI GCGC 2 cut(s) 1413, 1973
AspS9I GGNCC 3 cut(s) 1000, 1522, 2291
AsuC2I CCSGG 1 cut(s) 2290
AsuHPI GGTGA 6 cut(s) 194, 257, 821, 833, 2024, 2270
AsuII TTCGAA 3 cut(s) 532, 1295, 2235
AvaII GGWCC 2 cut(s) 1000, 1522
BaeGI GKGCMC 2 cut(s) 1143, 2043
BalI TGGCCA 1 cut(s) 2115
BamHI GGATCC 1 cut(s) 906
BanI GGYRCC 1 cut(s) 1970
BanII GRGCYC 1 cut(s) 1208
BbsI GAAGAC 2 cut(s) 1431, 1698
BbvI GCAGC 4 cut(s) 514, 517, 1425, 2344
BccI CCATC 7 cut(s) 259, 335, 503, 560, 1225, 1681, 2140
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 6 cut(s) 179, 230, 747, 781, 2019, 2178
BciVI GTATCC 1 cut(s) 2139
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 2290
BcoDI GTCTC 3 cut(s) 380, 1624, 1905
BcuI ACTAGT 1 cut(s) 1979
BfaI CTAG 6 cut(s) 1149, 1757, 1980, 1986, 2049, 2295
BfmI CTRYAG 2 cut(s) 500, 612
BfoI RGCGCY 1 cut(s) 1974
BfrI CTTAAG 1 cut(s) 1700
BfuI GTATCC 1 cut(s) 2139
BisI GCNGC 5 cut(s) 503, 506, 1021, 1414, 2333
BlsI GCNGC 5 cut(s) 504, 507, 1022, 1415, 2334
BmcAI AGTACT 2 cut(s) 1497, 1984
Bme1390I CCNGG 7 cut(s) 179, 230, 747, 781, 2019, 2178, 2290
Bme18I GGWCC 2 cut(s) 1000, 1522
BmgBI CACGTC 2 cut(s) 1724, 1915
BmgT120I GGNCC 3 cut(s) 1000, 1522, 2291
BmiI GGNNCC 8 cut(s) 288, 654, 908, 978, 1001, 1123, 1555, 1972
BmrFI CCNGG 7 cut(s) 179, 230, 747, 781, 2019, 2178, 2290
BmsI GCATC 7 cut(s) 221, 343, 727, 1320, 1785, 1830, 2275
BpiI GAAGAC 2 cut(s) 1431, 1698
BpmI CTGGAG 2 cut(s) 696, 802
Bpu10I CCTNAGC 1 cut(s) 1679
Bpu14I TTCGAA 3 cut(s) 532, 1295, 2235
BpuEI CTTGAG 2 cut(s) 299, 848
BpuMI CCSGG 1 cut(s) 2290
Bsa29I ATCGAT 2 cut(s) 351, 988
BsaBI GATNNNNATC 1 cut(s) 2265
BsaHI GRCGYC 1 cut(s) 1971
BsaJI CCNNGG 6 cut(s) 178, 229, 811, 1326, 1402, 1844
BsaWI WCCGGW 1 cut(s) 900
Bsc4I CCNNNNNNNGG 3 cut(s) 927, 1027, 1615
Bse118I RCCGGY 1 cut(s) 900
Bse1I ACTGG 4 cut(s) 679, 1387, 1780, 1996
Bse3DI GCAATG 2 cut(s) 1598, 2301
Bse8I GATNNNNATC 1 cut(s) 2265
BseBI CCWGG 6 cut(s) 179, 230, 747, 781, 2019, 2178
BseCI ATCGAT 2 cut(s) 351, 988
BseDI CCNNGG 6 cut(s) 178, 229, 811, 1326, 1402, 1844
BseGI GGATG 6 cut(s) 432, 495, 742, 917, 1800, 2266
BseJI GATNNNNATC 1 cut(s) 2265
BseLI CCNNNNNNNGG 3 cut(s) 927, 1027, 1615
BseMI GCAATG 2 cut(s) 1598, 2301
BseMII CTCAG 8 cut(s) 413, 1113, 1191, 1206, 1577, 1625, 1950, 1995
BseNI ACTGG 4 cut(s) 679, 1387, 1780, 1996
BseRI GAGGAG 2 cut(s) 296, 533
BseSI GKGCMC 2 cut(s) 1143, 2043
BseXI GCAGC 4 cut(s) 514, 517, 1425, 2344
BseYI CCCAGC 2 cut(s) 290, 1608
BsgI GTGCAG 1 cut(s) 1712
BshFI GGCC 6 cut(s) 1190, 1325, 1390, 1779, 2115, 2293
BshNI GGYRCC 1 cut(s) 1970
BshTI ACCGGT 1 cut(s) 900
BshVI ATCGAT 2 cut(s) 351, 988
BsiSI CCGG 3 cut(s) 379, 901, 2289
BslFI GGGAC 2 cut(s) 944, 1013
BslI CCNNNNNNNGG 3 cut(s) 927, 1027, 1615
BsmAI GTCTC 3 cut(s) 380, 1624, 1905
BsmBI CGTCTC 1 cut(s) 1905
BsmFI GGGAC 2 cut(s) 944, 1013
BsnI GGCC 6 cut(s) 1190, 1325, 1390, 1779, 2115, 2293
Bsp119I TTCGAA 3 cut(s) 532, 1295, 2235
Bsp1286I GDGCHC 3 cut(s) 1143, 1208, 2043
Bsp1407I TGTACA 1 cut(s) 1537
Bsp143I GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
BspACI CCGC 3 cut(s) 243, 417, 1021
BspANI GGCC 6 cut(s) 1190, 1325, 1390, 1779, 2115, 2293
BspCNI CTCAG 8 cut(s) 412, 1112, 1192, 1207, 1576, 1626, 1949, 1996
BspDI ATCGAT 2 cut(s) 351, 988
BspLI GGNNCC 8 cut(s) 288, 654, 908, 978, 1001, 1123, 1555, 1972
BspMAI CTGCAG 2 cut(s) 504, 616
BspPI GGATC 3 cut(s) 901, 914, 2009
BspT104I TTCGAA 3 cut(s) 532, 1295, 2235
BspT107I GGYRCC 1 cut(s) 1970
BspTI CTTAAG 1 cut(s) 1700
BsrDI GCAATG 2 cut(s) 1598, 2301
BsrFI RCCGGY 1 cut(s) 900
BsrGI TGTACA 1 cut(s) 1537
BsrI ACTGG 4 cut(s) 679, 1387, 1780, 1996
BssAI RCCGGY 1 cut(s) 900
BssECI CCNNGG 6 cut(s) 178, 229, 811, 1326, 1402, 1844
BssMI GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
BssNI GRCGYC 1 cut(s) 1971
BssT1I CCWWGG 4 cut(s) 811, 1326, 1402, 1844
Bst2UI CCWGG 6 cut(s) 179, 230, 747, 781, 2019, 2178
Bst4CI ACNGT 5 cut(s) 195, 688, 694, 1066, 1570
Bst6I CTCTTC 2 cut(s) 156, 365
BstACI GRCGYC 1 cut(s) 1971
BstAFI CTTAAG 1 cut(s) 1700
BstAPI GCANNNNNTGC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 1537
BstBI TTCGAA 3 cut(s) 532, 1295, 2235
BstC8I GCNNGC 5 cut(s) 139, 612, 752, 1975, 2117
BstEII GGTNACC 1 cut(s) 857
BstF5I GGATG 6 cut(s) 432, 495, 742, 917, 1800, 2266
BstH2I RGCGCY 1 cut(s) 1974
BstHHI GCGC 2 cut(s) 1413, 1973
BstKTI GATC 9 cut(s) 112, 123, 366, 634, 649, 909, 1046, 2017, 2249
BstMAI GTCTC 3 cut(s) 380, 1624, 1905
BstMBI GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
BstMWI GCNNNNNNNGC 5 cut(s) 22, 31, 616, 1609, 1940
BstNI CCWGG 6 cut(s) 179, 230, 747, 781, 2019, 2178
BstNSI RCATGY 2 cut(s) 1039, 1699
BstPI GGTNACC 1 cut(s) 857
BstSCI CCNGG 7 cut(s) 177, 228, 745, 779, 2017, 2176, 2288
BstSFI CTRYAG 2 cut(s) 500, 612
BstSLI GKGCMC 2 cut(s) 1143, 2043
BstV1I GCAGC 4 cut(s) 514, 517, 1425, 2344
BstV2I GAAGAC 2 cut(s) 1431, 1698
BstX2I RGATCY 1 cut(s) 906
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 1 cut(s) 906
Bsu15I ATCGAT 2 cut(s) 351, 988
BsuI GTATCC 1 cut(s) 2139
BsuRI GGCC 6 cut(s) 1190, 1325, 1390, 1779, 2115, 2293
BsuTUI ATCGAT 2 cut(s) 351, 988
BtrI CACGTC 2 cut(s) 1724, 1915
BtsCI GGATG 6 cut(s) 432, 495, 742, 917, 1800, 2266
BtsI GCAGTG 3 cut(s) 1276, 1825, 1972
BtsIMutI CAGTG 5 cut(s) 1276, 1763, 1825, 1972, 1989
Cac8I GCNNGC 5 cut(s) 139, 612, 752, 1975, 2117
CfoI GCGC 2 cut(s) 1413, 1973
Cfr10I RCCGGY 1 cut(s) 900
Cfr13I GGNCC 3 cut(s) 1000, 1522, 2291
ClaI ATCGAT 2 cut(s) 351, 988
Csp6I GTAC 6 cut(s) 1080, 1496, 1538, 1983, 2103, 2326
CspAI ACCGGT 1 cut(s) 900
CspCI CAANNNNNGTGG 4 cut(s) 853, 888, 2190, 2225
CviAII CATG 9 cut(s) 592, 949, 1024, 1036, 1369, 1526, 1696, 1826, 2344
CviQI GTAC 6 cut(s) 1080, 1496, 1538, 1983, 2103, 2326
DinI GGCGCC 1 cut(s) 1972
DpnI GATC 9 cut(s) 111, 122, 365, 633, 648, 908, 1045, 2016, 2248
DpnII GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
EaeI YGGCCR 1 cut(s) 2113
Eam1104I CTCTTC 2 cut(s) 156, 365
EarI CTCTTC 2 cut(s) 156, 365
Eco130I CCWWGG 4 cut(s) 811, 1326, 1402, 1844
Eco147I AGGCCT 1 cut(s) 1390
Eco24I GRGCYC 1 cut(s) 1208
Eco47I GGWCC 2 cut(s) 1000, 1522
Eco57I CTGAAG 2 cut(s) 980, 1520
Eco91I GGTNACC 1 cut(s) 857
EcoO65I GGTNACC 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 1010
EcoRII CCWGG 6 cut(s) 177, 228, 745, 779, 2017, 2176
EcoT14I CCWWGG 4 cut(s) 811, 1326, 1402, 1844
EcoT38I GRGCYC 1 cut(s) 1208
EgeI GGCGCC 1 cut(s) 1972
EheI GGCGCC 1 cut(s) 1972
ErhI CCWWGG 4 cut(s) 811, 1326, 1402, 1844
Esp3I CGTCTC 1 cut(s) 1905
FaeI CATG 9 cut(s) 595, 952, 1027, 1039, 1372, 1529, 1699, 1829, 2347
FalI AAGNNNNNCTT 4 cut(s) 1683, 1715, 1724, 1756
FaqI GGGAC 2 cut(s) 944, 1013
FatI CATG 9 cut(s) 591, 948, 1023, 1035, 1368, 1525, 1695, 1825, 2343
FauNDI CATATG 2 cut(s) 725, 1016
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 2 cut(s) 411, 1353
Fnu4HI GCNGC 5 cut(s) 503, 506, 1021, 1414, 2333
FokI GGATG 6 cut(s) 439, 482, 749, 904, 1807, 2253
FriOI GRGCYC 1 cut(s) 1208
Fsp4HI GCNGC 5 cut(s) 503, 506, 1021, 1414, 2333
FspBI CTAG 6 cut(s) 1149, 1757, 1980, 1986, 2049, 2295
GlaI GCGC 2 cut(s) 1412, 1972
GluI GCNGC 5 cut(s) 503, 506, 1021, 1414, 2333
GsaI CCCAGC 2 cut(s) 294, 1612
GsuI CTGGAG 2 cut(s) 696, 802
HaeII RGCGCY 1 cut(s) 1974
HaeIII GGCC 6 cut(s) 1190, 1325, 1390, 1779, 2115, 2293
HapII CCGG 3 cut(s) 379, 901, 2289
HhaI GCGC 2 cut(s) 1413, 1973
Hin1I GRCGYC 1 cut(s) 1971
Hin1II CATG 9 cut(s) 595, 952, 1027, 1039, 1372, 1529, 1699, 1829, 2347
Hin6I GCGC 2 cut(s) 1411, 1971
HinP1I GCGC 2 cut(s) 1411, 1971
HincII GTYRAC 2 cut(s) 100, 412
HindII GTYRAC 2 cut(s) 100, 412
HindIII AAGCTT 2 cut(s) 135, 962
HinfI GANTC 4 cut(s) 373, 1217, 1576, 1706
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 3 cut(s) 379, 901, 2289
HphI GGTGA 6 cut(s) 194, 257, 821, 833, 2024, 2270
Hpy166II GTNNAC 8 cut(s) 91, 100, 412, 672, 1096, 1354, 1918, 1997
Hpy188I TCNGA 9 cut(s) 114, 402, 479, 544, 1102, 1216, 1566, 1581, 2005
Hpy188III TCNNGA 7 cut(s) 367, 603, 623, 836, 980, 1315, 1652
Hpy8I GTNNAC 8 cut(s) 91, 100, 412, 672, 1096, 1354, 1918, 1997
HpyAV CCTTC 9 cut(s) 325, 842, 1021, 1230, 1380, 1651, 1809, 2051, 2280
HpyCH4III ACNGT 5 cut(s) 195, 688, 694, 1066, 1570
HpyCH4IV ACGT 6 cut(s) 450, 536, 627, 1723, 1870, 1914
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 31, 616, 1609, 1940
HpySE526I ACGT 6 cut(s) 450, 536, 627, 1723, 1870, 1914
Hsp92I GRCGYC 1 cut(s) 1971
Hsp92II CATG 9 cut(s) 595, 952, 1027, 1039, 1372, 1529, 1699, 1829, 2347
HspAI GCGC 2 cut(s) 1411, 1971
KasI GGCGCC 1 cut(s) 1970
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
LmnI GCTCC 2 cut(s) 520, 1408
Lsp1109I GCAGC 4 cut(s) 514, 517, 1425, 2344
LweI GCATC 7 cut(s) 221, 343, 727, 1320, 1785, 1830, 2275
MaeI CTAG 6 cut(s) 1149, 1757, 1980, 1986, 2049, 2295
MaeII ACGT 6 cut(s) 450, 536, 627, 1723, 1870, 1914
MaeIII GTNAC 7 cut(s) 639, 688, 715, 821, 857, 1285, 1955
MalI GATC 9 cut(s) 111, 122, 365, 633, 648, 908, 1045, 2016, 2248
MboI GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
MflI RGATCY 1 cut(s) 906
MhlI GDGCHC 3 cut(s) 1143, 1208, 2043
MlsI TGGCCA 1 cut(s) 2115
MluNI TGGCCA 1 cut(s) 2115
Mly113I GGCGCC 1 cut(s) 1971
MlyI GAGTC 2 cut(s) 382, 1226
MmeI TCCRAC 3 cut(s) 1152, 1461, 1500
Mox20I TGGCCA 1 cut(s) 2115
MscI TGGCCA 1 cut(s) 2115
MslI CAYNNNNRTG 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 2115
MspA1I CMGCKG 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 1700
MspI CCGG 3 cut(s) 379, 901, 2289
MspR9I CCNGG 7 cut(s) 179, 230, 747, 781, 2019, 2178, 2290
MvaI CCWGG 6 cut(s) 179, 230, 747, 781, 2019, 2178
MwoI GCNNNNNNNGC 5 cut(s) 22, 31, 616, 1609, 1940
NarI GGCGCC 1 cut(s) 1971
NciI CCSGG 1 cut(s) 2290
NdeI CATATG 2 cut(s) 725, 1016
NdeII GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
NlaIII CATG 9 cut(s) 595, 952, 1027, 1039, 1372, 1529, 1699, 1829, 2347
NlaIV GGNNCC 8 cut(s) 288, 654, 908, 978, 1001, 1123, 1555, 1972
NmuCI GTSAC 2 cut(s) 715, 821
NspI RCATGY 2 cut(s) 1039, 1699
NspV TTCGAA 3 cut(s) 532, 1295, 2235
OliI CACNNNNGTG 1 cut(s) 834
PceI AGGCCT 1 cut(s) 1390
PfeI GAWTC 2 cut(s) 1576, 1706
PfoI TCCNGGA 2 cut(s) 779, 2017
PinAI ACCGGT 1 cut(s) 900
PkrI GCNGC 5 cut(s) 504, 507, 1022, 1415, 2334
PleI GAGTC 2 cut(s) 381, 1225
PluTI GGCGCC 1 cut(s) 1974
PpsI GAGTC 2 cut(s) 381, 1225
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 560
Psp1406I AACGTT 2 cut(s) 450, 1870
Psp6I CCWGG 6 cut(s) 177, 228, 745, 779, 2017, 2176
PspEI GGTNACC 1 cut(s) 857
PspFI CCCAGC 2 cut(s) 290, 1608
PspGI CCWGG 6 cut(s) 177, 228, 745, 779, 2017, 2176
PspN4I GGNNCC 8 cut(s) 288, 654, 908, 978, 1001, 1123, 1555, 1972
PspPI GGNCC 3 cut(s) 1000, 1522, 2291
PsrI GAACNNNNNNTAC 2 cut(s) 938, 970
PstI CTGCAG 2 cut(s) 504, 616
PsuI RGATCY 1 cut(s) 906
RsaI GTAC 6 cut(s) 1081, 1497, 1539, 1984, 2104, 2327
RsaNI GTAC 6 cut(s) 1080, 1496, 1538, 1983, 2103, 2326
RseI CAYNNNNRTG 1 cut(s) 834
SalI GTCGAC 1 cut(s) 410
SatI GCNGC 5 cut(s) 503, 506, 1021, 1414, 2333
Sau3AI GATC 9 cut(s) 109, 120, 363, 631, 646, 906, 1043, 2014, 2246
Sau96I GGNCC 3 cut(s) 1000, 1522, 2291
ScaI AGTACT 2 cut(s) 1497, 1984
SchI GAGTC 2 cut(s) 382, 1226
ScrFI CCNGG 7 cut(s) 179, 230, 747, 781, 2019, 2178, 2290
SduI GDGCHC 3 cut(s) 1143, 1208, 2043
SfaNI GCATC 7 cut(s) 221, 343, 727, 1320, 1785, 1830, 2275
SfcI CTRYAG 2 cut(s) 500, 612
SfoI GGCGCC 1 cut(s) 1972
SfuI TTCGAA 3 cut(s) 532, 1295, 2235
SinI GGWCC 2 cut(s) 1000, 1522
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 3 cut(s) 278, 863, 1700
SmoI CTYRAG 3 cut(s) 278, 863, 1700
SpeI ACTAGT 1 cut(s) 1979
SseBI AGGCCT 1 cut(s) 1390
SsiI CCGC 3 cut(s) 243, 417, 1021
SspDI GGCGCC 1 cut(s) 1970
SspI AATATT 1 cut(s) 586
SspMI CTAG 6 cut(s) 1149, 1757, 1980, 1986, 2049, 2295
StuI AGGCCT 1 cut(s) 1390
StyD4I CCNGG 7 cut(s) 177, 228, 745, 779, 2017, 2176, 2288
StyI CCWWGG 4 cut(s) 811, 1326, 1402, 1844
TaaI ACNGT 5 cut(s) 195, 688, 694, 1066, 1570
TaiI ACGT 6 cut(s) 453, 539, 630, 1726, 1873, 1917
TatI WGTACW 4 cut(s) 1495, 1537, 1982, 2102
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 2 cut(s) 1576, 1706
TscAI CASTG 5 cut(s) 1276, 1770, 1825, 1972, 1996
TseFI GTSAC 2 cut(s) 715, 821
TseI GCWGC 4 cut(s) 502, 505, 1413, 2332
Tsp45I GTSAC 2 cut(s) 715, 821
TspGWI ACGGA 2 cut(s) 1315, 1631
TspRI CASTG 5 cut(s) 1276, 1770, 1825, 1972, 1996
Vha464I CTTAAG 1 cut(s) 1700
VpaK11BI GGWCC 2 cut(s) 1000, 1522
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 3 cut(s) 1010, 1085, 2203
XceI RCATGY 2 cut(s) 1039, 1699
XcmI CCANNNNNNNNNTGG 1 cut(s) 1787
XmiI GTMKAC 2 cut(s) 411, 1353
XspI CTAG 6 cut(s) 1149, 1757, 1980, 1986, 2049, 2295
ZrmI AGTACT 2 cut(s) 1497, 1984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.