Rorug01G0277400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000095
Physical Location & Seq
Forward (+)
39012281 .. 39016032
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0277400.1

Sequence Viewer

Length: 1722 bp
ATGACGATTACTGAATCAGCGAAAGGAAAAACCAGAGGGAAGCGAACTGTGGCTGTAATGTACAAGGTAGTGGTGAAGAAAGCACTTGGGAAGAAATTTAAAGTTACATACAGCGACACGGGCATTCCAAACGGCAGAACACGGCACACTCTACAGTCCTATATAGGCATGTTGGTGCGGACAATGGTTCCCATCAACGTCGAAAGCTGGCCTGAGGTGGATCTTGAATTGAAAGCAAATATTTGGACAGATATTCAAGATACATTCAAAGTAGCCCCTGAAAGCAGAAAACTAGTGTTGTCATCAGCTGACGTGAAATGGAGATACTTCAAGACCACATTAACAAGGAAGTATGTTCTGCCATTCTTGGGAAAAAAGAAAAAATTGAGAAAGCCACCAAAGCAGTACTCCTATGTTGGCCTACAACAGTGGAAGGAATTTGTAAAACAACGGACTAGTGAGGAATGGCTGAAACTTCATCAAAAACAAAGTGAACGAGTGAGGAAGAGAAAGTACCATCACAGATTTTCAAGAAAGGGATACCTTGGACTAGAGGAGGAATTGAAACAAAAGTTGCCTGAAGGAGAGGTAATTGATCGTGCAATTATGTGGAAGAAAGCCCGTATACCAAAAAATGGAAAAATAGATGAAGAACTCTCATTGGTGGCAGCAAAAATAGATGAACTGTTGGAGAAGAAGAGTAAAGGTGAGTTGGAAATCTCAGGGAGTAGTGATGTCTTGTCTCAAGCTCTAGACACTCCTGAACACTCGGGTAGGGTGAGGGGTGTTGGAGGCTTCGTCAACCCATCCTCCTACTTTAATCTACCAAAGAAGAAAAAGATTCGAATTACTATGGCAGATATATTGGCCCGTGATAAGGAGTGTGATAAAGAGTTGGAGGACACAAAGAAAATGCTTCTTGCGCAGCAAGCAAAGACGGAAGCCATGTTATATCAAAGGATTGCACAGCTAGAAGCACTAGTATCTGGGAAGACAACCATGCATCCGCCTGCCACTGGGGACAATGTCATTTCCCCTATATCCGACAAAGGCAGCTTCCATGATAAATCAAGAATTGACAAATCTGATCATAATGATGCCAAGGTCATGGAAAATGTGGAGGAATGTGACATTATACCTACTCCTGGAAAGGGTGCTGGGGAAGGAACTGTTCGTGTATTGGTGGATGGTATACTAAAACCAGATGCGGTGCTTCCTTTCCCCATCGAGGGTGAGATGGAATTCGTTAGGGAAGCTCTTGGGAGTCACTTAGCTTGGCCTGACGATCTTGTTGTGCGGAGAATGTTTAAGAAAAAGAAGAAAAATCCGCAATTCTTCAAGTCATTGTTTGATCAAGTTGAGATTAATCCGTGGGTGCCGAAGCGCTGCAAGTTGTTGTATAAACATGCAACAACTATCATGAAAGAAATGGGGAGCTCAATAAGCACGAAGCATTGGATATTAACTATCCTATGGGAAGGTGAAATCTACATGTTGGATCCGTTGCCAAAACCAGTCCATTACAAAGAATGGGAGACCTCAATGATGAATGCGGTGAAAACCTTCAATGCTGAAACTGGAAGGGTCAACAAACTGTCTAAAGTAAAACCGCTTCCGGGTGTACCTAAACAACCGGGTGGGGTTGAGTGTGGCTATTATGTTACGCTATACATGAAGGAAATTATAGAGGATGAGACACTTTCATTTCCAACCAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

573

Amino Acids

65.6

Weight (kDa)

9.59

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 142 - 269 1e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 1375
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 2 cut(s) 625, 1192
AciI CCGC 7 cut(s) 178, 1007, 1208, 1297, 1328, 1553, 1610
AclWI GGATC 3 cut(s) 228, 1493, 1506
AcsI RAATTY 3 cut(s) 95, 437, 1241
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 4 cut(s) 62, 407, 515, 1623
AfeI AGCGCT 1 cut(s) 1385
AfiI CCNNNNNNNGG 9 cut(s) 368, 635, 877, 1016, 1145, 1151, 1228, 1229, 1616
AflIII ACRYGT 1 cut(s) 1491
AgsI TTSAA 9 cut(s) 227, 232, 257, 268, 331, 531, 565, 1339, 1567
AhlI ACTAGT 3 cut(s) 292, 455, 979
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 1144
AluBI AGCT 8 cut(s) 207, 308, 749, 970, 1056, 1256, 1274, 1437
AluI AGCT 8 cut(s) 207, 308, 749, 970, 1056, 1256, 1274, 1437
Alw21I GWGCWC 1 cut(s) 1439
Alw26I GTCTC 3 cut(s) 747, 1529, 1688
AlwI GGATC 3 cut(s) 228, 1493, 1506
Ama87I CYCGRG 1 cut(s) 769
Aor51HI AGCGCT 1 cut(s) 1385
AoxI GGCC 4 cut(s) 209, 418, 867, 1277
ApeKI GCWGC 4 cut(s) 668, 925, 1053, 1386
ApoI RAATTY 3 cut(s) 95, 437, 1241
AseI ATTAAT 1 cut(s) 1365
Asp700I GAANNNNTTC 1 cut(s) 1562
AspLEI GCGC 2 cut(s) 925, 1386
AspS9I GGNCC 1 cut(s) 868
AsuC2I CCSGG 2 cut(s) 1617, 1635
AsuHPI GGTGA 6 cut(s) 85, 719, 790, 1244, 1493, 1567
AsuII TTCGAA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 769
AxyI CCTNAGG 1 cut(s) 213
BamHI GGATCC 1 cut(s) 1498
BanI GGYRCC 1 cut(s) 1375
BanII GRGCYC 1 cut(s) 1439
BarI GAAGNNNNNNTAC 4 cut(s) 497, 529, 1596, 1628
BbsI GAAGAC 1 cut(s) 998
Bbv12I GWGCWC 1 cut(s) 1439
BbvI GCAGC 4 cut(s) 680, 937, 1065, 1373
BccI CCATC 6 cut(s) 200, 525, 814, 1181, 1231, 1232
BceAI ACGGC 2 cut(s) 148, 158
BciT130I CCWGG 1 cut(s) 1146
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 2 cut(s) 1087, 1351
BcnI CCSGG 2 cut(s) 1617, 1635
BcoDI GTCTC 3 cut(s) 747, 1529, 1688
BcuI ACTAGT 3 cut(s) 292, 455, 979
BfaI CTAG 6 cut(s) 293, 456, 551, 752, 971, 980
BfmI CTRYAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 1387
BfuI GTATCC 1 cut(s) 533
BisI GCNGC 4 cut(s) 669, 926, 1054, 1387
BlsI GCNGC 4 cut(s) 670, 927, 1055, 1388
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 3 cut(s) 1146, 1617, 1635
BmeT110I CYCGRG 1 cut(s) 769
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 3 cut(s) 189, 1377, 1500
BmrFI CCNGG 3 cut(s) 1146, 1617, 1635
BmrI ACTGGG 1 cut(s) 1026
BmsI GCATC 3 cut(s) 1012, 1087, 1195
BmuI ACTGGG 1 cut(s) 1026
BpiI GAAGAC 1 cut(s) 998
Bpu14I TTCGAA 1 cut(s) 844
BpuEI CTTGAG 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 1617, 1635
BsaI GGTCTC 1 cut(s) 1529
BsaJI CCNNGG 3 cut(s) 544, 1101, 1370
BsaXI ACNNNNNCTCC 4 cut(s) 783, 794, 813, 824
Bsc4I CCNNNNNNNGG 9 cut(s) 368, 635, 877, 1016, 1145, 1151, 1228, 1229, 1616
Bse1I ACTGG 3 cut(s) 1021, 1514, 1582
Bse21I CCTNAGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 3 cut(s) 544, 1101, 1370
BseGI GGATG 4 cut(s) 806, 1003, 1192, 1696
BseLI CCNNNNNNNGG 9 cut(s) 368, 635, 877, 1016, 1145, 1151, 1228, 1229, 1616
BseMII CTCAG 2 cut(s) 204, 735
BseNI ACTGG 3 cut(s) 1021, 1514, 1582
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 4 cut(s) 680, 937, 1065, 1373
BseYI CCCAGC 1 cut(s) 1157
BshFI GGCC 4 cut(s) 211, 420, 869, 1279
BshNI GGYRCC 1 cut(s) 1375
BsiHKAI GWGCWC 1 cut(s) 1439
BsiHKCI CYCGRG 1 cut(s) 769
BsiSI CCGG 2 cut(s) 1616, 1634
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 9 cut(s) 368, 635, 877, 1016, 1145, 1151, 1228, 1229, 1616
BsmAI GTCTC 3 cut(s) 747, 1529, 1688
BsmFI GGGAC 1 cut(s) 1034
BsmI GAATGC 2 cut(s) 123, 1555
BsnI GGCC 4 cut(s) 211, 420, 869, 1279
Bso31I GGTCTC 1 cut(s) 1529
BsoBI CYCGRG 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 1439
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
BspACI CCGC 7 cut(s) 178, 1007, 1208, 1297, 1328, 1553, 1610
BspANI GGCC 4 cut(s) 211, 420, 869, 1279
BspCNI CTCAG 2 cut(s) 205, 734
BspHI TCATGA 1 cut(s) 1419
BspLI GGNNCC 3 cut(s) 189, 1377, 1500
BspPI GGATC 3 cut(s) 228, 1493, 1506
BspT104I TTCGAA 1 cut(s) 844
BspT107I GGYRCC 1 cut(s) 1375
BspTNI GGTCTC 1 cut(s) 1529
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 3 cut(s) 1021, 1514, 1582
BssECI CCNNGG 3 cut(s) 544, 1101, 1370
BssMI GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
BssNAI GTATAC 2 cut(s) 626, 1193
BssT1I CCWWGG 2 cut(s) 544, 1101
Bst1107I GTATAC 2 cut(s) 626, 1193
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 6 cut(s) 49, 156, 429, 687, 1171, 1596
Bst6I CTCTTC 2 cut(s) 500, 692
BstAUI TGTACA 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 844
BstC8I GCNNGC 3 cut(s) 209, 930, 1011
BstDEI CTNAG 3 cut(s) 213, 721, 1270
BstDSI CCRYGG 1 cut(s) 1370
BstF5I GGATG 4 cut(s) 806, 1003, 1192, 1696
BstH2I RGCGCY 1 cut(s) 1387
BstHHI GCGC 2 cut(s) 925, 1386
BstKTI GATC 6 cut(s) 223, 598, 1090, 1288, 1354, 1501
BstMAI GTCTC 3 cut(s) 747, 1529, 1688
BstMBI GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
BstMWI GCNNNNNNNGC 5 cut(s) 120, 400, 922, 929, 1443
BstNI CCWGG 1 cut(s) 1146
BstNSI RCATGY 3 cut(s) 172, 1409, 1495
BstSCI CCNGG 3 cut(s) 1144, 1615, 1633
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 4 cut(s) 680, 937, 1065, 1373
BstV2I GAAGAC 1 cut(s) 998
BstX2I RGATCY 2 cut(s) 220, 1498
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 2 cut(s) 220, 1498
BstZ17I GTATAC 2 cut(s) 626, 1193
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 4 cut(s) 211, 420, 869, 1279
BtgI CCRYGG 1 cut(s) 1370
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 4 cut(s) 806, 1003, 1192, 1696
BtsIMutI CAGTG 2 cut(s) 434, 1014
Cac8I GCNNGC 3 cut(s) 209, 930, 1011
CciI TCATGA 1 cut(s) 1419
CfoI GCGC 2 cut(s) 925, 1386
Cfr13I GGNCC 1 cut(s) 868
Csp6I GTAC 4 cut(s) 61, 406, 514, 1622
CviAII CATG 9 cut(s) 169, 946, 1000, 1061, 1108, 1406, 1420, 1492, 1672
CviQI GTAC 4 cut(s) 61, 406, 514, 1622
DdeI CTNAG 3 cut(s) 213, 721, 1270
DpnI GATC 6 cut(s) 222, 597, 1089, 1287, 1353, 1500
DpnII GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
DraI TTTAAA 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 500, 692
EarI CTCTTC 2 cut(s) 500, 692
EciI GGCGGA 1 cut(s) 996
Ecl136II GAGCTC 1 cut(s) 1437
Eco130I CCWWGG 2 cut(s) 544, 1101
Eco24I GRGCYC 1 cut(s) 1439
Eco31I GGTCTC 1 cut(s) 1529
Eco47III AGCGCT 1 cut(s) 1385
Eco53kI GAGCTC 1 cut(s) 1437
Eco57I CTGAAG 1 cut(s) 600
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 1437
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 1 cut(s) 1144
EcoT14I CCWWGG 2 cut(s) 544, 1101
EcoT22I ATGCAT 1 cut(s) 1005
EcoT38I GRGCYC 1 cut(s) 1439
ErhI CCWWGG 2 cut(s) 544, 1101
FaeI CATG 9 cut(s) 172, 949, 1003, 1064, 1111, 1409, 1423, 1495, 1675
FaqI GGGAC 1 cut(s) 1034
FatI CATG 9 cut(s) 168, 945, 999, 1060, 1107, 1405, 1419, 1491, 1671
FbaI TGATCA 2 cut(s) 1087, 1351
FblI GTMKAC 2 cut(s) 625, 1192
Fnu4HI GCNGC 4 cut(s) 669, 926, 1054, 1387
FokI GGATG 4 cut(s) 793, 990, 1199, 1703
FriOI GRGCYC 1 cut(s) 1439
Fsp4HI GCNGC 4 cut(s) 669, 926, 1054, 1387
FspBI CTAG 6 cut(s) 293, 456, 551, 752, 971, 980
FspI TGCGCA 1 cut(s) 924
GlaI GCGC 2 cut(s) 924, 1385
GluI GCNGC 4 cut(s) 669, 926, 1054, 1387
GsaI CCCAGC 1 cut(s) 1161
HaeII RGCGCY 1 cut(s) 1387
HaeIII GGCC 4 cut(s) 211, 420, 869, 1279
HapII CCGG 2 cut(s) 1616, 1634
HhaI GCGC 2 cut(s) 925, 1386
Hin1II CATG 9 cut(s) 172, 949, 1003, 1064, 1111, 1409, 1423, 1495, 1675
Hin6I GCGC 2 cut(s) 923, 1384
HinP1I GCGC 2 cut(s) 923, 1384
HincII GTYRAC 2 cut(s) 802, 1588
HindII GTYRAC 2 cut(s) 802, 1588
HinfI GANTC 3 cut(s) 14, 841, 1264
HpaII CCGG 2 cut(s) 1616, 1634
HphI GGTGA 6 cut(s) 85, 719, 790, 1244, 1493, 1567
Hpy166II GTNNAC 6 cut(s) 494, 626, 802, 1193, 1588, 1622
Hpy188I TCNGA 2 cut(s) 1045, 1087
Hpy188III TCNNGA 8 cut(s) 224, 257, 331, 531, 752, 761, 1071, 1420
Hpy8I GTNNAC 6 cut(s) 494, 626, 802, 1193, 1588, 1622
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 7 cut(s) 427, 575, 1157, 1472, 1573, 1575, 1669
HpyCH4III ACNGT 6 cut(s) 49, 156, 429, 687, 1171, 1596
HpyCH4IV ACGT 2 cut(s) 198, 312
HpyCH4V TGCA 5 cut(s) 602, 965, 1003, 1389, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 400, 922, 929, 1443
HpyF3I CTNAG 3 cut(s) 213, 721, 1270
HpySE526I ACGT 2 cut(s) 198, 312
Hsp92II CATG 9 cut(s) 172, 949, 1003, 1064, 1111, 1409, 1423, 1495, 1675
HspAI GCGC 2 cut(s) 923, 1384
Ksp22I TGATCA 2 cut(s) 1087, 1351
Kzo9I GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
LmnI GCTCC 1 cut(s) 1434
Lsp1109I GCAGC 4 cut(s) 680, 937, 1065, 1373
LweI GCATC 3 cut(s) 1012, 1087, 1195
MaeI CTAG 6 cut(s) 293, 456, 551, 752, 971, 980
MaeII ACGT 2 cut(s) 198, 312
MaeIII GTNAC 4 cut(s) 103, 1127, 1265, 1660
MalI GATC 6 cut(s) 222, 597, 1089, 1287, 1353, 1500
MboI GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
MflI RGATCY 2 cut(s) 220, 1498
MhlI GDGCHC 1 cut(s) 1439
MlyI GAGTC 1 cut(s) 1273
MmeI TCCRAC 6 cut(s) 669, 693, 769, 876, 1068, 1476
Mph1103I ATGCAT 1 cut(s) 1005
MroXI GAANNNNTTC 1 cut(s) 1562
MseI TTAA 6 cut(s) 99, 341, 819, 1308, 1365, 1463
MslI CAYNNNNRTG 2 cut(s) 173, 1095
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 1616, 1634
MspR9I CCNGG 3 cut(s) 1146, 1617, 1635
Mva1269I GAATGC 2 cut(s) 123, 1555
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 5 cut(s) 120, 400, 922, 929, 1443
NciI CCSGG 2 cut(s) 1617, 1635
NdeII GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
NlaIII CATG 9 cut(s) 172, 949, 1003, 1064, 1111, 1409, 1423, 1495, 1675
NlaIV GGNNCC 3 cut(s) 189, 1377, 1500
NmuCI GTSAC 2 cut(s) 1127, 1265
NsbI TGCGCA 1 cut(s) 924
NsiI ATGCAT 1 cut(s) 1005
NspI RCATGY 3 cut(s) 172, 1409, 1495
NspV TTCGAA 1 cut(s) 844
PagI TCATGA 1 cut(s) 1419
PciI ACATGT 1 cut(s) 1491
PctI GAATGC 2 cut(s) 123, 1555
PdmI GAANNNNTTC 1 cut(s) 1562
PfeI GAWTC 2 cut(s) 14, 841
PflFI GACNNNGTC 1 cut(s) 1025
PflMI CCANNNNNTGG 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 4 cut(s) 670, 927, 1055, 1388
PleI GAGTC 1 cut(s) 1272
PpsI GAGTC 1 cut(s) 1272
PscI ACATGT 1 cut(s) 1491
PshBI ATTAAT 1 cut(s) 1365
Psp124BI GAGCTC 1 cut(s) 1439
Psp6I CCWGG 1 cut(s) 1144
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 3 cut(s) 189, 1377, 1500
PspPI GGNCC 1 cut(s) 868
PsuI RGATCY 2 cut(s) 220, 1498
PsyI GACNNNGTC 1 cut(s) 1025
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 4 cut(s) 62, 407, 515, 1623
RsaNI GTAC 4 cut(s) 61, 406, 514, 1622
RseI CAYNNNNRTG 2 cut(s) 173, 1095
SacI GAGCTC 1 cut(s) 1439
SaqAI TTAA 6 cut(s) 99, 341, 819, 1308, 1365, 1463
SatI GCNGC 4 cut(s) 669, 926, 1054, 1387
Sau3AI GATC 6 cut(s) 220, 595, 1087, 1285, 1351, 1498
Sau96I GGNCC 1 cut(s) 868
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 1 cut(s) 1273
ScrFI CCNGG 3 cut(s) 1146, 1617, 1635
SduI GDGCHC 1 cut(s) 1439
SfaNI GCATC 3 cut(s) 1012, 1087, 1195
SfcI CTRYAG 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 844
SmiMI CAYNNNNRTG 2 cut(s) 173, 1095
SmlI CTYRAG 1 cut(s) 744
SmoI CTYRAG 1 cut(s) 744
SpeI ACTAGT 3 cut(s) 292, 455, 979
SsiI CCGC 7 cut(s) 178, 1007, 1208, 1297, 1328, 1553, 1610
SspI AATATT 1 cut(s) 241
SspMI CTAG 6 cut(s) 293, 456, 551, 752, 971, 980
SstI GAGCTC 1 cut(s) 1439
StyD4I CCNGG 3 cut(s) 1144, 1615, 1633
StyI CCWWGG 2 cut(s) 544, 1101
TaaI ACNGT 6 cut(s) 49, 156, 429, 687, 1171, 1596
TaiI ACGT 2 cut(s) 201, 315
TaqI TCGA 3 cut(s) 201, 844, 1227
TatI WGTACW 2 cut(s) 60, 405
TfiI GAWTC 2 cut(s) 14, 841
Tru1I TTAA 6 cut(s) 99, 341, 819, 1308, 1365, 1463
Tru9I TTAA 6 cut(s) 99, 341, 819, 1308, 1365, 1463
TscAI CASTG 2 cut(s) 434, 1021
TseFI GTSAC 2 cut(s) 1127, 1265
TseI GCWGC 4 cut(s) 668, 925, 1053, 1386
Tsp45I GTSAC 2 cut(s) 1127, 1265
TspDTI ATGAA 7 cut(s) 467, 663, 696, 1436, 1562, 1688, 1692
TspGWI ACGGA 4 cut(s) 466, 953, 1359, 1491
TspRI CASTG 2 cut(s) 434, 1021
Tth111I GACNNNGTC 1 cut(s) 1025
Van91I CCANNNNNTGG 1 cut(s) 635
VspI ATTAAT 1 cut(s) 1365
XapI RAATTY 3 cut(s) 95, 437, 1241
XbaI TCTAGA 1 cut(s) 751
XceI RCATGY 3 cut(s) 172, 1409, 1495
XmiI GTMKAC 2 cut(s) 625, 1192
XmnI GAANNNNTTC 1 cut(s) 1562
XspI CTAG 6 cut(s) 293, 456, 551, 752, 971, 980
ZrmI AGTACT 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.