Rroxscaffold_6G00403030

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000095
Physical Location & Seq
Forward (+)
25500677 .. 25502491
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403030.1

Sequence Viewer

Length: 633 bp
ATGTGTGACACAAACCTTGTTTCATTCACTTTTATTGGGGGCGAGAGAGACTTGCTTCTCACTAATGTACCATTTCTTGTTGAGGTTTCCATTTCTGAGTATGACCTTCGTACCGAGTTAATAACGCTTGTCTTCTTCCAACTTTCATGCTGTCTTTCTCAGCTCCAGATTCTCACATTGGATATCACTCCATCGGTCTCCAGTTTTTTCCTTGGGCCAGTTGAAGCTGGTTATCCTTGGGTTCTTCATCAATTGGCTTTTTTCATGAAGGCATCTCCTTTCTTGGAGAGACTTGTGTTGAAGTTACAATTTCCGACTCCAAGATTTTGGCAAAGACCCGATCAAAGAAGGAAAATAGAGAAATCTTTTAATTGTCAGCATCATTTCCTTAAGGTAGTAGAAATAATAGGGTATCTTGGCCGTGCTGATACTCATGTCATGTTCTTAACAAGGAATGCTGTTTCGTTGGAGAAAATTGTTATTGATCCTGTTCGGCGTTGGTTGTTTCCTCATGGAATGGACACAGATAGAGGAATTAAAGAAATTGCCAAGGAAGTGAAGGCACGAGCTCATGCCATGCAGAAGCTGAAAGAAAAATTGCCTTCAACTATTGAATTTGTATGCCTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

210

Amino Acids

24.33

Weight (kDa)

8.83

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 1 cut(s) 614
AfaI GTAC 2 cut(s) 69, 112
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 224, 301, 606, 614
AluBI AGCT 4 cut(s) 163, 227, 569, 586
AluI AGCT 4 cut(s) 163, 227, 569, 586
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 3 cut(s) 42, 202, 283
AlwI GGATC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 586
AoxI GGCC 2 cut(s) 215, 418
ApoI RAATTY 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 215
BaeI ACNNNNGTAYC 6 cut(s) 51, 84, 94, 127, 420, 453
BanII GRGCYC 1 cut(s) 571
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 571
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 42, 202, 283
BfrI CTTAAG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 215
BmsI GCATC 2 cut(s) 281, 388
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 2 cut(s) 149, 184
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 211, 236, 549
Bse1I ACTGG 2 cut(s) 201, 218
BseDI CCNNGG 3 cut(s) 211, 236, 549
BseMII CTCAG 2 cut(s) 87, 173
BseNI ACTGG 2 cut(s) 201, 218
BshFI GGCC 2 cut(s) 217, 420
BsiHKAI GWGCWC 1 cut(s) 571
BsmAI GTCTC 3 cut(s) 42, 202, 283
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 217, 420
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 2 cut(s) 340, 484
BspANI GGCC 2 cut(s) 217, 420
BspCNI CTCAG 2 cut(s) 88, 172
BspHI TCATGA 1 cut(s) 264
BspPI GGATC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 2 cut(s) 201, 218
BssECI CCNNGG 3 cut(s) 211, 236, 549
BssMI GATC 2 cut(s) 340, 484
BssSI CACGAG 1 cut(s) 564
BssT1I CCWWGG 3 cut(s) 211, 236, 549
Bst2BI CACGAG 1 cut(s) 564
BstAFI CTTAAG 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 96, 159
BstKTI GATC 2 cut(s) 343, 487
BstMAI GTCTC 3 cut(s) 42, 202, 283
BstMBI GATC 2 cut(s) 340, 484
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 217, 420
CaiI CAGNNNCTG 1 cut(s) 586
CciI TCATGA 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 68, 111
CviAII CATG 7 cut(s) 147, 265, 434, 439, 512, 572, 577
CviJI RGCY 7 cut(s) 163, 217, 227, 257, 420, 569, 586
CviKI_1 RGCY 7 cut(s) 163, 217, 227, 257, 420, 569, 586
CviQI GTAC 2 cut(s) 68, 111
DdeI CTNAG 2 cut(s) 96, 159
DpnI GATC 2 cut(s) 342, 486
DpnII GATC 2 cut(s) 340, 484
EaeI YGGCCR 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 3 cut(s) 211, 236, 549
Eco24I GRGCYC 1 cut(s) 571
Eco31I GGTCTC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 3 cut(s) 211, 236, 549
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 3 cut(s) 211, 236, 549
FaeI CATG 7 cut(s) 150, 268, 437, 442, 515, 575, 580
FaiI YATR 9 cut(s) 102, 148, 266, 435, 440, 513, 573, 578, 622
FatI CATG 7 cut(s) 146, 264, 433, 438, 511, 571, 576
FriOI GRGCYC 1 cut(s) 571
GsuI CTGGAG 2 cut(s) 149, 184
HaeIII GGCC 2 cut(s) 217, 420
Hin1II CATG 7 cut(s) 150, 268, 437, 442, 515, 575, 580
HinfI GANTC 2 cut(s) 169, 316
Hpy188I TCNGA 2 cut(s) 97, 315
Hpy188III TCNNGA 2 cut(s) 166, 265
HpyAV CCTTC 5 cut(s) 116, 262, 342, 553, 612
HpyCH4V TGCA 1 cut(s) 580
HpyF3I CTNAG 2 cut(s) 96, 159
Hsp92II CATG 7 cut(s) 150, 268, 437, 442, 515, 575, 580
Kzo9I GATC 2 cut(s) 340, 484
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 179, 213, 214, 231, 501
LweI GCATC 2 cut(s) 281, 388
MaeIII GTNAC 2 cut(s) 5, 303
MalI GATC 2 cut(s) 342, 486
MboI GATC 2 cut(s) 340, 484
MboII GAAGA 3 cut(s) 124, 127, 236
MfeI CAATTG 1 cut(s) 251
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 8 cut(s) 251, 308, 370, 474, 534, 543, 596, 614
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 3 cut(s) 163, 338, 447
MnlI CCTC 3 cut(s) 76, 519, 524
MseI TTAA 5 cut(s) 119, 369, 390, 446, 537
MspCI CTTAAG 1 cut(s) 389
MunI CAATTG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 460
NdeII GATC 2 cut(s) 340, 484
NlaIII CATG 7 cut(s) 150, 268, 437, 442, 515, 575, 580
NmuCI GTSAC 1 cut(s) 5
PagI TCATGA 1 cut(s) 264
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 1 cut(s) 169
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 586
RsaI GTAC 2 cut(s) 69, 112
RsaNI GTAC 2 cut(s) 68, 111
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 5 cut(s) 119, 369, 390, 446, 537
Sau3AI GATC 2 cut(s) 340, 484
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 571
SetI ASST 8 cut(s) 18, 87, 108, 165, 229, 396, 571, 588
SfaNI GCATC 2 cut(s) 281, 388
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 8 cut(s) 251, 308, 370, 474, 534, 543, 596, 614
SstI GAGCTC 1 cut(s) 571
StyI CCWWGG 3 cut(s) 211, 236, 549
TaqII GACCGA 1 cut(s) 184
TasI AATT 8 cut(s) 251, 308, 370, 474, 534, 543, 596, 614
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 5 cut(s) 119, 369, 390, 446, 537
Tru9I TTAA 5 cut(s) 119, 369, 390, 446, 537
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 12, 135, 236, 253, 281
Vha464I CTTAAG 1 cut(s) 389
XapI RAATTY 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.