Rorug01G0277200

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
38943456 .. 38943920
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0277200.1

Sequence Viewer

Length: 465 bp
ATGAAGTACCACTTTTGTTCTTCAGGTTCTTTTCTCTCCATCTTCATCATTCTTGTGACAATCTGTTTGAGCATTGAAGCTCGAACCTACAATCCAAATGGCAAAATAGTCGGTAAAAAGCCTCCAGTATCTGAGCGTACAAAAGCAACCTTGACAATCAACAGCTTCGAGAAAGGTGGTGATGGTGGTGGACCGTCCGAATGTGACGGTAAATACCACTCCAATAAGCTTCTGATCGTGGCATTGTCCACCAGGTGGTACAACAATGGGAAGAGGTGTTCACACTACATTACCATATATGGTAATGGAAAGAGTGTGAAAGCCAAGGTTGTTGATGAATGTGACTCAACAAGAGGATGTGACGATGACATCGTTGATGCCTCTAAAGCTGTTTGGAAGGCCCTGGGAGTTAAGGAAGGCAGCAGCGACTGGGGTGAAATGCAAATATTCTGGTCCGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

8.49

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 38 - 154 1.3e-33 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 3 cut(s) 8, 139, 260
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 2 cut(s) 251, 402
AloI GAACNNNNNNTCC 4 cut(s) 76, 108, 262, 294
AluBI AGCT 4 cut(s) 80, 165, 229, 389
AluI AGCT 4 cut(s) 80, 165, 229, 389
AlwNI CAGNNNCTG 2 cut(s) 131, 429
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 420, 423
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AspS9I GGNCC 3 cut(s) 191, 400, 453
AsuHPI GGTGA 2 cut(s) 191, 446
AvaII GGWCC 2 cut(s) 191, 453
BbvI GCAGC 2 cut(s) 432, 435
BccI CCATC 2 cut(s) 47, 176
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 2 cut(s) 253, 404
BisI GCNGC 2 cut(s) 421, 424
BlsI GCNGC 2 cut(s) 422, 425
Bme1390I CCNGG 2 cut(s) 253, 404
Bme18I GGWCC 2 cut(s) 191, 453
BmgT120I GGNCC 3 cut(s) 191, 400, 453
BmrFI CCNGG 2 cut(s) 253, 404
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 367, 448
BmuI ACTGGG 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 324, 402, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 125, 434
BseBI CCWGG 2 cut(s) 253, 404
BseDI CCNNGG 3 cut(s) 324, 402, 403
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 125, 434
BseXI GCAGC 2 cut(s) 432, 435
BshFI GGCC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 255
BsnI GGCC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 234
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 124
BsrI ACTGG 2 cut(s) 125, 434
BssECI CCNNGG 3 cut(s) 324, 402, 403
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 253, 404
Bst4CI ACNGT 2 cut(s) 195, 209
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 253, 404
BstSCI CCNGG 2 cut(s) 251, 402
BstV1I GCAGC 2 cut(s) 432, 435
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 362
CaiI CAGNNNCTG 2 cut(s) 131, 429
Cfr13I GGNCC 3 cut(s) 191, 400, 453
CsiI ACCWGGT 1 cut(s) 251
Csp6I GTAC 3 cut(s) 7, 138, 259
CviJI RGCY 7 cut(s) 80, 121, 165, 229, 323, 389, 401
CviKI_1 RGCY 7 cut(s) 80, 121, 165, 229, 323, 389, 401
CviQI GTAC 3 cut(s) 7, 138, 259
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 191, 453
Eco57I CTGAAG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 251, 402
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 3 cut(s) 296, 298, 300
FalI AAGNNNNNCTT 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 421, 424
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 421, 424
GluI GCNGC 2 cut(s) 421, 424
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 344
HphI GGTGA 2 cut(s) 191, 446
Hpy166II GTNNAC 3 cut(s) 191, 249, 281
Hpy188I TCNGA 4 cut(s) 133, 199, 234, 457
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 3 cut(s) 191, 249, 281
HpyAV CCTTC 2 cut(s) 391, 410
HpyCH4III ACNGT 2 cut(s) 195, 209
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 8 cut(s) 9, 138, 238, 265, 389, 415, 416, 436
Lsp1109I GCAGC 2 cut(s) 432, 435
LweI GCATC 2 cut(s) 367, 448
MabI ACCWGGT 1 cut(s) 251
MaeIII GTNAC 4 cut(s) 55, 203, 341, 359
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 3 cut(s) 12, 34, 283
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 132, 267, 347, 391
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 253, 404
MvaI CCWGG 2 cut(s) 253, 404
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 234
NmuCI GTSAC 4 cut(s) 55, 203, 341, 359
PasI CCCWGGG 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 2 cut(s) 422, 425
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 251, 402
PspGI CCWGG 2 cut(s) 251, 402
PspPI GGNCC 3 cut(s) 191, 400, 453
PstNI CAGNNNCTG 2 cut(s) 131, 429
RsaI GTAC 3 cut(s) 8, 139, 260
RsaNI GTAC 3 cut(s) 7, 138, 259
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 421, 424
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 3 cut(s) 191, 400, 453
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 253, 404
SexAI ACCWGGT 1 cut(s) 251
SfaNI GCATC 2 cut(s) 367, 448
SinI GGWCC 2 cut(s) 191, 453
SmiMI CAYNNNNRTG 1 cut(s) 53
SspI AATATT 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 251, 402
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 195, 209
TaqI TCGA 2 cut(s) 82, 168
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 4 cut(s) 55, 203, 341, 359
TseI GCWGC 2 cut(s) 420, 423
Tsp45I GTSAC 4 cut(s) 55, 203, 341, 359
TspDTI ATGAA 3 cut(s) 17, 34, 351
Van91I CCANNNNNTGG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 191, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.