Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000095

Physical Location & Seq

Genomic Coordinates Forward (+)

1332260 .. 1336405

Gene Structure 4146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGTCATTTCAAGACAAAAAAAAAGAAGAAGATTAATTTCAGTTTATCCCCCTGACGATTATATGGTGGACAGGGTCAGTGCATTGCCCGATGACATTCTTGTTAGTTTAGTGTCCCGCTTGCCGCTAAAGGAAGCAGTAGCTACCAGTGTCCTTTCTAGGCGATGGCAGAATGTGGGACTGTCTACTATGAACCTTAGGTTTGATGCTGTTGACGGCTCAACTGACAATAATTTCCGCCACTACCCTTGGAAACTAAAAGAAGCTATAGAGTACTGGAAGCGCTGGAAATACATCGATTGGGTGAATCGTGTGGTGCAACAGCATAGAGGGAAACATATAGAAGAATTCAGGATCAGCCTCCCTTTAGATAGTCGCTTTTCAAGTTCCATTAATGAATGGATTCAATTTGCAATGGAAAAGAGTGTCGAAAGGCTTGAGTTGGATTTTGATCTAGCAGTTTCTACTAGATTTGAAGATTATACATTTCCCCACAAACTTTGGGGATCTGCTTTCCAATCCCTCAAAGTTCTTCAGATCCGACATGTTGGTGTGACTGGAGAAGTTCTCGAGTATTTCCTGTCCAACTGTCCATTACTCGAGAGATTATCAGTCACTTGCGCAAAAGGTTTGGTTAATTTAAGAGTTGTTGGTTCATCGATTTCGTTGAAGTATTTGGTGATACAAAATTGTCATAACCTGGAAAGCATTGAAATCAGAGACGTAAACATCGTTTCATTTATTTATTGTGGATATCGTTCAACAAATATCAGTAACGTACCATTGCTTTCTGAGGTAACCGTTTCTAATCGGTGTTGTCCAAAGGATTTTATAAGGGTTGTGTTGAACCAACTTTCCTGCTGTCTTTCCAACATAGAGATTCTGAAGCTGCATCTCCAGCTGGGAGCGGTTAGTATATGTTGTCATAATGTGCCAAATCCTGTATTGCCTCTATTTGCAAATCTGAAGCATTTGGAATTACTAGTTGTAGCAAATTATTATAAGGCACTTCATCATTTAAATAGCTTCCTCAAGGCATCTCCTTACTTGCAGAGACTCGTATTGAAGTTGCAGCTGTATTCGGAGAGAGCATGCATGGGAATGGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGCTATCGAGCTCATAAATCTGGTGTTGAACTTGTCATGCACTTAATAAAGAATGGTCTTGGACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGAGACACCCTAATGGAGCTGATAAGCCACATACAGAACTCGATGAAGAAGTGAAGGCAAGAGATCATGCTAAGCAATACCTTGAAGCAAAAATGCCTTCAACTGTAGAATTTGTGTGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016874 GO:0016879 GO:0016880 GO:0017178 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

Diphthami_syn_2 Ribonuc_L-PSP

Protein Analysis

461

Amino Acids

53.0

Weight (kDa)

8.83

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	158 - 242	7.1e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	172 - 458	1.2e-35	At1g61320/AtMIF1, LRR domain
FBD	PF08387	376 - 415	1.5e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica	MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica	Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis	pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis	RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata	RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora	Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii	Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa	Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha	Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana	Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	833, 1002
Acc16I	TGCGCA	1 cut(s)	622
AccBSI	CCGCTC	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	4 cut(s)	118, 125, 238, 908
AclWI	GGATC	4 cut(s)	362, 514, 532, 1241
AcsI	RAATTY	2 cut(s)	347, 1370
AcuI	CTGAAG	3 cut(s)	518, 905, 986
AfaI	GTAC	3 cut(s)	275, 780, 1254
AfeI	AGCGCT	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	544
AhlI	ACTAGT	1 cut(s)	982
AjnI	CCWGG	1 cut(s)	699
AloI	GAACNNNNNNTCC	2 cut(s)	839, 871
AluBI	AGCT	9 cut(s)	143, 266, 889, 901, 1026, 1075, 1124, 1175, 1280
AluI	AGCT	9 cut(s)	143, 266, 889, 901, 1026, 1075, 1124, 1175, 1280
Alw21I	GWGCWC	1 cut(s)	1177
Alw26I	GTCTC	3 cut(s)	714, 1048, 1258
AlwI	GGATC	4 cut(s)	362, 514, 532, 1241
Ama87I	CYCGRG	2 cut(s)	569, 599
Aor51HI	AGCGCT	1 cut(s)	284
ApeKI	GCWGC	3 cut(s)	889, 1072, 1121
ApoI	RAATTY	2 cut(s)	347, 1370
AseI	ATTAAT	2 cut(s)	35, 393
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	285, 623
AsuHPI	GGTGA	3 cut(s)	316, 691, 1133
AvaI	CYCGRG	2 cut(s)	569, 599
AxyI	CCTNAGG	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	1177
Bbv12I	GWGCWC	1 cut(s)	1177
BbvI	GCAGC	3 cut(s)	876, 1084, 1133
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	701
BcoDI	GTCTC	3 cut(s)	714, 1048, 1258
BcuI	ACTAGT	1 cut(s)	982
BfaI	CTAG	4 cut(s)	159, 455, 468, 983
BfmI	CTRYAG	3 cut(s)	267, 1365, 1382
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	4 cut(s)	125, 890, 1073, 1122
BlpI	GCTNAGC	1 cut(s)	1332
BlsI	GCNGC	4 cut(s)	126, 891, 1074, 1123
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	701
BmeT110I	CYCGRG	2 cut(s)	569, 599
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	3 cut(s)	196, 901, 1046
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	3 cut(s)	579, 881, 1250
Bpu1102I	GCTNAGC	1 cut(s)	1332
BpuEI	CTTGAG	3 cut(s)	458, 1016, 1130
Bsa29I	ATCGAT	2 cut(s)	297, 659
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	248
Bse1I	ACTGG	4 cut(s)	147, 281, 562, 1233
Bse21I	CCTNAGG	1 cut(s)	197
Bse3DI	GCAATG	3 cut(s)	83, 420, 782
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	701
BseCI	ATCGAT	2 cut(s)	297, 659
BseDI	CCNNGG	1 cut(s)	248
BseJI	GATNNNNATC	1 cut(s)	450
BseMI	GCAATG	3 cut(s)	83, 420, 782
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	4 cut(s)	147, 281, 562, 1233
BseXI	GCAGC	3 cut(s)	876, 1084, 1133
BseYI	CCCAGC	1 cut(s)	901
BshVI	ATCGAT	2 cut(s)	297, 659
BsiHKAI	GWGCWC	1 cut(s)	1177
BsiHKCI	CYCGRG	2 cut(s)	569, 599
BslFI	GGGAC	2 cut(s)	100, 192
BsmAI	GTCTC	3 cut(s)	714, 1048, 1258
BsmBI	CGTCTC	1 cut(s)	714
BsmFI	GGGAC	2 cut(s)	100, 192
BsoBI	CYCGRG	2 cut(s)	569, 599
Bsp1286I	GDGCHC	1 cut(s)	1177
Bsp143I	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
Bsp1720I	GCTNAGC	1 cut(s)	1332
BspACI	CCGC	4 cut(s)	118, 125, 238, 908
BspCNI	CTCAG	1 cut(s)	784
BspDI	ATCGAT	2 cut(s)	297, 659
BspPI	GGATC	4 cut(s)	362, 514, 532, 1241
BsrBI	CCGCTC	1 cut(s)	908
BsrDI	GCAATG	3 cut(s)	83, 420, 782
BsrI	ACTGG	4 cut(s)	147, 281, 562, 1233
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	4 cut(s)	183, 590, 802, 1366
BstC8I	GCNNGC	2 cut(s)	122, 1093
BstDEI	CTNAG	3 cut(s)	197, 792, 1332
BstEII	GGTNACC	1 cut(s)	796
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	285, 623
BstKTI	GATC	6 cut(s)	357, 454, 509, 540, 1249, 1327
BstMAI	GTCTC	3 cut(s)	714, 1048, 1258
BstMBI	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
BstMWI	GCNNNNNNNGC	1 cut(s)	898
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	548, 1095
BstPI	GGTNACC	1 cut(s)	796
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	3 cut(s)	267, 1365, 1382
BstV1I	GCAGC	3 cut(s)	876, 1084, 1133
BstX2I	RGATCY	2 cut(s)	506, 537
BstYI	RGATCY	2 cut(s)	506, 537
Bsu15I	ATCGAT	2 cut(s)	297, 659
Bsu36I	CCTNAGG	1 cut(s)	197
BsuTUI	ATCGAT	2 cut(s)	297, 659
BtgZI	GCGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	85, 154
Cac8I	GCNNGC	2 cut(s)	122, 1093
CfoI	GCGC	2 cut(s)	285, 623
ClaI	ATCGAT	2 cut(s)	297, 659
Csp6I	GTAC	3 cut(s)	274, 779, 1253
CspCI	CAANNNNNGTGG	4 cut(s)	230, 265, 482, 517
CviAII	CATG	6 cut(s)	545, 1092, 1096, 1201, 1260, 1328
CviQI	GTAC	3 cut(s)	274, 779, 1253
DdeI	CTNAG	3 cut(s)	197, 792, 1332
DpnI	GATC	6 cut(s)	356, 453, 508, 539, 1248, 1326
DpnII	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
DraI	TTTAAA	1 cut(s)	1020
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	1175
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	1177
Eco32I	GATATC	1 cut(s)	755
Eco47III	AGCGCT	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	1175
Eco57I	CTGAAG	3 cut(s)	518, 905, 986
Eco81I	CCTNAGG	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	569, 599
Eco91I	GGTNACC	1 cut(s)	796
EcoICRI	GAGCTC	1 cut(s)	1175
EcoO65I	GGTNACC	1 cut(s)	796
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	1097
EcoT38I	GRGCYC	1 cut(s)	1177
ErhI	CCWWGG	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	6 cut(s)	548, 1095, 1099, 1204, 1263, 1331
FaqI	GGGAC	2 cut(s)	100, 192
FatI	CATG	6 cut(s)	544, 1091, 1095, 1200, 1259, 1327
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	4 cut(s)	125, 890, 1073, 1122
FriOI	GRGCYC	1 cut(s)	1177
Fsp4HI	GCNGC	4 cut(s)	125, 890, 1073, 1122
FspBI	CTAG	4 cut(s)	159, 455, 468, 983
FspI	TGCGCA	1 cut(s)	622
GlaI	GCGC	2 cut(s)	284, 622
GluI	GCNGC	4 cut(s)	125, 890, 1073, 1122
GsaI	CCCAGC	1 cut(s)	905
GsuI	CTGGAG	3 cut(s)	579, 881, 1250
HaeII	RGCGCY	1 cut(s)	286
HhaI	GCGC	2 cut(s)	285, 623
Hin1II	CATG	6 cut(s)	548, 1095, 1099, 1204, 1263, 1331
Hin6I	GCGC	2 cut(s)	283, 621
HinP1I	GCGC	2 cut(s)	283, 621
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	307, 403, 880, 1056
HphI	GGTGA	3 cut(s)	316, 691, 1133
Hpy166II	GTNNAC	4 cut(s)	70, 186, 214, 727
Hpy188I	TCNGA	7 cut(s)	537, 542, 719, 793, 885, 966, 1084
Hpy188III	TCNNGA	4 cut(s)	12, 352, 569, 601
Hpy8I	GTNNAC	4 cut(s)	70, 186, 214, 727
HpyAV	CCTTC	2 cut(s)	1309, 1368
HpyCH4III	ACNGT	4 cut(s)	183, 590, 802, 1366
HpyCH4IV	ACGT	2 cut(s)	723, 777
HpyCH4V	TGCA	9 cut(s)	83, 319, 413, 892, 959, 1051, 1072, 1095, 1204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	898
HpyF3I	CTNAG	3 cut(s)	197, 792, 1332
HpySE526I	ACGT	2 cut(s)	723, 777
Hsp92II	CATG	6 cut(s)	548, 1095, 1099, 1204, 1263, 1331
HspAI	GCGC	2 cut(s)	283, 621
Kzo9I	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
LmnI	GCTCC	2 cut(s)	905, 1277
Lsp1109I	GCAGC	3 cut(s)	876, 1084, 1133
LweI	GCATC	3 cut(s)	196, 901, 1046
MaeI	CTAG	4 cut(s)	159, 455, 468, 983
MaeII	ACGT	2 cut(s)	723, 777
MaeIII	GTNAC	4 cut(s)	553, 613, 773, 796
MalI	GATC	6 cut(s)	356, 453, 508, 539, 1248, 1326
MbiI	CCGCTC	1 cut(s)	908
MboI	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
MboII	GAAGA	6 cut(s)	39, 42, 356, 488, 524, 1319
MflI	RGATCY	2 cut(s)	506, 537
MhlI	GDGCHC	1 cut(s)	1177
MlyI	GAGTC	1 cut(s)	1050
MmeI	TCCRAC	4 cut(s)	423, 565, 609, 894
MnlI	CCTC	7 cut(s)	323, 371, 533, 787, 960, 1040, 1154
Mph1103I	ATGCAT	1 cut(s)	1097
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	6 cut(s)	35, 393, 636, 641, 1019, 1208
MslI	CAYNNNNRTG	3 cut(s)	549, 1100, 1272
MspA1I	CMGCKG	3 cut(s)	901, 1075, 1124
MspR9I	CCNGG	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	898
NdeII	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
NlaIII	CATG	6 cut(s)	548, 1095, 1099, 1204, 1263, 1331
NmuCI	GTSAC	2 cut(s)	553, 613
NsbI	TGCGCA	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	1097
NspI	RCATGY	2 cut(s)	548, 1095
PaeI	GCATGC	1 cut(s)	1095
PaeR7I	CTCGAG	2 cut(s)	569, 599
PciI	ACATGT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	307, 403, 880
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	126, 891, 1074, 1123
PleI	GAGTC	1 cut(s)	1050
PpsI	GAGTC	1 cut(s)	1050
PscI	ACATGT	1 cut(s)	544
PshBI	ATTAAT	2 cut(s)	35, 393
PsiI	TTATAA	2 cut(s)	833, 1002
Psp124BI	GAGCTC	1 cut(s)	1177
Psp6I	CCWGG	1 cut(s)	699
PspEI	GGTNACC	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	506, 537
PsyI	GACNNNGTC	1 cut(s)	74
PvuII	CAGCTG	3 cut(s)	901, 1075, 1124
RsaI	GTAC	3 cut(s)	275, 780, 1254
RsaNI	GTAC	3 cut(s)	274, 779, 1253
RseI	CAYNNNNRTG	3 cut(s)	549, 1100, 1272
SacI	GAGCTC	1 cut(s)	1177
SaqAI	TTAA	6 cut(s)	35, 393, 636, 641, 1019, 1208
SatI	GCNGC	4 cut(s)	125, 890, 1073, 1122
Sau3AI	GATC	6 cut(s)	354, 451, 506, 537, 1246, 1324
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	1050
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	1 cut(s)	1177
SfaNI	GCATC	3 cut(s)	196, 901, 1046
SfcI	CTRYAG	3 cut(s)	267, 1365, 1382
Sfr274I	CTCGAG	2 cut(s)	569, 599
SlaI	CTCGAG	2 cut(s)	569, 599
SmiI	ATTTAAAT	1 cut(s)	1020
SmiMI	CAYNNNNRTG	3 cut(s)	549, 1100, 1272
SmlI	CTYRAG	5 cut(s)	437, 569, 599, 1031, 1145
SmoI	CTYRAG	5 cut(s)	437, 569, 599, 1031, 1145
SpeI	ACTAGT	1 cut(s)	982
SphI	GCATGC	1 cut(s)	1095
SsiI	CCGC	4 cut(s)	118, 125, 238, 908
SspMI	CTAG	4 cut(s)	159, 455, 468, 983
SstI	GAGCTC	1 cut(s)	1177
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	1 cut(s)	248
SwaI	ATTTAAAT	1 cut(s)	1020
TaaI	ACNGT	4 cut(s)	183, 590, 802, 1366
TaiI	ACGT	2 cut(s)	726, 780
TaqI	TCGA	7 cut(s)	297, 429, 570, 600, 659, 1171, 1302
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	3 cut(s)	307, 403, 880
Tru1I	TTAA	6 cut(s)	35, 393, 636, 641, 1019, 1208
Tru9I	TTAA	6 cut(s)	35, 393, 636, 641, 1019, 1208
TscAI	CASTG	2 cut(s)	85, 154
TseFI	GTSAC	2 cut(s)	553, 613
TseI	GCWGC	3 cut(s)	889, 1072, 1121
Tsp45I	GTSAC	2 cut(s)	553, 613
TspDTI	ATGAA	6 cut(s)	206, 411, 645, 726, 1001, 1320
TspGWI	ACGGA	1 cut(s)	1270
TspRI	CASTG	2 cut(s)	85, 154
Tth111I	GACNNNGTC	1 cut(s)	74
VspI	ATTAAT	2 cut(s)	35, 393
XapI	RAATTY	2 cut(s)	347, 1370
XceI	RCATGY	2 cut(s)	548, 1095
XhoI	CTCGAG	2 cut(s)	569, 599
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	4 cut(s)	159, 455, 468, 983
ZrmI	AGTACT	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.