FvH4_1g15890

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
9040927 .. 9043906
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15890.t2

Sequence Viewer

Length: 900 bp
ATGGTTGAATCAGATATCAAGGACTTTGGCAGCATGGTGGACAGAACCAGTGGATTGCCGGATGAAATTCTTGTGAGCATACTGTCTCTATTGTCCCTAAAGGAAGCACAAGCTACTAGTATCCTTTCTAGGAGGTGGCAGTATGTGTGGGCTTATTGTATTACTCTCAACTTTGCTGAGAAGATATTAGTCAGATTTAGGGAGTTGGACAGAGAAGCACGCGAGTTGGAAAGGTGTAGGTATGTCAATTGGGTGGACAGTGTGTTGAAGCAACACAGAGCTGTAAACATTGAGCTATTTAGGGTTGCTTTTAACCGTGGTCCTAGAAGTAGTATTGATGAATGGATTCAACTAGCAATGAGGAAAGGAGTTCAAATGCTTGAGTTGGACTTCTCTGCACATGCTCCTCTGTTGGATGAAAAATACAGATTTAGTGGCAAACTGTTTGGTATCGGCGAAACCTCTGGTTTGGAGTCCTCCTGTTCTGAATACATTGGTTTTAAGTGCCTCAAAGTTCTTGATTTGAAATCAGTTGAAGTAGACCAAGTAGTTCCTGAGTACTTCATTTCTAACTGTCCAGTTCTCGAAAGACTAGCCGTATATAAATCATACTCACTGGTTAATCTTAGAGTTGTTGGTCAATCGATTGCATTGAAGTACTTAGTGATACAAAAATGTTTCGGTATTGAAAGCATTGAGATATCTGATGCAAACCTAGTCTCTTTTATCTATGAAGGAGGTCTGGAAAACTTGCTTCTTAGGAATCTACCACTTCTTGTTGAGATATCACTTTTGGAAGGGTTGATATGTTATGACTTAAAGATTGCCTCCCGGTCCCTTTCGTGCTGTCTCTCTCAGCTTGAGATTCTCAAACTCAATGGTGCGAAAGGGATCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

300

Amino Acids

33.97

Weight (kDa)

5.68

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 51 3.5e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 88 - 293 2.7e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 112 - 239 9.5e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 222
AclWI GGATC 2 cut(s) 886, 899
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 2 cut(s) 560, 659
AgsI TTSAA 8 cut(s) 8, 268, 350, 374, 526, 536, 655, 689
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 4 cut(s) 113, 281, 295, 859
AluI AGCT 4 cut(s) 113, 281, 295, 859
Alw26I GTCTC 3 cut(s) 90, 724, 854
AlwI GGATC 2 cut(s) 886, 899
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 345
AspS9I GGNCC 2 cut(s) 320, 834
AsuC2I CCSGG 1 cut(s) 832
AvaII GGWCC 2 cut(s) 320, 834
BamHI GGATCC 1 cut(s) 891
BbvI GCAGC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 581
BciVI GTATCC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 90, 724, 854
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 6 cut(s) 117, 129, 324, 353, 593, 716
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 2 cut(s) 560, 659
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 2 cut(s) 320, 834
BmgT120I GGNCC 2 cut(s) 320, 834
BmiI GGNNCC 2 cut(s) 836, 893
BmrFI CCNGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 697
BpuEI CTTGAG 2 cut(s) 401, 881
BpuMI CCSGG 1 cut(s) 832
Bsa29I ATCGAT 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 48, 578, 621
Bse3DI GCAATG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 67, 421
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 3 cut(s) 168, 546, 869
BseNI ACTGG 3 cut(s) 48, 578, 621
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 644
BsiSI CCGG 2 cut(s) 59, 832
BslFI GGGAC 2 cut(s) 79, 820
BsmAI GTCTC 3 cut(s) 90, 724, 854
BsmFI GGGAC 2 cut(s) 79, 820
Bsp143I GATC 1 cut(s) 891
BspCNI CTCAG 3 cut(s) 169, 547, 868
BspDI ATCGAT 1 cut(s) 644
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 836, 893
BspPI GGATC 2 cut(s) 886, 899
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 3 cut(s) 48, 578, 621
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 891
Bst4CI ACNGT 5 cut(s) 84, 260, 317, 444, 575
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 6 cut(s) 177, 555, 626, 661, 758, 855
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 67, 421
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 1 cut(s) 894
BstMAI GTCTC 3 cut(s) 90, 724, 854
BstMBI GATC 1 cut(s) 891
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 830
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 891
BstYI RGATCY 1 cut(s) 891
Bsu15I ATCGAT 1 cut(s) 644
BsuI GTATCC 1 cut(s) 131
BsuTUI ATCGAT 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 67, 421
BtsIMutI CAGTG 3 cut(s) 55, 265, 614
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 320, 834
ClaI ATCGAT 1 cut(s) 644
Csp6I GTAC 2 cut(s) 559, 658
CviAII CATG 2 cut(s) 34, 401
CviJI RGCY 6 cut(s) 113, 152, 281, 295, 596, 859
CviKI_1 RGCY 6 cut(s) 113, 152, 281, 295, 596, 859
CviQI GTAC 2 cut(s) 559, 658
DdeI CTNAG 6 cut(s) 177, 555, 626, 661, 758, 855
DpnI GATC 1 cut(s) 893
DpnII GATC 1 cut(s) 891
Eco32I GATATC 3 cut(s) 16, 702, 786
Eco47I GGWCC 2 cut(s) 320, 834
EcoRV GATATC 3 cut(s) 16, 702, 786
FaeI CATG 2 cut(s) 37, 404
FaqI GGGAC 2 cut(s) 79, 820
FatI CATG 2 cut(s) 33, 400
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 74, 428
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 6 cut(s) 117, 129, 324, 353, 593, 716
GluI GCNGC 1 cut(s) 31
HapII CCGG 2 cut(s) 59, 832
Hin1II CATG 2 cut(s) 37, 404
HinfI GANTC 5 cut(s) 8, 346, 473, 763, 865
HpaII CCGG 2 cut(s) 59, 832
Hpy166II GTNNAC 4 cut(s) 40, 256, 286, 541
Hpy188I TCNGA 4 cut(s) 13, 194, 487, 706
Hpy188III TCNNGA 4 cut(s) 518, 554, 584, 743
Hpy8I GTNNAC 4 cut(s) 40, 256, 286, 541
HpyAV CCTTC 2 cut(s) 728, 791
HpyCH4III ACNGT 5 cut(s) 84, 260, 317, 444, 575
HpyCH4V TGCA 3 cut(s) 398, 650, 710
HpyF3I CTNAG 6 cut(s) 177, 555, 626, 661, 758, 855
Hsp92II CATG 2 cut(s) 37, 404
Kzo9I GATC 1 cut(s) 891
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 61, 72, 450, 493, 567, 591, 602, 728, 845
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 697
MaeI CTAG 6 cut(s) 117, 129, 324, 353, 593, 716
MalI GATC 1 cut(s) 893
MboI GATC 1 cut(s) 891
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 891
MluCI AATT 2 cut(s) 66, 247
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 4 cut(s) 186, 207, 366, 393
MnlI CCTC 8 cut(s) 126, 354, 417, 472, 487, 518, 731, 838
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 4 cut(s) 312, 501, 621, 818
MspI CCGG 2 cut(s) 59, 832
MspR9I CCNGG 1 cut(s) 832
MunI CAATTG 1 cut(s) 247
MvnI CGCG 1 cut(s) 222
NciI CCSGG 1 cut(s) 832
NdeII GATC 1 cut(s) 891
NlaIII CATG 2 cut(s) 37, 404
NlaIV GGNNCC 2 cut(s) 836, 893
NspI RCATGY 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 4 cut(s) 8, 346, 763, 865
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 836, 893
PspPI GGNCC 2 cut(s) 320, 834
PsuI RGATCY 1 cut(s) 891
RsaI GTAC 2 cut(s) 560, 659
RsaNI GTAC 2 cut(s) 559, 658
SaqAI TTAA 4 cut(s) 312, 501, 621, 818
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 891
Sau96I GGNCC 2 cut(s) 320, 834
ScaI AGTACT 2 cut(s) 560, 659
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 832
SfaNI GCATC 1 cut(s) 697
SinI GGWCC 2 cut(s) 320, 834
SmlI CTYRAG 2 cut(s) 380, 860
SmoI CTYRAG 2 cut(s) 380, 860
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 2 cut(s) 66, 247
SspMI CTAG 6 cut(s) 117, 129, 324, 353, 593, 716
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 5 cut(s) 84, 260, 317, 444, 575
TaqI TCGA 2 cut(s) 585, 644
TasI AATT 2 cut(s) 66, 247
TatI WGTACW 2 cut(s) 558, 657
TfiI GAWTC 4 cut(s) 8, 346, 763, 865
Tru1I TTAA 4 cut(s) 312, 501, 621, 818
Tru9I TTAA 4 cut(s) 312, 501, 621, 818
TscAI CASTG 3 cut(s) 55, 265, 621
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 5 cut(s) 78, 354, 432, 553, 747
TspRI CASTG 3 cut(s) 55, 265, 621
VpaK11BI GGWCC 2 cut(s) 320, 834
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 6 cut(s) 117, 129, 324, 353, 593, 716
ZrmI AGTACT 2 cut(s) 560, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.