Prupe.4G126500_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000095
Physical Location & Seq
Forward (+)
6945900 .. 6948339
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G126500.2

Sequence Viewer

Length: 762 bp
ATGTCTCGCGGGACCAGACGAGCTCATATGAGTGAGATGGAAGAACCTTTCTCCCAGAACAATTTGAGAAAGAAAAGAGTTCGCCCAACCTTTCAATTTGTCCAAATTAAGGAAGCAGCGTGCACTAGCATCCTCTCTAGGCGATGGCAGTATCTATGGGCCTCTACTATGACTCTCAACTTTGATGCTGTTAACTTTGAAGTTGGTAATACTTCTAGTCGCTTCGGGGAGCTCAAACGAGAGTCGAGAGACCAGCAGAGCTTTAGATACATTGGCCAAAACATCGAAAGATTCAGGGCCCACTTTTTTCTAGATTGCCGCTTTAAAAGTTCAGTTGATAAATGGATTCAATTTGGAATGGAAAGGAGAGTTCAGATACTTGAGTTGGAATTTCTTGCCGAAAAATCTTTTAGGGACGAAGATTACACATTTCCCCAAAAACTGTTGGGCATCATCAGTACAAAAAAAGGCTCTGCTTTGGAGCAGTTCTTGTATTCTGCCTGGGACAACTTGTTGCAGTCAGACATTCCAAGTCTATACTCTTGTGGATACAGTATTGGGTTCAAGTCCCTCAAAGTTCTTCGTTTGCGGCATGTTCGCGCGACAGAAGAATTTATCGAGTACCTCTTGCCCAATTCTCCAGTTCTTGAAAGATTATCATTGAATGCTGCCAGAGGTCTGGTTAATTTAAGAGATATCGAAATGTACCTTCACTTGTCGAGGTATCAATTTTTAAGGAGCGCTGTCGTATTGATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

254

Amino Acids

29.88

Weight (kDa)

9.65

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 9, 600, 602
AciI CCGC 3 cut(s) 9, 319, 589
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 389, 611
AfaI GTAC 3 cut(s) 460, 623, 707
AfeI AGCGCT 1 cut(s) 742
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 6 cut(s) 95, 200, 350, 565, 650, 664
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 3 cut(s) 23, 232, 261
AluI AGCT 3 cut(s) 23, 232, 261
Alw21I GWGCWC 3 cut(s) 25, 125, 234
Alw26I GTCTC 2 cut(s) 9, 243
Alw44I GTGCAC 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 742
AoxI GGCC 3 cut(s) 159, 274, 297
ApaI GGGCCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 116, 668
ApoI RAATTY 2 cut(s) 389, 611
AspLEI GCGC 2 cut(s) 602, 743
AspS9I GGNCC 4 cut(s) 12, 159, 297, 298
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 2 cut(s) 125, 301
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 3 cut(s) 25, 234, 301
Bbv12I GWGCWC 3 cut(s) 25, 125, 234
BbvI GCAGC 2 cut(s) 128, 655
BccI CCATC 2 cut(s) 31, 138
BciT130I CCWGG 1 cut(s) 502
BciVI GTATCC 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 9, 243
BfaI CTAG 4 cut(s) 126, 138, 216, 311
BfoI RGCGCY 1 cut(s) 744
BfuI GTATCC 1 cut(s) 542
BisI GCNGC 4 cut(s) 117, 319, 590, 669
BlsI GCNGC 4 cut(s) 118, 320, 591, 670
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 4 cut(s) 12, 159, 297, 298
BmiI GGNNCC 2 cut(s) 13, 299
BmrFI CCNGG 1 cut(s) 502
BmsI GCATC 3 cut(s) 138, 175, 459
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 501
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 641
BseSI GKGCMC 2 cut(s) 125, 301
BseXI GCAGC 2 cut(s) 128, 655
Bsh1236I CGCG 3 cut(s) 9, 600, 602
BshFI GGCC 3 cut(s) 161, 276, 299
BsiHKAI GWGCWC 3 cut(s) 25, 125, 234
BslFI GGGAC 4 cut(s) 25, 428, 518, 553
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 9, 243
BsmFI GGGAC 4 cut(s) 25, 428, 518, 553
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 3 cut(s) 161, 276, 299
Bso31I GGTCTC 1 cut(s) 243
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 4 cut(s) 25, 125, 234, 301
BspACI CCGC 3 cut(s) 9, 319, 589
BspANI GGCC 3 cut(s) 161, 276, 299
BspFNI CGCG 3 cut(s) 9, 600, 602
BspLI GGNNCC 2 cut(s) 13, 299
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 444, 554
BstC8I GCNNGC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 3 cut(s) 9, 600, 602
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 2 cut(s) 602, 743
BstMAI GTCTC 2 cut(s) 9, 243
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 500
BstSLI GKGCMC 2 cut(s) 125, 301
BstUI CGCG 3 cut(s) 9, 600, 602
BstV1I GCAGC 2 cut(s) 128, 655
BstXI CCANNNNNNTGG 1 cut(s) 679
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 3 cut(s) 161, 276, 299
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 2 cut(s) 602, 743
Cfr13I GGNCC 4 cut(s) 12, 159, 297, 298
Csp6I GTAC 3 cut(s) 459, 622, 706
CviAII CATG 1 cut(s) 593
CviJI RGCY 7 cut(s) 23, 161, 232, 261, 276, 299, 471
CviKI_1 RGCY 7 cut(s) 23, 161, 232, 261, 276, 299, 471
CviQI GTAC 3 cut(s) 459, 622, 706
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 274
Ecl136II GAGCTC 2 cut(s) 23, 232
Eco24I GRGCYC 3 cut(s) 25, 234, 301
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 12
Eco47III AGCGCT 1 cut(s) 742
Eco53kI GAGCTC 2 cut(s) 23, 232
EcoICRI GAGCTC 2 cut(s) 23, 232
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 697
EcoT38I GRGCYC 3 cut(s) 25, 234, 301
FaeI CATG 1 cut(s) 596
FaiI YATR 7 cut(s) 27, 29, 157, 170, 538, 594, 760
FaqI GGGAC 4 cut(s) 25, 428, 518, 553
FatI CATG 1 cut(s) 592
FauI CCCGC 1 cut(s) 2
FauNDI CATATG 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 117, 319, 590, 669
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 3 cut(s) 25, 234, 301
Fsp4HI GCNGC 4 cut(s) 117, 319, 590, 669
FspBI CTAG 4 cut(s) 126, 138, 216, 311
GlaI GCGC 2 cut(s) 601, 742
GluI GCNGC 4 cut(s) 117, 319, 590, 669
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 3 cut(s) 161, 276, 299
HhaI GCGC 2 cut(s) 602, 743
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 2 cut(s) 600, 741
HinP1I GCGC 2 cut(s) 600, 741
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 5 cut(s) 172, 242, 291, 346, 754
HpaI GTTAAC 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 123, 193
Hpy188I TCNGA 2 cut(s) 375, 523
Hpy188III TCNNGA 3 cut(s) 246, 311, 647
Hpy8I GTNNAC 2 cut(s) 123, 193
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 2 cut(s) 444, 554
HpyCH4V TGCA 2 cut(s) 123, 517
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 2 cut(s) 600, 741
KspAI GTTAAC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 229, 481, 738
LpnPI CCDG 9 cut(s) 28, 68, 266, 280, 487, 514, 654, 665, 685
Lsp1109I GCAGC 2 cut(s) 128, 655
LweI GCATC 3 cut(s) 138, 175, 459
MaeI CTAG 4 cut(s) 126, 138, 216, 311
MboII GAAGA 4 cut(s) 53, 431, 572, 620
MhlI GDGCHC 4 cut(s) 25, 125, 234, 301
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 9 cut(s) 61, 95, 105, 350, 389, 611, 634, 685, 728
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 166, 251
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 6 cut(s) 143, 172, 581, 635, 668, 714
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 6 cut(s) 108, 192, 324, 684, 689, 734
MslI CAYNNNNRTG 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 502
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 1 cut(s) 502
MvnI CGCG 3 cut(s) 9, 600, 602
NdeI CATATG 1 cut(s) 27
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 2 cut(s) 13, 299
NspI RCATGY 1 cut(s) 596
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 3 cut(s) 291, 346, 754
PkrI GCNGC 4 cut(s) 118, 320, 591, 670
PleI GAGTC 2 cut(s) 166, 250
PpsI GAGTC 2 cut(s) 166, 250
Psp124BI GAGCTC 2 cut(s) 25, 234
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 13, 299
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 4 cut(s) 12, 159, 297, 298
RsaI GTAC 3 cut(s) 460, 623, 707
RsaNI GTAC 3 cut(s) 459, 622, 706
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 2 cut(s) 25, 234
SaqAI TTAA 6 cut(s) 108, 192, 324, 684, 689, 734
SatI GCNGC 4 cut(s) 117, 319, 590, 669
Sau96I GGNCC 4 cut(s) 12, 159, 297, 298
SchI GAGTC 2 cut(s) 166, 251
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 4 cut(s) 25, 125, 234, 301
SetI ASST 9 cut(s) 25, 49, 92, 234, 263, 627, 679, 711, 725
SfaNI GCATC 3 cut(s) 138, 175, 459
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 9 cut(s) 61, 95, 105, 350, 389, 611, 634, 685, 728
SsiI CCGC 3 cut(s) 9, 319, 589
SspMI CTAG 4 cut(s) 126, 138, 216, 311
SstI GAGCTC 2 cut(s) 25, 234
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 2 cut(s) 444, 554
TaqI TCGA 5 cut(s) 245, 285, 618, 699, 719
TasI AATT 9 cut(s) 61, 95, 105, 350, 389, 611, 634, 685, 728
TatI WGTACW 1 cut(s) 458
TauI GCSGC 2 cut(s) 321, 592
TfiI GAWTC 3 cut(s) 291, 346, 754
Tru1I TTAA 6 cut(s) 108, 192, 324, 684, 689, 734
Tru9I TTAA 6 cut(s) 108, 192, 324, 684, 689, 734
TseI GCWGC 2 cut(s) 116, 668
VneI GTGCAC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 2 cut(s) 389, 611
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 596
XspI CTAG 4 cut(s) 126, 138, 216, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.