Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000095

Physical Location & Seq

Genomic Coordinates Reverse (-)

1297074 .. 1299788

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGAAGAAGAGAAGAGCAACCTTTCAATCTGTGGAGAACGAAGTTGAGAACAAGGGCAAGAGGAGAAGGAAAAGTAGGGTTGAATACAACATGGTGGACAGCGTCAGTGCATTGCCCGATGACATTCTTGTTAGTTTAGTGTCCCGCTTGCCGCTAAAGGAAGCAGTAGCTACCAGTGTCCTTTCTAGGCGATGGCAGAATGTGGGACTGTCTACTATGACCCTTAGGTTTGATGCTGTTGACTTCTCAATTGACAATAATTTACGCCACTACTTTCGCCAACCAAAAGAATTTAAAGAGCAGGAGAGCTGGAATTACATCAATTGGGTGAATCATGTGGTGCAACAGCATAGAGGCGAACATATAGAAGAATTCAGGATTAGCTTCTGTTTAGATAGTCGCTTTTCAAGTTCCATTAATGAATGGATTCAATTTGCAATGGAAAACAGTGTTGAAATGCTTGAATTGGATTTTTATCCAGAAGTTTTTATTAGATTTGAAGATTATACATTTCCCCACAAACTTTTGGGGATCTGCACTCCAAGTCTGGGCTGTTGTGGATACGATATTGGTTTCAAGTCCCTCAAAGTTCTTCAGATCCGACATGTTGGTGTGACTGGAGAAGTTCTCGAGTATTTCTTGGCGAACTGCCCATTACTCGAGAGGTTATCAGTGGATTCCACAGAACATTTGGTTAATTTAAGAGTTGTTGGTTCGTCAATTGCGTTGAAGTATTTGGTGATACAAGATTGTGATAACCTGGAAAGCATTGAAATCAGAGACGTAAACATCGTTTCATTTATTTATTGTGGATATCATTCAACAAACCTGCTTATCAGTAACGTACCATTGCTTTCTGAGGTAACCGTTTCTAAGGAGTATTGTCAAAAGGATTTTGTAAGGGTTGTCTTCACCCAACTTTCCTGCTGTCTTTCCAACATAGTGATTCTGAAGCTGCATATCCAGGGAGCGGCCTACAATGAGCATCCTGCATTGCCTTTATTAGCCAATCTGAAGCATTTGGAATTACTAGTTGCAGCAAATTATTATAGGGCACTTCATCATTTAAATAACTTCCTGAAGGCATCTCCTTACTTGCAGAGACTCGTATTGAAGTTGCAGCTGTATCTGGGGGGTCCAGCACGCATGGAACTTGGAGAAATTGAGAAAGCAGCTGATTGCCCCCATAATCACCTCAAGGTAGTAGAAATAGTTGGCTATCGAGCTCATACATCTGGTGTTGAACATGTCATGCACTTAATAAAGAATGTCCTTGCACTGGAGAAAATTGTGATTGATCCTGTACGGACATGGCAATATCCTCATGGAGTTGATAGGCCAGATACAGACCTCGATAAAGAAGTCAAGGCTAGAGACCATGCTAAGCAATACCTTGAACCAAAAATCCCTTCAACTGTAGAATTTGTGTGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016874 GO:0016879 GO:0016880 GO:0017178 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

Diphthami_syn_2 Ribonuc_L-PSP

Protein Analysis

478

Amino Acids

55.06

Weight (kDa)

6.58

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	113 - 475	1.3e-38	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	175 - 262	1.6e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica	MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica	Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis	pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis	RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata	RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora	Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii	Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa	Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha	Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana	Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AccBSI	CCGCTC	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	3 cut(s)	145, 152, 971
AclWI	GGATC	3 cut(s)	539, 592, 1292
AcsI	RAATTY	3 cut(s)	290, 371, 1421
AcuI	CTGAAG	4 cut(s)	578, 971, 1034, 1100
AfaI	GTAC	2 cut(s)	846, 1305
AfiI	CCNNNNNNNGG	3 cut(s)	548, 970, 1279
AflIII	ACRYGT	2 cut(s)	604, 1246
AhlI	ACTAGT	1 cut(s)	1030
AjnI	CCWGG	2 cut(s)	759, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	1393, 1425
AloI	GAACNNNNNNTCC	2 cut(s)	1389, 1421
AluBI	AGCT	7 cut(s)	170, 309, 384, 955, 1123, 1175, 1226
AluI	AGCT	7 cut(s)	170, 309, 384, 955, 1123, 1175, 1226
Alw21I	GWGCWC	1 cut(s)	1228
Alw26I	GTCTC	3 cut(s)	774, 1096, 1368
AlwI	GGATC	3 cut(s)	539, 592, 1292
Ama87I	CYCGRG	2 cut(s)	629, 659
AoxI	GGCC	2 cut(s)	972, 1337
ApeKI	GCWGC	4 cut(s)	955, 1037, 1120, 1172
ApoI	RAATTY	3 cut(s)	290, 371, 1421
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	1136
AsuHPI	GGTGA	4 cut(s)	340, 751, 904, 1184
AvaI	CYCGRG	2 cut(s)	629, 659
AvaII	GGWCC	1 cut(s)	1136
AxyI	CCTNAGG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	1057
BanII	GRGCYC	1 cut(s)	1228
BbsI	GAAGAC	1 cut(s)	901
Bbv12I	GWGCWC	1 cut(s)	1228
BbvI	GCAGC	4 cut(s)	942, 1049, 1132, 1184
BccI	CCATC	1 cut(s)	186
BciT130I	CCWGG	2 cut(s)	761, 965
BciVI	GTATCC	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	774, 1096, 1368
BcuI	ACTAGT	1 cut(s)	1030
BfaI	CTAG	3 cut(s)	186, 1031, 1371
BfmI	CTRYAG	2 cut(s)	1416, 1433
BfuAI	ACCTGC	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	6 cut(s)	152, 956, 972, 1038, 1121, 1173
BlpI	GCTNAGC	1 cut(s)	1383
BlsI	GCNGC	6 cut(s)	153, 957, 973, 1039, 1122, 1174
Bme1390I	CCNGG	2 cut(s)	761, 965
Bme18I	GGWCC	1 cut(s)	1136
BmeT110I	CYCGRG	2 cut(s)	629, 659
BmgT120I	GGNCC	1 cut(s)	1136
BmiI	GGNNCC	1 cut(s)	1137
BmrFI	CCNGG	2 cut(s)	761, 965
BmsI	GCATC	3 cut(s)	223, 994, 1094
BpiI	GAAGAC	1 cut(s)	901
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
BpmI	CTGGAG	2 cut(s)	639, 1301
Bpu1102I	GCTNAGC	1 cut(s)	1383
BpuEI	CTTGAG	1 cut(s)	1181
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	1368
BsaJI	CCNNGG	1 cut(s)	964
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 970, 1279
Bse1I	ACTGG	3 cut(s)	174, 622, 1284
Bse21I	CCTNAGG	1 cut(s)	224
Bse3DI	GCAATG	4 cut(s)	110, 444, 848, 992
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	761, 965
BseDI	CCNNGG	1 cut(s)	964
BseGI	GGATG	1 cut(s)	985
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	548, 970, 1279
BseMI	GCAATG	4 cut(s)	110, 444, 848, 992
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	3 cut(s)	174, 622, 1284
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	4 cut(s)	942, 1049, 1132, 1184
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	974, 1339
BsiHKAI	GWGCWC	1 cut(s)	1228
BsiHKCI	CYCGRG	2 cut(s)	629, 659
BslFI	GGGAC	3 cut(s)	127, 219, 565
BslI	CCNNNNNNNGG	3 cut(s)	548, 970, 1279
BsmAI	GTCTC	3 cut(s)	774, 1096, 1368
BsmBI	CGTCTC	1 cut(s)	774
BsmFI	GGGAC	3 cut(s)	127, 219, 565
BsnI	GGCC	2 cut(s)	974, 1339
Bso31I	GGTCTC	1 cut(s)	1368
BsoBI	CYCGRG	2 cut(s)	629, 659
Bsp1286I	GDGCHC	2 cut(s)	1057, 1228
Bsp143I	GATC	3 cut(s)	531, 597, 1297
Bsp1720I	GCTNAGC	1 cut(s)	1383
BspACI	CCGC	3 cut(s)	145, 152, 971
BspANI	GGCC	2 cut(s)	974, 1339
BspCNI	CTCAG	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	1137
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	3 cut(s)	539, 592, 1292
BspQI	GCTCTTC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	1368
BsrBI	CCGCTC	1 cut(s)	971
BsrDI	GCAATG	4 cut(s)	110, 444, 848, 992
BsrI	ACTGG	3 cut(s)	174, 622, 1284
BssECI	CCNNGG	1 cut(s)	964
BssMI	GATC	3 cut(s)	531, 597, 1297
Bst2UI	CCWGG	2 cut(s)	761, 965
Bst4CI	ACNGT	4 cut(s)	210, 449, 868, 1417
Bst6I	CTCTTC	2 cut(s)	2, 7
BstC8I	GCNNGC	2 cut(s)	149, 1144
BstDEI	CTNAG	4 cut(s)	224, 858, 873, 1383
BstEII	GGTNACC	1 cut(s)	862
BstF5I	GGATG	1 cut(s)	985
BstKTI	GATC	3 cut(s)	534, 600, 1300
BstMAI	GTCTC	3 cut(s)	774, 1096, 1368
BstMBI	GATC	3 cut(s)	531, 597, 1297
BstNI	CCWGG	2 cut(s)	761, 965
BstNSI	RCATGY	2 cut(s)	608, 1250
BstPI	GGTNACC	1 cut(s)	862
BstSCI	CCNGG	2 cut(s)	759, 963
BstSFI	CTRYAG	2 cut(s)	1416, 1433
BstSLI	GKGCMC	1 cut(s)	1057
BstV1I	GCAGC	4 cut(s)	942, 1049, 1132, 1184
BstV2I	GAAGAC	1 cut(s)	901
BstX2I	RGATCY	2 cut(s)	531, 597
BstYI	RGATCY	2 cut(s)	531, 597
Bsu36I	CCTNAGG	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	974, 1339
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	985
BtsIMutI	CAGTG	5 cut(s)	112, 181, 454, 678, 1277
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	149, 1144
Cfr13I	GGNCC	1 cut(s)	1136
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	845, 1304
CviAII	CATG	9 cut(s)	91, 335, 605, 1147, 1247, 1252, 1311, 1325, 1379
CviQI	GTAC	2 cut(s)	845, 1304
DdeI	CTNAG	4 cut(s)	224, 858, 873, 1383
DpnI	GATC	3 cut(s)	533, 599, 1299
DpnII	GATC	3 cut(s)	531, 597, 1297
DraI	TTTAAA	2 cut(s)	295, 1068
Eam1104I	CTCTTC	2 cut(s)	2, 7
EarI	CTCTTC	2 cut(s)	2, 7
Ecl136II	GAGCTC	1 cut(s)	1226
Eco24I	GRGCYC	1 cut(s)	1228
Eco31I	GGTCTC	1 cut(s)	1368
Eco32I	GATATC	1 cut(s)	815
Eco47I	GGWCC	1 cut(s)	1136
Eco53kI	GAGCTC	1 cut(s)	1226
Eco57I	CTGAAG	4 cut(s)	578, 971, 1034, 1100
Eco81I	CCTNAGG	1 cut(s)	224
Eco88I	CYCGRG	2 cut(s)	629, 659
Eco91I	GGTNACC	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	1226
EcoO65I	GGTNACC	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	759, 963
EcoRV	GATATC	1 cut(s)	815
EcoT38I	GRGCYC	1 cut(s)	1228
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	9 cut(s)	94, 338, 608, 1150, 1250, 1255, 1314, 1328, 1382
FaqI	GGGAC	3 cut(s)	127, 219, 565
FatI	CATG	9 cut(s)	90, 334, 604, 1146, 1246, 1251, 1310, 1324, 1378
FauI	CCCGC	1 cut(s)	152
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	6 cut(s)	152, 956, 972, 1038, 1121, 1173
FokI	GGATG	1 cut(s)	972
FriOI	GRGCYC	1 cut(s)	1228
Fsp4HI	GCNGC	6 cut(s)	152, 956, 972, 1038, 1121, 1173
FspBI	CTAG	3 cut(s)	186, 1031, 1371
GluI	GCNGC	6 cut(s)	152, 956, 972, 1038, 1121, 1173
GsuI	CTGGAG	2 cut(s)	639, 1301
HaeIII	GGCC	2 cut(s)	974, 1339
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	9 cut(s)	94, 338, 608, 1150, 1250, 1255, 1314, 1328, 1382
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	5 cut(s)	331, 427, 677, 946, 1104
HphI	GGTGA	4 cut(s)	340, 751, 904, 1184
Hpy166II	GTNNAC	4 cut(s)	97, 213, 241, 787
Hpy188I	TCNGA	6 cut(s)	597, 602, 779, 859, 951, 1014
Hpy188III	TCNNGA	5 cut(s)	376, 479, 629, 661, 1078
Hpy8I	GTNNAC	4 cut(s)	97, 213, 241, 787
HpyAV	CCTTC	3 cut(s)	60, 1075, 1419
HpyCH4III	ACNGT	4 cut(s)	210, 449, 868, 1417
HpyCH4IV	ACGT	2 cut(s)	783, 843
HpyF3I	CTNAG	4 cut(s)	224, 858, 873, 1383
HpySE526I	ACGT	2 cut(s)	783, 843
Hsp92II	CATG	9 cut(s)	94, 338, 608, 1150, 1250, 1255, 1314, 1328, 1382
Kzo9I	GATC	3 cut(s)	531, 597, 1297
LguI	GCTCTTC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	968
Lsp1109I	GCAGC	4 cut(s)	942, 1049, 1132, 1184
LweI	GCATC	3 cut(s)	223, 994, 1094
MaeI	CTAG	3 cut(s)	186, 1031, 1371
MaeII	ACGT	2 cut(s)	783, 843
MaeIII	GTNAC	3 cut(s)	613, 839, 862
MalI	GATC	3 cut(s)	533, 599, 1299
MbiI	CCGCTC	1 cut(s)	971
MboI	GATC	3 cut(s)	531, 597, 1297
MboII	GAAGA	7 cut(s)	16, 19, 24, 380, 512, 584, 901
MfeI	CAATTG	3 cut(s)	249, 322, 720
MflI	RGATCY	2 cut(s)	531, 597
MhlI	GDGCHC	2 cut(s)	1057, 1228
MlyI	GAGTC	1 cut(s)	1098
MmeI	TCCRAC	2 cut(s)	625, 960
MnlI	CCTC	8 cut(s)	54, 347, 593, 657, 853, 1205, 1332, 1361
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	6 cut(s)	294, 417, 696, 701, 1067, 1259
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	1123, 1175
MspR9I	CCNGG	2 cut(s)	761, 965
MunI	CAATTG	3 cut(s)	249, 322, 720
MvaI	CCWGG	2 cut(s)	761, 965
NdeII	GATC	3 cut(s)	531, 597, 1297
NlaIII	CATG	9 cut(s)	94, 338, 608, 1150, 1250, 1255, 1314, 1328, 1382
NlaIV	GGNNCC	1 cut(s)	1137
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	2 cut(s)	608, 1250
PaeR7I	CTCGAG	2 cut(s)	629, 659
PciI	ACATGT	2 cut(s)	604, 1246
PciSI	GCTCTTC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	2 cut(s)	722, 789
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	331, 427, 677, 946
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	153, 957, 973, 1039, 1122, 1174
PleI	GAGTC	1 cut(s)	1098
PpsI	GAGTC	1 cut(s)	1098
PscI	ACATGT	2 cut(s)	604, 1246
PshBI	ATTAAT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	1228
Psp6I	CCWGG	2 cut(s)	759, 963
PspEI	GGTNACC	1 cut(s)	862
PspGI	CCWGG	2 cut(s)	759, 963
PspN4I	GGNNCC	1 cut(s)	1137
PspPI	GGNCC	1 cut(s)	1136
PsuI	RGATCY	2 cut(s)	531, 597
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	1123, 1175
RsaI	GTAC	2 cut(s)	846, 1305
RsaNI	GTAC	2 cut(s)	845, 1304
RseI	CAYNNNNRTG	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	1228
SapI	GCTCTTC	1 cut(s)	7
SaqAI	TTAA	6 cut(s)	294, 417, 696, 701, 1067, 1259
SatI	GCNGC	6 cut(s)	152, 956, 972, 1038, 1121, 1173
Sau3AI	GATC	3 cut(s)	531, 597, 1297
Sau96I	GGNCC	1 cut(s)	1136
SchI	GAGTC	1 cut(s)	1098
ScrFI	CCNGG	2 cut(s)	761, 965
SduI	GDGCHC	2 cut(s)	1057, 1228
SfaNI	GCATC	3 cut(s)	223, 994, 1094
SfcI	CTRYAG	2 cut(s)	1416, 1433
Sfr274I	CTCGAG	2 cut(s)	629, 659
SinI	GGWCC	1 cut(s)	1136
SlaI	CTCGAG	2 cut(s)	629, 659
SmiI	ATTTAAAT	1 cut(s)	1068
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	3 cut(s)	629, 659, 1196
SmoI	CTYRAG	3 cut(s)	629, 659, 1196
SpeI	ACTAGT	1 cut(s)	1030
SsiI	CCGC	3 cut(s)	145, 152, 971
SspMI	CTAG	3 cut(s)	186, 1031, 1371
SstI	GAGCTC	1 cut(s)	1228
StyD4I	CCNGG	2 cut(s)	759, 963
SwaI	ATTTAAAT	1 cut(s)	1068
TaaI	ACNGT	4 cut(s)	210, 449, 868, 1417
TaiI	ACGT	2 cut(s)	786, 846
TaqI	TCGA	4 cut(s)	630, 660, 1222, 1353
TauI	GCSGC	2 cut(s)	154, 974
TfiI	GAWTC	4 cut(s)	331, 427, 677, 946
Tru1I	TTAA	6 cut(s)	294, 417, 696, 701, 1067, 1259
Tru9I	TTAA	6 cut(s)	294, 417, 696, 701, 1067, 1259
TscAI	CASTG	5 cut(s)	112, 181, 454, 678, 1284
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	4 cut(s)	955, 1037, 1120, 1172
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	17, 435, 786, 1049
TspGWI	ACGGA	1 cut(s)	1321
TspRI	CASTG	5 cut(s)	112, 181, 454, 678, 1284
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	1136
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	3 cut(s)	290, 371, 1421
XceI	RCATGY	2 cut(s)	608, 1250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XhoI	CTCGAG	2 cut(s)	629, 659
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	186, 1031, 1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.