pycom02g01440

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000095
Physical Location & Seq
Forward (+)
873193 .. 874113
921 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01440.2

Sequence Viewer

Length: 657 bp
ATGCTGGTTGAGGTATCCATTTCTAAGTTTGGCGTTCTTGCTGAATTTTTAAGGGGTGTCTTCAGGCGACTCTCATGCCAACTGTTTCATATAGAGATTCCGAAGCTGGATATCAGAGGAGCGGTTTACCATCAGAATTATAAATTTCCAGTGCTATCAAATCTGAAGCATTTGGAATTATTAGTTGATGCCGACTATTGTTTGTCCCTCGTTCACTTGGCTTCTTTCATGAACGCAGCTCCTAACTTGCAGAAACTTGTTTTGGGGTATGAATATTGGGGAGCAAAAGTTAAGGCTTTGAGTTTTGTCAAACTGTTTTCCTTGATGCAGTTGGGTTTTGGATCCAATGCGGAGATGGCAAAAATAGAGAAAGCTGCCCTGATCCCCCATCACAACCTCAAGATAGTAGAAATGACGGGGTATTGTGGTCATAAATGTCGTGTTAAGCATGTCAAGTACTTGATGAAAAACAATGTTGCACTGGAGAAGATCGTTATTAATCATGTCCGGTTTTGGTGTTGGCCTACGGGAATCGAGAGCAATGCCCTACGGGAGAATGAGGAAGAGAATGTGAGAGATAATGCTATTCAATATCTCAAGGAAAAAGTGCCTTCTACCGTAGAATTGTATGCCTGTAATAGTAACTATTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

219

Amino Acids

25.07

Weight (kDa)

8.93

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 122, 350
AclWI GGATC 3 cut(s) 336, 349, 376
AcsI RAATTY 2 cut(s) 44, 143
AcuI CTGAAG 2 cut(s) 46, 185
AfaI GTAC 2 cut(s) 458, 653
AgsI TTSAA 1 cut(s) 590
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 3 cut(s) 106, 239, 374
AluI AGCT 3 cut(s) 106, 239, 374
AlwI GGATC 3 cut(s) 336, 349, 376
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 236, 374
ApoI RAATTY 2 cut(s) 44, 143
AseI ATTAAT 1 cut(s) 498
BamHI GGATCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 248, 361
BccI CCATC 3 cut(s) 138, 349, 396
BcgI CGANNNNNNTGC 4 cut(s) 57, 91, 524, 558
BciVI GTATCC 1 cut(s) 25
BfaI CTAG 1 cut(s) 655
BfuI GTATCC 1 cut(s) 25
BisI GCNGC 2 cut(s) 237, 375
BlsI GCNGC 2 cut(s) 238, 376
BmcAI AGTACT 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 178, 315
BpiI GAAGAC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 383, 581
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bse1I ACTGG 2 cut(s) 149, 486
Bse3DI GCAATG 1 cut(s) 547
BseMI GCAATG 1 cut(s) 547
BseNI ACTGG 2 cut(s) 149, 486
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 248, 361
BshFI GGCC 1 cut(s) 523
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 523
Bsp143I GATC 3 cut(s) 341, 381, 489
BspACI CCGC 2 cut(s) 122, 350
BspANI GGCC 1 cut(s) 523
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 3 cut(s) 336, 349, 376
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 2 cut(s) 149, 486
BssMI GATC 3 cut(s) 341, 381, 489
Bst4CI ACNGT 3 cut(s) 84, 315, 619
Bst6I CTCTTC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 24
BstKTI GATC 3 cut(s) 344, 384, 492
BstMBI GATC 3 cut(s) 341, 381, 489
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 248, 361
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 523
BtsIMutI CAGTG 2 cut(s) 156, 479
CciI TCATGA 1 cut(s) 228
Csp6I GTAC 2 cut(s) 457, 652
CviAII CATG 4 cut(s) 75, 229, 449, 503
CviJI RGCY 6 cut(s) 106, 221, 239, 296, 374, 523
CviKI_1 RGCY 6 cut(s) 106, 221, 239, 296, 374, 523
CviQI GTAC 2 cut(s) 457, 652
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 343, 383, 491
DpnII GATC 3 cut(s) 341, 381, 489
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco32I GATATC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 46, 185
EcoRV GATATC 1 cut(s) 112
FaeI CATG 4 cut(s) 78, 232, 452, 506
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 74, 228, 448, 502
Fnu4HI GCNGC 2 cut(s) 237, 375
Fsp4HI GCNGC 2 cut(s) 237, 375
FspBI CTAG 1 cut(s) 655
GluI GCNGC 2 cut(s) 237, 375
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 1 cut(s) 523
HapII CCGG 1 cut(s) 508
Hin1II CATG 4 cut(s) 78, 232, 452, 506
HinfI GANTC 3 cut(s) 69, 97, 531
HpaII CCGG 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 127, 214
Hpy188I TCNGA 4 cut(s) 102, 116, 135, 165
Hpy188III TCNNGA 3 cut(s) 229, 400, 535
Hpy8I GTNNAC 2 cut(s) 127, 214
HpyAV CCTTC 1 cut(s) 621
HpyCH4III ACNGT 3 cut(s) 84, 315, 619
HpyCH4V TGCA 3 cut(s) 250, 328, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 4 cut(s) 78, 232, 452, 506
Kzo9I GATC 3 cut(s) 341, 381, 489
LmnI GCTCC 3 cut(s) 119, 244, 281
LpnPI CCDG 7 cut(s) 49, 92, 162, 392, 467, 521, 646
Lsp1109I GCAGC 2 cut(s) 248, 361
LweI GCATC 2 cut(s) 178, 315
MaeI CTAG 1 cut(s) 655
MaeIII GTNAC 1 cut(s) 641
MalI GATC 3 cut(s) 343, 383, 491
MbiI CCGCTC 1 cut(s) 122
MboI GATC 3 cut(s) 341, 381, 489
MboII GAAGA 3 cut(s) 52, 499, 575
MflI RGATCY 1 cut(s) 341
MluCI AATT 5 cut(s) 44, 136, 143, 176, 623
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 5 cut(s) 4, 110, 218, 407, 553
MseI TTAA 4 cut(s) 50, 291, 444, 498
MspI CCGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 3 cut(s) 341, 381, 489
NlaIII CATG 4 cut(s) 78, 232, 452, 506
NlaIV GGNNCC 1 cut(s) 343
NspI RCATGY 1 cut(s) 452
PagI TCATGA 1 cut(s) 228
PfeI GAWTC 2 cut(s) 97, 531
PkrI GCNGC 2 cut(s) 238, 376
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 498
PsiI TTATAA 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 341
RsaI GTAC 2 cut(s) 458, 653
RsaNI GTAC 2 cut(s) 457, 652
SaqAI TTAA 4 cut(s) 50, 291, 444, 498
SatI GCNGC 2 cut(s) 237, 375
Sau3AI GATC 3 cut(s) 341, 381, 489
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 1 cut(s) 63
SetI ASST 5 cut(s) 15, 108, 241, 376, 399
SfaNI GCATC 2 cut(s) 178, 315
SmlI CTYRAG 2 cut(s) 398, 596
SmoI CTYRAG 2 cut(s) 398, 596
Sse9I AATT 5 cut(s) 44, 136, 143, 176, 623
SsiI CCGC 2 cut(s) 122, 350
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 84, 315, 619
TaqI TCGA 1 cut(s) 534
TasI AATT 5 cut(s) 44, 136, 143, 176, 623
TatI WGTACW 2 cut(s) 456, 651
TfiI GAWTC 2 cut(s) 97, 531
Tru1I TTAA 4 cut(s) 50, 291, 444, 498
Tru9I TTAA 4 cut(s) 50, 291, 444, 498
TscAI CASTG 2 cut(s) 156, 486
TseI GCWGC 2 cut(s) 236, 374
TspDTI ATGAA 5 cut(s) 77, 217, 245, 285, 479
TspRI CASTG 2 cut(s) 156, 486
VspI ATTAAT 1 cut(s) 498
XapI RAATTY 2 cut(s) 44, 143
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 1 cut(s) 655
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.