Rh5BG185500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000095
Physical Location & Seq
Reverse (-)
20385481 .. 20386635
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG185500.1

Sequence Viewer

Length: 390 bp
ATGAGGAAGAGAAAGAAAAGCAATGATATTGGAAATAACTTGGTGGACAGAATTAGTGTGTTGCCTGATGAAATTTTAGCAAGTATACTCTCTCTATTGCCCCTGAAGGAAGCACAAGCTACTAGTGTTCTTTCTAGGCGATGGCGCCATATGTGGGCGTCTACTGTTACTCTTAACTTTGATAGTGCCCCAACTAGGGGAATTCTAGGGTTCTCAAAGATCGTCGTCATCCAAGGAGAAGGTGGTCAACCCACTGTTCGAGAAGCATCCGAAGCAGATCAGGATTGGAAGGGGATTGCCTCTGAAGAGAGATCCGTCCCGATTCGTCAACCTTGGGCCATTTGTTCAGATCTAACTCGATGCTATCATTTCAAGCATGCAAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

9.39

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 54 2.9e-08 F-box domain
F-box-like PF12937 18 - 51 8.8e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AccI GTMKAC 2 cut(s) 85, 161
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 2 cut(s) 72, 201
AcuI CTGAAG 2 cut(s) 125, 324
AcyI GRCGYC 2 cut(s) 145, 158
AfiI CCNNNNNNNGG 4 cut(s) 154, 195, 196, 197
AgsI TTSAA 1 cut(s) 373
AhlI ACTAGT 1 cut(s) 122
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 336
ApoI RAATTY 2 cut(s) 72, 201
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 144
BccI CCATC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 4 cut(s) 123, 135, 195, 206
BfoI RGCGCY 1 cut(s) 148
BglII AGATCT 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 2 cut(s) 275, 350
BsaHI GRCGYC 2 cut(s) 145, 158
BsaJI CCNNGG 2 cut(s) 232, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 195, 196, 197
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 232, 332
BseGI GGATG 2 cut(s) 228, 266
BseLI CCNNNNNNNGG 4 cut(s) 154, 195, 196, 197
BseMI GCAATG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 190
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 4 cut(s) 154, 195, 196, 197
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 4 cut(s) 219, 277, 311, 349
BspANI GGCC 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 232, 332
BssMI GATC 4 cut(s) 219, 277, 311, 349
BssNAI GTATAC 1 cut(s) 86
BssNI GRCGYC 2 cut(s) 145, 158
BssT1I CCWWGG 2 cut(s) 232, 332
Bst1107I GTATAC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 166, 256
Bst6I CTCTTC 2 cut(s) 2, 300
BstACI GRCGYC 2 cut(s) 145, 158
BstC8I GCNNGC 1 cut(s) 378
BstF5I GGATG 2 cut(s) 228, 266
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 4 cut(s) 222, 280, 314, 352
BstMBI GATC 4 cut(s) 219, 277, 311, 349
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 311, 349
BstYI RGATCY 2 cut(s) 311, 349
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 338
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 228, 266
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 378
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 377
CviJI RGCY 2 cut(s) 119, 338
CviKI_1 RGCY 2 cut(s) 119, 338
DinI GGCGCC 1 cut(s) 146
DpnI GATC 4 cut(s) 221, 279, 313, 351
DpnII GATC 4 cut(s) 219, 277, 311, 349
Eam1104I CTCTTC 2 cut(s) 2, 300
EarI CTCTTC 2 cut(s) 2, 300
Eco130I CCWWGG 2 cut(s) 232, 332
Eco57I CTGAAG 2 cut(s) 125, 324
EcoRI GAATTC 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 232, 332
EgeI GGCGCC 1 cut(s) 146
EheI GGCGCC 1 cut(s) 146
ErhI CCWWGG 2 cut(s) 232, 332
FaeI CATG 1 cut(s) 380
FaiI YATR 4 cut(s) 86, 150, 152, 378
FaqI GGGAC 1 cut(s) 302
FatI CATG 1 cut(s) 376
FauNDI CATATG 1 cut(s) 150
FblI GTMKAC 2 cut(s) 85, 161
FokI GGATG 2 cut(s) 215, 253
FspBI CTAG 4 cut(s) 123, 135, 195, 206
GlaI GCGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 147
Hin1I GRCGYC 2 cut(s) 145, 158
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 2 cut(s) 248, 329
HindII GTYRAC 2 cut(s) 248, 329
HinfI GANTC 1 cut(s) 322
Hpy166II GTNNAC 5 cut(s) 46, 86, 162, 248, 329
Hpy188I TCNGA 3 cut(s) 271, 304, 349
Hpy188III TCNNGA 3 cut(s) 260, 281, 319
Hpy8I GTNNAC 5 cut(s) 46, 86, 162, 248, 329
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 100, 233, 283
HpyCH4III ACNGT 2 cut(s) 166, 256
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
Hsp92I GRCGYC 2 cut(s) 145, 158
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 1 cut(s) 145
KasI GGCGCC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 219, 277, 311, 349
LpnPI CCDG 3 cut(s) 78, 116, 266
LweI GCATC 2 cut(s) 275, 350
MaeI CTAG 4 cut(s) 123, 135, 195, 206
MaeIII GTNAC 1 cut(s) 166
MalI GATC 4 cut(s) 221, 279, 313, 351
MboI GATC 4 cut(s) 219, 277, 311, 349
MboII GAAGA 2 cut(s) 19, 317
MflI RGATCY 2 cut(s) 311, 349
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 51, 72, 201
Mly113I GGCGCC 1 cut(s) 145
MnlI CCTC 1 cut(s) 310
MseI TTAA 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 272
NarI GGCGCC 1 cut(s) 145
NdeI CATATG 1 cut(s) 150
NdeII GATC 4 cut(s) 219, 277, 311, 349
NlaIII CATG 1 cut(s) 380
NlaIV GGNNCC 1 cut(s) 146
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 336
PsuI RGATCY 2 cut(s) 311, 349
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 4 cut(s) 219, 277, 311, 349
Sau96I GGNCC 1 cut(s) 336
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 121, 244, 334
SfaNI GCATC 2 cut(s) 275, 350
SfoI GGCGCC 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 122
SphI GCATGC 1 cut(s) 380
Sse9I AATT 3 cut(s) 51, 72, 201
SspDI GGCGCC 1 cut(s) 144
SspMI CTAG 4 cut(s) 123, 135, 195, 206
StyI CCWWGG 2 cut(s) 232, 332
TaaI ACNGT 2 cut(s) 166, 256
TaqI TCGA 2 cut(s) 259, 358
TasI AATT 3 cut(s) 51, 72, 201
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 1 cut(s) 259
XapI RAATTY 2 cut(s) 72, 201
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 85, 161
XspI CTAG 4 cut(s) 123, 135, 195, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.