Prupe.5G083600_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000095
Physical Location & Seq
Forward (+)
9632319 .. 9634165
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G083600.1

Sequence Viewer

Length: 993 bp
ATGGAAGCAGTGGCTACTAGTGTTCTCTCAAAGCACTTGCGGTATGCGTGGGCATGGTCTACTCTGACACTTGATTTTGATCCCGAGGAAACTTTGATCGACTTCATATACCACAGTCGAACATTGCAAAACAAGAAAAGCCATAGGTATGTCAATTGGGTCAATCGTGTAGTGGAACAACATTCTGGCCCTAACATCAAACTATTTAGGGCTTGCTTCGATCTAGATCGCCGCTTTACAAGTTCCATCGATAAATGGATTGAATTTGCATTGAAAAAGAGAGTTCAAGTGTTAGTCTTGGATTTTGTTAAGGAATATGGAGTCAACAAAGATTCATATATGTTTCCCCGCAAACTGTTAGGTCTCGAAGAAGGGTTTGCTTCAAGGCATTGTGTTGGACTTAAATCCCTCCAAAACGAATGTGATGACCTCAAAAGAGTTGAAATTTCTGACACAAACCTTGTTTCGTTTATTCACACTGGGACTGCAATAGACTTGCGTCTCAGTAACGTACCCTCTCTGGTTGAGGAGTACAATAAGGATTACACCTTTCCTATATTACCAAATCTCAAGCATTTGGAGTTAACGGTCGAAGGAGATTACAAGTTGAGTCTTAGCCAATTATCGTCTTTTATGAAGGCATCTCCTTACTTACAGAGACTTGCGTTGAAGCTGCGATTCTGGGAGAACCCTTTTAATGAGGGGAGAAAAATAAAGAAAGCTGTCAAATGGCCCCACCATTACATCAAGGTAGTAGAAGTGTTAGGGTATTGTGATCGTACCAATGCTCTTGAACATGTCACGTTCTTGATGGAGAATGTTGTTGCTCTCGAAAAACTTGTTATTGTTCCTTATTGGTCGTGGGATTGTCATCATAGCGGATCAGAATCAGGAAAGAAAGAAAGGAAGAAGGAAGCAAAGGCAAGACGTCATGCTAATATGCACCTTAAAAATAGGGTTCCTTCAACAGTAGAATTTGTTTGCTTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

331

Amino Acids

38.59

Weight (kDa)

9.17

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 931
AccI GTMKAC 1 cut(s) 59
AciI CCGC 4 cut(s) 40, 232, 349, 879
AclWI GGATC 2 cut(s) 74, 889
AcsI RAATTY 3 cut(s) 263, 444, 974
AcyI GRCGYC 1 cut(s) 928
AfaI GTAC 3 cut(s) 513, 533, 781
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 9 cut(s) 263, 274, 287, 384, 443, 670, 794, 966, 988
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 2 cut(s) 673, 722
AluI AGCT 2 cut(s) 673, 722
Alw26I GTCTC 3 cut(s) 368, 506, 652
AlwI GGATC 2 cut(s) 74, 889
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 187, 731
ApeKI GCWGC 1 cut(s) 673
ApoI RAATTY 3 cut(s) 263, 444, 974
AspS9I GGNCC 2 cut(s) 188, 732
AvaI CYCGRG 1 cut(s) 83
BbvI GCAGC 1 cut(s) 660
BccI CCATC 2 cut(s) 254, 805
BcoDI GTCTC 3 cut(s) 368, 506, 652
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 224
BisI GCNGC 2 cut(s) 232, 674
BlsI GCNGC 2 cut(s) 233, 675
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 188, 732
BmiI GGNNCC 2 cut(s) 734, 960
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 650
BmuI ACTGGG 1 cut(s) 489
BoxI GACNNNNGTC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 249
BsaBI GATNNNNATC 4 cut(s) 78, 225, 870, 886
BsaHI GRCGYC 1 cut(s) 928
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 122
Bse8I GATNNNNATC 4 cut(s) 78, 225, 870, 886
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 84
BseJI GATNNNNATC 4 cut(s) 78, 225, 870, 886
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 517
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 660
Bsh1285I CGRYCG 1 cut(s) 591
BshFI GGCC 2 cut(s) 189, 733
BshVI ATCGAT 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 368, 506, 652
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 2 cut(s) 189, 733
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 83
Bsp143I GATC 6 cut(s) 79, 96, 220, 226, 775, 881
BspACI CCGC 4 cut(s) 40, 232, 349, 879
BspANI GGCC 2 cut(s) 189, 733
BspCNI CTCAG 1 cut(s) 516
BspDI ATCGAT 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 734, 960
BspPI GGATC 2 cut(s) 74, 889
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 6 cut(s) 79, 96, 220, 226, 775, 881
BssNI GRCGYC 1 cut(s) 928
Bst4CI ACNGT 4 cut(s) 116, 357, 589, 970
BstACI GRCGYC 1 cut(s) 928
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 503, 614
BstKTI GATC 6 cut(s) 82, 99, 223, 229, 778, 884
BstMAI GTCTC 3 cut(s) 368, 506, 652
BstMBI GATC 6 cut(s) 79, 96, 220, 226, 775, 881
BstMCI CGRYCG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 800
BstPAI GACNNNNGTC 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 660
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 2 cut(s) 189, 733
BsuTUI ATCGAT 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 477
Cac8I GCNNGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 188, 732
ClaI ATCGAT 1 cut(s) 249
CseI GACGC 1 cut(s) 488
Csp6I GTAC 3 cut(s) 512, 532, 780
CviAII CATG 3 cut(s) 54, 797, 932
CviJI RGCY 8 cut(s) 14, 141, 189, 212, 618, 673, 722, 733
CviKI_1 RGCY 8 cut(s) 14, 141, 189, 212, 618, 673, 722, 733
CviQI GTAC 3 cut(s) 512, 532, 780
DdeI CTNAG 2 cut(s) 503, 614
DpnI GATC 6 cut(s) 81, 98, 222, 228, 777, 883
DpnII GATC 6 cut(s) 79, 96, 220, 226, 775, 881
Eco31I GGTCTC 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 3 cut(s) 57, 800, 935
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 53, 796, 931
FauI CCCGC 1 cut(s) 356
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 232, 674
Fsp4HI GCNGC 2 cut(s) 232, 674
FspBI CTAG 2 cut(s) 18, 224
GluI GCNGC 2 cut(s) 232, 674
HaeIII GGCC 2 cut(s) 189, 733
HgaI GACGC 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 928
Hin1II CATG 3 cut(s) 57, 800, 935
HincII GTYRAC 2 cut(s) 325, 585
HindII GTYRAC 2 cut(s) 325, 585
HinfI GANTC 5 cut(s) 321, 332, 610, 678, 887
HpaI GTTAAC 1 cut(s) 585
Hpy166II GTNNAC 3 cut(s) 60, 325, 585
Hpy188I TCNGA 3 cut(s) 66, 451, 886
Hpy188III TCNNGA 7 cut(s) 83, 224, 365, 791, 808, 830, 891
Hpy8I GTNNAC 3 cut(s) 60, 325, 585
HpyAV CCTTC 5 cut(s) 365, 587, 631, 904, 972
HpyCH4III ACNGT 4 cut(s) 116, 357, 589, 970
HpyCH4IV ACGT 3 cut(s) 510, 803, 928
HpyCH4V TGCA 4 cut(s) 127, 269, 488, 943
HpyF3I CTNAG 2 cut(s) 503, 614
HpySE526I ACGT 3 cut(s) 510, 803, 928
Hsp92I GRCGYC 1 cut(s) 928
Hsp92II CATG 3 cut(s) 57, 800, 935
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 6 cut(s) 79, 96, 220, 226, 775, 881
LpnPI CCDG 5 cut(s) 171, 465, 506, 667, 876
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 1 cut(s) 650
MaeI CTAG 2 cut(s) 18, 224
MaeII ACGT 3 cut(s) 510, 803, 928
MaeIII GTNAC 2 cut(s) 506, 799
MalI GATC 6 cut(s) 81, 98, 222, 228, 777, 883
MboI GATC 6 cut(s) 79, 96, 220, 226, 775, 881
MboII GAAGA 2 cut(s) 380, 919
MfeI CAATTG 1 cut(s) 154
MluCI AATT 5 cut(s) 154, 263, 444, 620, 974
MlyI GAGTC 2 cut(s) 330, 619
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 6 cut(s) 79, 419, 440, 520, 526, 694
MseI TTAA 5 cut(s) 309, 402, 584, 696, 948
MslI CAYNNNNRTG 1 cut(s) 147
MunI CAATTG 1 cut(s) 154
NdeII GATC 6 cut(s) 79, 96, 220, 226, 775, 881
NlaIII CATG 3 cut(s) 57, 800, 935
NlaIV GGNNCC 2 cut(s) 734, 960
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 800
PciI ACATGT 1 cut(s) 796
PfeI GAWTC 3 cut(s) 332, 678, 887
PkrI GCNGC 2 cut(s) 233, 675
PleI GAGTC 2 cut(s) 329, 618
PpsI GAGTC 2 cut(s) 329, 618
PscI ACATGT 1 cut(s) 796
PshAI GACNNNNGTC 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 734, 960
PspPI GGNCC 2 cut(s) 188, 732
RsaI GTAC 3 cut(s) 513, 533, 781
RsaNI GTAC 3 cut(s) 512, 532, 780
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 5 cut(s) 309, 402, 584, 696, 948
SatI GCNGC 2 cut(s) 232, 674
Sau3AI GATC 6 cut(s) 79, 96, 220, 226, 775, 881
Sau96I GGNCC 2 cut(s) 188, 732
SchI GAGTC 2 cut(s) 330, 619
SfaNI GCATC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 5 cut(s) 154, 263, 444, 620, 974
SsiI CCGC 4 cut(s) 40, 232, 349, 879
SspMI CTAG 2 cut(s) 18, 224
TaaI ACNGT 4 cut(s) 116, 357, 589, 970
TaiI ACGT 3 cut(s) 513, 806, 931
TaqI TCGA 7 cut(s) 99, 118, 219, 249, 366, 591, 831
TasI AATT 5 cut(s) 154, 263, 444, 620, 974
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 3 cut(s) 332, 678, 887
Tru1I TTAA 5 cut(s) 309, 402, 584, 696, 948
Tru9I TTAA 5 cut(s) 309, 402, 584, 696, 948
TscAI CASTG 2 cut(s) 15, 484
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 3 cut(s) 94, 324, 650
TspRI CASTG 2 cut(s) 15, 484
XapI RAATTY 3 cut(s) 263, 444, 974
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 2 cut(s) 18, 224
ZraI GACGTC 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.