MD10G1330300.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000095
Physical Location & Seq
Reverse (-)
40877552 .. 40880115
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1330300.v1.1.491

Sequence Viewer

Length: 405 bp
ATGAAATACTTTCTAGTATTGCCACTTAAGGAAGCAGCAGCTACCAGTATCCTTTCTAGACGATGGCAGTATGTGTGGTCGTCCACTATGAATCTCGATCTGGATGCTAAATTTGAACTTGGTGAATATTTATTTCGCTTCATGGTAATGGAACCAGAACTAAAAGACCAAGAGCAGCATAGATACGTCAGTTGGGTAGATAATGTGGTGGAACAGCATAGAGGTCCAACGATTGAACACTTCCGGGCTTGCTTTTATGTAGATTTCCGTTTTTCAAGTTTGCTCGACCGGCGGGTGGAAAGTCGCGGTGACGTAAAGGCGGCGTTCAAGATTTTGGCAAAATTGAACAAGCGGAGGAAAAAGCTTGAGGTGGTGAGGACCTCCATGAGCGAGTTCGTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

135

Amino Acids

16.07

Weight (kDa)

9.44

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 306
AciI CCGC 4 cut(s) 292, 306, 320, 352
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 5 cut(s) 116, 236, 276, 328, 346
AluBI AGCT 2 cut(s) 41, 364
AluI AGCT 2 cut(s) 41, 364
ApeKI GCWGC 3 cut(s) 35, 38, 175
ApoI RAATTY 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 224, 378
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 134, 320, 385
AvaII GGWCC 2 cut(s) 224, 378
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BbvI GCAGC 3 cut(s) 47, 50, 187
BccI CCATC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciVI GTATCC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 14, 57
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 4 cut(s) 36, 39, 176, 321
BlsI GCNGC 4 cut(s) 37, 40, 177, 322
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 224, 378
BmgT120I GGNCC 2 cut(s) 224, 378
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 47, 50, 187
Bsh1236I CGCG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 244, 289
BslI CCNNNNNNNGG 1 cut(s) 295
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 4 cut(s) 292, 306, 320, 352
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 288
BssMI GATC 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 243
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 47, 50, 187
BsuI GTATCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 224, 378
CviAII CATG 2 cut(s) 142, 385
CviJI RGCY 3 cut(s) 41, 248, 364
CviKI_1 RGCY 3 cut(s) 41, 248, 364
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 224, 378
EcoO109I RGGNCCY 1 cut(s) 378
FaeI CATG 2 cut(s) 145, 388
FaiI YATR 7 cut(s) 72, 89, 143, 180, 219, 258, 386
FatI CATG 2 cut(s) 141, 384
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 4 cut(s) 36, 39, 176, 321
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 4 cut(s) 36, 39, 176, 321
FspBI CTAG 2 cut(s) 14, 57
GluI GCNGC 4 cut(s) 36, 39, 176, 321
HapII CCGG 2 cut(s) 244, 289
Hin1II CATG 2 cut(s) 145, 388
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 1 cut(s) 91
HpaII CCGG 2 cut(s) 244, 289
HphI GGTGA 3 cut(s) 134, 320, 385
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 4 cut(s) 57, 95, 101, 328
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4IV ACGT 2 cut(s) 186, 312
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpySE526I ACGT 2 cut(s) 186, 312
Hsp92II CATG 2 cut(s) 145, 388
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 58, 86, 168, 257, 302
Lsp1109I GCAGC 3 cut(s) 47, 50, 187
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 14, 57
MaeII ACGT 2 cut(s) 186, 312
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MluCI AATT 2 cut(s) 110, 341
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 5 cut(s) 215, 348, 361, 369, 391
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 2 cut(s) 244, 289
MspR9I CCNGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 145, 388
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 4 cut(s) 37, 40, 177, 322
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 2 cut(s) 224, 378
PspPPI RGGWCCY 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 4 cut(s) 36, 39, 176, 321
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 224, 378
ScrFI CCNGG 1 cut(s) 245
SetI ASST 7 cut(s) 43, 189, 226, 315, 366, 372, 383
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 2 cut(s) 224, 378
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 26, 365
SmoI CTYRAG 2 cut(s) 26, 365
Sse9I AATT 2 cut(s) 110, 341
SsiI CCGC 4 cut(s) 292, 306, 320, 352
SspI AATATT 1 cut(s) 128
SspMI CTAG 2 cut(s) 14, 57
StyD4I CCNGG 1 cut(s) 243
TaiI ACGT 2 cut(s) 189, 315
TaqI TCGA 2 cut(s) 96, 285
TasI AATT 2 cut(s) 110, 341
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 35, 38, 175
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 17, 104, 130
TspGWI ACGGA 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 224, 378
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 56
XspI CTAG 2 cut(s) 14, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.