Rroxscaffold_2G00089510

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000095
Physical Location & Seq
Forward (+)
11487520 .. 11488428
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089510.1

Sequence Viewer

Length: 651 bp
ATGCTTTCGTATTTGGGCCTCTACTTGGTCTTCTTTGAGCCCAGCCGTGTGCTTGCTTATGTTTTCTCTGCTCAGCCTTCGTTTGGCCTCTTTCTCCATTTTCGACGTGCTGATGTGACTCGAGAAGTTCTTGAGTTCTTCTTGTCTGACTGCCCAGTTCTTGAACGATTGACTGTGAATGCTGCTAACAATTTGGAGGGTCTAAGAGTTGTTGGTTCCTCAATTGCGTTGAAGCATGTAGTGTTAATAGATTGTTTTCTCCTTGACAGCATCGAGGTTCGTGATGCAAATCTTGTTTCTTTATACTTTTCAGGAATAGAGCTGAAAAACCTGCATCTCACTAATGCACCGTTCCTTGTTGAAGTATCCTACATTACCTTGATGAAGTCCATAGAGCATCCCTTCGAGCAACTCTCAAGTTGTCTTTCTCAGCTAGCAAGTCCCAAGTTAGATATAGATGGGGTGGACTACAATTGGAATCACTTATGTCCTATACTAGCAAATCTCAAGCATTTGGAACTAAAAATAGAGGTGGATTGTGTGTCCGATCTTTATATTTTAACTCGATTCATGAAGTCATCTCCTAACTTGCACAGGCTTGTGTTGAAGTCGGATAAGTTAACGTATATGGCGGTAGAGAAAGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

216

Amino Acids

24.54

Weight (kDa)

5.96

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 32 - 205 3.1e-13 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 32 - 200 3.1e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AciI CCGC 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 25, 83
AgsI TTSAA 4 cut(s) 164, 232, 362, 607
AjiI CACGTC 1 cut(s) 107
AluBI AGCT 2 cut(s) 322, 433
AluI AGCT 2 cut(s) 322, 433
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 16, 85
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 120
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 376
BfaI CTAG 2 cut(s) 434, 497
BfuAI ACCTGC 1 cut(s) 339
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 4 cut(s) 274, 279, 343, 406
BmtI GCTAGC 1 cut(s) 437
BmuI ACTGGG 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 398, 430
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 3 cut(s) 152, 400, 491
BsaBI GATNNNNATC 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 83
Bse1I ACTGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 288
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 25, 83
BseMII CTCAG 2 cut(s) 86, 443
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 41
BshFI GGCC 2 cut(s) 18, 87
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 25, 83
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 2 cut(s) 18, 87
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 547
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 1 cut(s) 632
BspANI GGCC 2 cut(s) 18, 87
BspCNI CTCAG 2 cut(s) 85, 442
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 339
BspOI GCTAGC 1 cut(s) 437
BsrI ACTGG 1 cut(s) 155
BssMI GATC 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 175, 351
BstC8I GCNNGC 2 cut(s) 54, 435
BstDEI CTNAG 3 cut(s) 72, 203, 429
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 1 cut(s) 550
BstMBI GATC 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 18, 87
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 54, 435
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 2 cut(s) 236, 571
CviJI RGCY 8 cut(s) 18, 40, 45, 76, 87, 322, 433, 598
CviKI_1 RGCY 8 cut(s) 18, 40, 45, 76, 87, 322, 433, 598
DdeI CTNAG 3 cut(s) 72, 203, 429
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 2 cut(s) 239, 574
FaqI GGGAC 1 cut(s) 426
FatI CATG 2 cut(s) 235, 570
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 434, 497
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 18, 87
Hin1II CATG 2 cut(s) 239, 574
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 3 cut(s) 118, 478, 567
HpaI GTTAAC 1 cut(s) 621
Hpy166II GTNNAC 2 cut(s) 466, 621
Hpy188I TCNGA 3 cut(s) 148, 547, 613
Hpy188III TCNNGA 6 cut(s) 122, 131, 161, 281, 312, 571
Hpy8I GTNNAC 2 cut(s) 466, 621
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 87, 412
HpyCH4III ACNGT 2 cut(s) 175, 351
HpyCH4IV ACGT 2 cut(s) 106, 623
HpyCH4V TGCA 4 cut(s) 287, 334, 347, 592
HpyF3I CTNAG 3 cut(s) 72, 203, 429
HpySE526I ACGT 2 cut(s) 106, 623
Hsp92II CATG 2 cut(s) 239, 574
KspAI GTTAAC 1 cut(s) 621
Kzo9I GATC 1 cut(s) 547
LpnPI CCDG 5 cut(s) 55, 168, 297, 344, 580
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 4 cut(s) 274, 279, 343, 406
MaeI CTAG 2 cut(s) 434, 497
MaeII ACGT 2 cut(s) 106, 623
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 2 cut(s) 22, 130
MfeI CAATTG 2 cut(s) 222, 472
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 190, 222, 472
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 6 cut(s) 29, 98, 190, 229, 268, 523
MseI TTAA 3 cut(s) 245, 560, 620
MunI CAATTG 2 cut(s) 222, 472
Mva1269I GAATGC 1 cut(s) 184
NdeII GATC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 2 cut(s) 239, 574
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 120
PagI TCATGA 1 cut(s) 570
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 478, 567
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 245, 560, 620
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 42
SetI ASST 8 cut(s) 109, 279, 324, 333, 380, 435, 534, 626
SfaNI GCATC 4 cut(s) 274, 279, 343, 406
Sfr274I CTCGAG 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 4 cut(s) 120, 131, 415, 506
SmoI CTYRAG 4 cut(s) 120, 131, 415, 506
Sse9I AATT 3 cut(s) 190, 222, 472
SsiI CCGC 1 cut(s) 632
SspMI CTAG 2 cut(s) 434, 497
TaaI ACNGT 2 cut(s) 175, 351
TaiI ACGT 2 cut(s) 109, 626
TaqI TCGA 5 cut(s) 103, 121, 273, 405, 565
TasI AATT 3 cut(s) 190, 222, 472
TfiI GAWTC 2 cut(s) 478, 567
Tru1I TTAA 3 cut(s) 245, 560, 620
Tru9I TTAA 3 cut(s) 245, 560, 620
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 398, 559, 587
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 2 cut(s) 434, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.