Rroxscaffold_3G00220490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000095
Physical Location & Seq
Forward (+)
2751707 .. 2754883
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220490.1

Sequence Viewer

Length: 402 bp
ATGGACAGCAACGCCGATTCTTGTTCGGAACTCTTTGGGAGACAATGGAGATCACAAGTATCGGTTCCGGGGACGGTGTTTGGAGGATTGGAAAGGCATTTCCTAAAAGCGAGATTCTTTGATGTTGGTTCCCTCGGTTCTATGAATCAATCCAACATTTTGGAGTGTCGTAAGCCATGGAGAATTGAAGATATAAACTTTGAAGAAAAAGTTAAAGGAAGTAGCAGAACAAACCGAGAAATTACAAGGTTGCTTCGCCTCGTGGTCGTCTCGATGCCGCAAGTTTTTCCGGCGCTTCGGGCTTTTTCTAGCTTGACAACACTTGTGGATCAAACATTGAGAAGCTTGCCGGGTTGCAACATCAAACATCATCGGTTCATTATCAACCCGTTTTGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.31

Weight (kDa)

10.17

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 278, 397
AclWI GGATC 1 cut(s) 336
AgsI TTSAA 2 cut(s) 188, 203
AluBI AGCT 2 cut(s) 312, 345
AluI AGCT 2 cut(s) 312, 345
Alw26I GTCTC 2 cut(s) 34, 274
AlwI GGATC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 69, 351
BauI CACGAG 1 cut(s) 260
BcnI CCSGG 2 cut(s) 69, 351
BcoDI GTCTC 2 cut(s) 34, 274
BfaI CTAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 69, 351
BmiI GGNNCC 2 cut(s) 66, 130
BmrFI CCNGG 2 cut(s) 69, 351
BmsI GCATC 1 cut(s) 264
BpuMI CCSGG 2 cut(s) 69, 351
BsaJI CCNNGG 3 cut(s) 68, 133, 176
BseDI CCNNGG 3 cut(s) 68, 133, 176
BsiSI CCGG 3 cut(s) 68, 290, 350
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 34, 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 50, 328
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 2 cut(s) 278, 397
BspLI GGNNCC 2 cut(s) 66, 130
BspPI GGATC 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 68, 133, 176
BssMI GATC 2 cut(s) 50, 328
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 53, 331
BstMAI GTCTC 2 cut(s) 34, 274
BstMBI GATC 2 cut(s) 50, 328
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 67, 349
BstXI CCANNNNNNTGG 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 347
CfoI GCGC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 1 cut(s) 177
CviJI RGCY 4 cut(s) 175, 302, 312, 345
CviKI_1 RGCY 4 cut(s) 175, 302, 312, 345
DpnI GATC 2 cut(s) 52, 330
DpnII GATC 2 cut(s) 50, 328
Eco130I CCWWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 180
FaiI YATR 3 cut(s) 143, 178, 194
FaqI GGGAC 1 cut(s) 85
FatI CATG 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 296
HapII CCGG 3 cut(s) 68, 290, 350
HhaI GCGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 180
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 3 cut(s) 17, 114, 145
HpaII CCGG 3 cut(s) 68, 290, 350
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
Hsp92II CATG 1 cut(s) 180
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 2 cut(s) 50, 328
LpnPI CCDG 3 cut(s) 81, 303, 363
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 309
MalI GATC 2 cut(s) 52, 330
MboI GATC 2 cut(s) 50, 328
MboII GAAGA 2 cut(s) 200, 215
MluCI AATT 2 cut(s) 183, 240
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 77, 143, 269
MseI TTAA 1 cut(s) 213
MspI CCGG 3 cut(s) 68, 290, 350
MspR9I CCNGG 2 cut(s) 69, 351
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 69, 351
NcoI CCATGG 1 cut(s) 176
NdeII GATC 2 cut(s) 50, 328
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 2 cut(s) 66, 130
PfeI GAWTC 3 cut(s) 17, 114, 145
PkrI GCNGC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 66, 130
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 2 cut(s) 50, 328
ScrFI CCNGG 2 cut(s) 69, 351
SetI ASST 3 cut(s) 251, 314, 347
SfaNI GCATC 1 cut(s) 264
Sse9I AATT 2 cut(s) 183, 240
SsiI CCGC 2 cut(s) 278, 397
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 67, 349
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 272
TasI AATT 2 cut(s) 183, 240
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 3 cut(s) 17, 114, 145
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 158, 367
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.