Rmu_sc0021523.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021523.1
OG0000095
Physical Location & Seq
Reverse (-)
120 .. 2557
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021523.1_g000001.1.cds

Sequence Viewer

Length: 918 bp
atgtttaaaggactatgctatggcatttacactgagaaatgtccacatcgtaacatcaaggttgttgaaatactagggtatcgtcatgcttcaactactgttgagcttgtcaactatatagtaaagaatgttgttgcgctagacaaaattgttattgatcctgcccggaattgggcacatcatggtaccagagcgaataagagaattgaagaggtcaagcttgaagaagaggccagagatcatgctatgcactttattagaaaagtagtgccatcaagtgtagaatttgtctgcctgacggtcactcttaagtggatattatctcgtaaacttaaagctgcttacctctactttcagtgcctttactttcagcaggcatattaccggatgaatatgtatggtgttgaaattttctcgtcgtcaaatatggtgttgagtgctgcagcaggtttgattgaagtggagggtgcggttgataagcttcaatttcggaggtccccctctacccgcgctgtgttcctctctgaaatcccaaacgcccttctttccttcctttctctctccttttcccttccccaacttcctctctccaactcggaattgcacctctgggtcaatccccaatgctggcctccccacatccttaacctctctgccaactgggttcatcaaagaaatggttttcgccaactgggtcgcactcggcttggtctaaacgagaatgacaacaccgacttgcatgggtcttggggtcttgaactcttctggttcatttcctcgatccaatcccgtcgtcgtcgaatgccgattccgatcgaaatcggcattcgattccttctgcattgcctccgaagccttctacgactacggaacacgtcgtcgttctctgacggcgattgcttcttcttcttcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

305

Amino Acids

35.39

Weight (kDa)

9.44

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000095)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04260 FvH4_1g04270 FvH4_1g04271 FvH4_1g04280 FvH4_1g15681 FvH4_1g15870 FvH4_1g15871 FvH4_1g15880 FvH4_1g15890 FvH4_1g15890 FvH4_1g15890 FvH4_2g27801 FvH4_2g38801 FvH4_3g15922 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01850 FvH4_6g01861 FvH4_6g01970 FvH4_6g01970 FvH4_6g04740 FvH4_6g05140 FvH4_6g05150 FvH4_6g05160 FvH4_6g05620 FvH4_6g43901 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150 FvH4_7g08150
malus_domestica MD02G1016200.v1.1 MD02G1024100.v1.1 MD02G1024500.v1.1 MD02G1269100.v1.1 MD05G1360100.v1.1 MD08G1218100.v1.1 MD10G1330300.v1.1 MD11G1200500.v1.1 MD12G1064700.v1.1 MD14G1064800.v1.1 MD15G1437600.v1.1
prunus_persica Prupe.1G269300_v2.0.a1 Prupe.1G269300_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404400_v2.0.a1 Prupe.1G404600_v2.0.a1 Prupe.3G194200_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.4G126500_v2.0.a1 Prupe.5G083600_v2.0.a1 Prupe.5G181600_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354300_v2.0.a1 Prupe.6G354500_v2.0.a1 Prupe.6G354600_v2.0.a1 Prupe.7G069200_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G069300_v2.0.a1 Prupe.7G247200_v2.0.a1 Prupe.8G038200_v2.0.a1 Prupe.8G159200_v2.0.a1 Prupe.8G168400_v2.0.a1 Prupe.8G213700_v2.0.a1 Prupe.I001500_v2.0.a1
pyrus_communis pycom01g10450 pycom02g01440 pycom02g02050 pycom02g02060 pycom05g32510 pycom10g27970 pycom12g05660 pycom14g05250 pycom15g14470
rosa_chinensis RchiOBHm_Chr1g0330451 RchiOBHm_Chr1g0330541 RchiOBHm_Chr1g0360451 RchiOBHm_Chr2g0105201 RchiOBHm_Chr2g0105211 RchiOBHm_Chr2g0105241 RchiOBHm_Chr2g0105251 RchiOBHm_Chr2g0105261 RchiOBHm_Chr2g0160681 RchiOBHm_Chr3g0448841 RchiOBHm_Chr3g0448851 RchiOBHm_Chr3g0449531 RchiOBHm_Chr3g0449541 RchiOBHm_Chr3g0449551 RchiOBHm_Chr3g0449571 RchiOBHm_Chr3g0449581 RchiOBHm_Chr3g0449591 RchiOBHm_Chr3g0449601 RchiOBHm_Chr3g0449821 RchiOBHm_Chr3g0471621 RchiOBHm_Chr3g0480841 RchiOBHm_Chr5g0026831 RchiOBHm_Chr5g0026841 RchiOBHm_Chr6g0298681 RchiOBHm_Chr6g0298691 RchiOBHm_Chr6g0302471 RchiOBHm_Chr7g0184471 RchiOBHm_Chr7g0184481 RchiOBHm_Chr7g0197551
rosa_laevigata RLG00000003925 RLG00000004972 RLG00000016059 RLG00000017409 RLG00000023448 RLG00000023621 RLG00000025792 RLG00000025793 RLG00000025816 RLG00000025871 RLG00000027807 RLG00000029809 RLG00000032963
rosa_multiflora Rmu_co8092536.1_g000001 Rmu_co8349415.1_g000001 Rmu_co8375699.1_g000001 Rmu_co8381287.1_g000001 Rmu_co8442591.1_g000001 Rmu_co8442591.1_g000002 Rmu_co8446009.1_g000001 Rmu_co8468183.1_g000001 Rmu_sc0000430.1_g000001 Rmu_sc0000430.1_g000004 Rmu_sc0000430.1_g000012 Rmu_sc0000610.1_g000007 Rmu_sc0001122.1_g000011 Rmu_sc0001170.1_g000015 Rmu_sc0001407.1_g000011 Rmu_sc0001557.1_g000012 Rmu_sc0001557.1_g000013 Rmu_sc0002200.1_g000011 Rmu_sc0004831.1_g000010 Rmu_sc0004838.1_g000013 Rmu_sc0006734.1_g000010 Rmu_sc0007290.1_g000003 Rmu_sc0011021.1_g000011 Rmu_sc0012217.1_g000006 Rmu_sc0012984.1_g000017 Rmu_sc0013983.1_g000003 Rmu_sc0018347.1_g000001 Rmu_sc0021523.1_g000001 Rmu_sc0026421.1_g000001 Rmu_sc0026421.1_g000002 Rmu_sc0027913.1_g000002 Rmu_sc0037242.1_g000001 Rmu_ssc0000031.1_g000002 Rmu_ssc0000031.1_g000003 Rmu_ssc0000172.1_g000019 Rmu_ssc0000337.1_g000013 Rmu_ssc0000368.1_g000069
rosa_roxburghii Rroxscaffold_1G00013770 Rroxscaffold_1G00017620 Rroxscaffold_1G00052670 Rroxscaffold_1G00052680 Rroxscaffold_1G00052690 Rroxscaffold_2G00089490 Rroxscaffold_2G00089510 Rroxscaffold_2G00138340 Rroxscaffold_2G00138350 Rroxscaffold_2G00138380 Rroxscaffold_2G00151560 Rroxscaffold_2G00151570 Rroxscaffold_3G00220490 Rroxscaffold_3G00258350 Rroxscaffold_4G00296100 Rroxscaffold_6G00400970 Rroxscaffold_6G00403030 Rroxscaffold_6G00427050 Rroxscaffold_6G00427490 Rroxscaffold_6G00427500 Rroxscaffold_6G00427640 Rroxscaffold_6G00427660 Rroxscaffold_7G00165730 Rroxscaffold_7G00165740
rosa_rugosa Rorug01G0194900 Rorug01G0277200 Rorug01G0277300 Rorug01G0277400 Rorug01G0277500 Rorug01G0277600 Rorug01G0277700 Rorug01G0277800 Rorug02G0003600 Rorug02G0126800 Rorug02G0126900 Rorug02G0484800 Rorug02G0484900 Rorug02G0623600 Rorug03G0186800 Rorug06G0314400 Rorug07G0041200 Rorug07G0041300 Rorug07G0041300 Rorug07G0041400
rosa_samantha Rh1AG107100 Rh1AG174800 Rh1AG212900 Rh1AG291000 Rh1BG085200 Rh1DG112700 Rh2AG048800 Rh2AG177600 Rh2AG549900 Rh2BG047600 Rh2BG185700 Rh2BG185800 Rh2BG186000 Rh2BG186100 Rh2BG564400 Rh2CG049700 Rh2CG182100 Rh2CG182300 Rh3BG014900 Rh3BG020400 Rh3BG020500 Rh3BG020600 Rh3BG020700 Rh3BG020800 Rh3BG020900 Rh3BG022500 Rh3BG195200 Rh3BG271900 Rh3CG019100 Rh3CG019200 Rh3CG019300 Rh3CG019400 Rh3CG021200 Rh3CG267700 Rh3DG020400 Rh3DG020500 Rh3DG020600 Rh3DG020700 Rh3DG022200 Rh3DG264000 Rh5BG185300 Rh5BG185500 Rh5BG186000 Rh5BG429000 Rh6AG427600 Rh6CG439700 Rh6DG426700 Rh7BG067600 Rh7CG067900 Rh7CG068000 Rh7CG174300 Rh7DG167300
rosa_wichuraiana Rw0G006170 Rw1G008880 Rw1G014570 Rw1G025770 Rw2G013940 Rw2G013960 Rw2G045560 Rw3G001610 Rw3G001620 Rw3G001630 Rw3G001650 Rw3G001790 Rw3G021340 Rw4G018910 Rw5G017150 Rw5G017160 Rw7G014440 Rw7G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 437
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 510
AciI CCGC 2 cut(s) 470, 508
AclWI GGATC 2 cut(s) 152, 775
AcsI RAATTY 2 cut(s) 284, 408
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 3 cut(s) 171, 172, 627
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 8 cut(s) 68, 93, 209, 224, 407, 458, 485, 758
AjiI CACGTC 1 cut(s) 876
AluBI AGCT 4 cut(s) 106, 220, 338, 481
AluI AGCT 4 cut(s) 106, 220, 338, 481
AlwI GGATC 2 cut(s) 152, 775
AoxI GGCC 2 cut(s) 231, 629
ApeKI GCWGC 3 cut(s) 338, 440, 443
ApoI RAATTY 2 cut(s) 284, 408
Asp718I GGTACC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 139, 512
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 178
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 325, 427, 455
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 907
BcnI CCSGG 1 cut(s) 166
BfaI CTAG 2 cut(s) 74, 140
BfmI CTRYAG 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 437
BisI GCNGC 3 cut(s) 339, 441, 444
BlsI GCNGC 3 cut(s) 340, 442, 445
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 495
BmgBI CACGTC 1 cut(s) 876
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 187, 497
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 2 cut(s) 670, 701
BmuI ACTGGG 2 cut(s) 670, 701
BpuMI CCSGG 1 cut(s) 166
BsaBI GATNNNNATC 2 cut(s) 812, 818
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 172, 627
Bse1I ACTGG 2 cut(s) 665, 696
Bse3DI GCAATG 1 cut(s) 841
Bse8I GATNNNNATC 2 cut(s) 812, 818
BseGI GGATG 2 cut(s) 393, 639
BseJI GATNNNNATC 2 cut(s) 812, 818
BseLI CCNNNNNNNGG 3 cut(s) 171, 172, 627
BseMI GCAATG 1 cut(s) 841
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 665, 696
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 3 cut(s) 325, 427, 455
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 816
BshFI GGCC 2 cut(s) 233, 631
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 816
BsiSI CCGG 2 cut(s) 166, 385
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 171, 172, 627
BsmFI GGGAC 1 cut(s) 481
BsmI GAATGC 2 cut(s) 807, 825
BsnI GGCC 2 cut(s) 233, 631
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 157, 238, 780, 813
BspACI CCGC 2 cut(s) 470, 508
BspANI GGCC 2 cut(s) 233, 631
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 187, 497
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 437
BspPI GGATC 2 cut(s) 152, 775
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 841
BsrI ACTGG 2 cut(s) 665, 696
BssMI GATC 4 cut(s) 157, 238, 780, 813
Bst4CI ACNGT 2 cut(s) 100, 301
Bst6I CTCTTC 3 cut(s) 204, 222, 767
BstAFI CTTAAG 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 375, 629
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 393, 639
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 2 cut(s) 139, 512
BstKTI GATC 4 cut(s) 160, 241, 783, 816
BstMBI GATC 4 cut(s) 157, 238, 780, 813
BstMCI CGRYCG 1 cut(s) 816
BstMWI GCNNNNNNNGC 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 325, 427, 455
BsuRI GGCC 2 cut(s) 233, 631
BtrI CACGTC 1 cut(s) 876
BtsCI GGATG 2 cut(s) 393, 639
BtsIMutI CAGTG 2 cut(s) 30, 362
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 375, 629
CfoI GCGC 2 cut(s) 139, 512
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 1 cut(s) 186
CviAII CATG 4 cut(s) 86, 182, 242, 740
CviJI RGCY 8 cut(s) 106, 220, 233, 338, 481, 631, 706, 855
CviKI_1 RGCY 8 cut(s) 106, 220, 233, 338, 481, 631, 706, 855
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 33
DpnI GATC 4 cut(s) 159, 240, 782, 815
DpnII GATC 4 cut(s) 157, 238, 780, 813
DraI TTTAAA 1 cut(s) 7
Eam1104I CTCTTC 3 cut(s) 204, 222, 767
EarI CTCTTC 3 cut(s) 204, 222, 767
Eco47I GGWCC 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 495
FaeI CATG 4 cut(s) 89, 185, 245, 743
FaqI GGGAC 1 cut(s) 481
FatI CATG 4 cut(s) 85, 181, 241, 739
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 3 cut(s) 339, 441, 444
FokI GGATG 2 cut(s) 400, 626
Fsp4HI GCNGC 3 cut(s) 339, 441, 444
FspBI CTAG 2 cut(s) 74, 140
GlaI GCGC 2 cut(s) 138, 511
GluI GCNGC 3 cut(s) 339, 441, 444
HaeIII GGCC 2 cut(s) 233, 631
HapII CCGG 2 cut(s) 166, 385
HhaI GCGC 2 cut(s) 139, 512
Hin1II CATG 4 cut(s) 89, 185, 245, 743
Hin6I GCGC 2 cut(s) 137, 510
HinP1I GCGC 2 cut(s) 137, 510
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 218, 479
HinfI GANTC 2 cut(s) 808, 831
HpaII CCGG 2 cut(s) 166, 385
Hpy166II GTNNAC 3 cut(s) 44, 112, 329
Hpy188I TCNGA 6 cut(s) 492, 526, 598, 813, 851, 889
Hpy188III TCNNGA 1 cut(s) 755
Hpy8I GTNNAC 3 cut(s) 44, 112, 329
Hpy99I CGWCG 6 cut(s) 421, 795, 798, 801, 880, 883
HpyAV CCTTC 5 cut(s) 551, 559, 581, 845, 866
HpyCH4III ACNGT 2 cut(s) 100, 301
HpyCH4IV ACGT 1 cut(s) 875
HpyCH4V TGCA 5 cut(s) 250, 443, 604, 739, 841
HpyF10VI GCNNNNNNNGC 1 cut(s) 852
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 875
Hsp92II CATG 4 cut(s) 89, 185, 245, 743
HspAI GCGC 2 cut(s) 137, 510
KpnI GGTACC 1 cut(s) 189
Kzo9I GATC 4 cut(s) 157, 238, 780, 813
Lsp1109I GCAGC 3 cut(s) 325, 427, 455
MaeI CTAG 2 cut(s) 74, 140
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 2 cut(s) 50, 301
MalI GATC 4 cut(s) 159, 240, 782, 815
MboI GATC 4 cut(s) 157, 238, 780, 813
MboII GAAGA 7 cut(s) 221, 236, 239, 754, 895, 898, 901
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 7 cut(s) 147, 169, 204, 284, 408, 485, 599
MmeI TCCRAC 1 cut(s) 615
MseI TTAA 4 cut(s) 6, 309, 333, 645
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 2 cut(s) 166, 385
MspR9I CCNGG 1 cut(s) 166
Mva1269I GAATGC 2 cut(s) 807, 825
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 852
NciI CCSGG 1 cut(s) 166
NdeII GATC 4 cut(s) 157, 238, 780, 813
NlaIII CATG 4 cut(s) 89, 185, 245, 743
NlaIV GGNNCC 2 cut(s) 187, 497
NmeAIII GCCGAG 1 cut(s) 682
NmuCI GTSAC 1 cut(s) 301
PctI GAATGC 2 cut(s) 807, 825
PfeI GAWTC 2 cut(s) 808, 831
PkrI GCNGC 3 cut(s) 340, 442, 445
Ple19I CGATCG 1 cut(s) 816
PpuMI RGGWCCY 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 187, 497
PspPI GGNCC 1 cut(s) 495
PspPPI RGGWCCY 1 cut(s) 495
PstI CTGCAG 1 cut(s) 445
PvuI CGATCG 1 cut(s) 816
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 6, 309, 333, 645
SatI GCNGC 3 cut(s) 339, 441, 444
Sau3AI GATC 4 cut(s) 157, 238, 780, 813
Sau96I GGNCC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 7 cut(s) 147, 169, 204, 284, 408, 485, 599
SsiI CCGC 2 cut(s) 470, 508
SspMI CTAG 2 cut(s) 74, 140
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 100, 301
TaiI ACGT 1 cut(s) 878
TaqI TCGA 4 cut(s) 779, 799, 816, 829
TasI AATT 7 cut(s) 147, 169, 204, 284, 408, 485, 599
TfiI GAWTC 2 cut(s) 808, 831
Tru1I TTAA 4 cut(s) 6, 309, 333, 645
Tru9I TTAA 4 cut(s) 6, 309, 333, 645
TscAI CASTG 2 cut(s) 37, 362
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 338, 440, 443
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 404, 656, 760
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 2 cut(s) 37, 362
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 2 cut(s) 284, 408
XspI CTAG 2 cut(s) 74, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.