FvH4_1g11160

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000145
Physical Location & Seq
Reverse (-)
6088470 .. 6089749
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11160.t1

Sequence Viewer

Length: 693 bp
ATGGCTGCTTCGATGGAGGACAGTTACCCAAACGCCATTGTTTTGAAGGTCGAGGAGGCTATCCCTTTGATGATAGAACGTGCCATTGAAGTGGTCTGCAACACCAAGTTCTACGATAAGCAGTTTCTAAACACAGATGTGCTGCAGAAAGAATGGCCGATAGTGGAGTCGTGTTTAAGGGAGTACGGTGTTGTATGCACACTGGATCTGGTTGCGGGTAAAATGGAAGTCTCTAAAACCAAAGCGGCAGAAGATGAAGACATAATTTTCAAGGCCATTGATATATTGCATCTCTTGTCGAGAAATGTTCCAGCACGTTGGGCAATACGAACCATGGATTGCAGTTGCGAACATGAGATCATCAATATTGGGAATCAAGAAGGGGGGATTTGCAAATTGTTTGGGATCAGTCACGAAAAATTTCTTGCACGGAGGAATATTCTCATTGGTGTCGTGAAGGAACTTTCTCAGGTGACTGGCTGTGGCATTTTTGGTAAGGGAAATACCATTGCTGTTCTTGGTTCACTGCAAGGAATAAAGACGGTAAAAAAGATCGTGGAAGACTGCATTGCTCATGATGTGCCTCCTGCCCCTCGTGTGCGGAGGATTAAGAAGAAGACTCAACCCAAGAAGGATGCCAGGATTAAAATGACAAGTCAAGTGATGATGAGTCTCGAGTCTTTGTGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

8.32

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 46 - 111 5.9e-10 Krr1 KH1 domain
KH_KRR1_2nd PF21800 137 - 204 3.1e-12 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 215, 245, 601
AclWI GGATC 2 cut(s) 213, 413
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 3 cut(s) 46, 89, 271
AjnI CCWGG 1 cut(s) 638
AleI CACNNNNGTG 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 235, 677
AlwI GGATC 2 cut(s) 213, 413
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 2 cut(s) 155, 273
ApeKI GCWGC 2 cut(s) 5, 142
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 674
BauI CACGAG 1 cut(s) 594
BbsI GAAGAC 3 cut(s) 264, 567, 623
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 235, 677
BfmI CTRYAG 1 cut(s) 143
BisI GCNGC 3 cut(s) 6, 143, 246
BlsI GCNGC 3 cut(s) 7, 144, 247
Bme1390I CCNGG 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 674
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 298, 625
BpiI GAAGAC 3 cut(s) 264, 567, 623
BsaJI CCNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 207, 481
Bse3DI GCAATG 2 cut(s) 507, 567
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 640
BseMI GCAATG 2 cut(s) 507, 567
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 207, 481
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 157, 275
BsiHKCI CYCGRG 1 cut(s) 674
BsmAI GTCTC 2 cut(s) 235, 677
BsnI GGCC 2 cut(s) 157, 275
BsoBI CYCGRG 1 cut(s) 674
Bsp143I GATC 4 cut(s) 205, 357, 405, 552
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 215, 245, 601
BspANI GGCC 2 cut(s) 157, 275
BspCNI CTCAG 1 cut(s) 481
BspHI TCATGA 1 cut(s) 574
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 2 cut(s) 213, 413
BsrDI GCAATG 2 cut(s) 507, 567
BsrI ACTGG 2 cut(s) 207, 481
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 205, 357, 405, 552
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 3 cut(s) 23, 188, 544
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 4 cut(s) 208, 360, 408, 555
BstMAI GTCTC 2 cut(s) 235, 677
BstMBI GATC 4 cut(s) 205, 357, 405, 552
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 3 cut(s) 264, 567, 623
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 91, 318
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 2 cut(s) 157, 275
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 640
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 200, 524
CciI TCATGA 1 cut(s) 574
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 334, 353, 575
CviJI RGCY 5 cut(s) 5, 59, 157, 275, 480
CviKI_1 RGCY 5 cut(s) 5, 59, 157, 275, 480
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 468
DpnI GATC 4 cut(s) 207, 359, 407, 554
DpnII GATC 4 cut(s) 205, 357, 405, 552
EaeI YGGCCR 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 3 cut(s) 337, 356, 578
FaiI YATR 6 cut(s) 196, 263, 284, 335, 354, 576
FatI CATG 3 cut(s) 333, 352, 574
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 6, 143, 246
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 6, 143, 246
GluI GCNGC 3 cut(s) 6, 143, 246
HaeIII GGCC 2 cut(s) 157, 275
Hin1II CATG 3 cut(s) 337, 356, 578
HinfI GANTC 5 cut(s) 167, 373, 619, 670, 677
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 1 cut(s) 692
Hpy188III TCNNGA 6 cut(s) 300, 377, 413, 454, 575, 674
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 4 cut(s) 40, 374, 451, 625
HpyCH4III ACNGT 3 cut(s) 23, 188, 544
HpyCH4IV ACGT 2 cut(s) 79, 316
HpyCH4V TGCA 9 cut(s) 99, 145, 198, 289, 342, 393, 428, 529, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 2 cut(s) 79, 316
Hsp92II CATG 3 cut(s) 337, 356, 578
Kzo9I GATC 4 cut(s) 205, 357, 405, 552
LpnPI CCDG 8 cut(s) 188, 194, 324, 455, 462, 600, 625, 652
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 298, 625
MaeII ACGT 2 cut(s) 79, 316
MaeIII GTNAC 3 cut(s) 23, 410, 472
MalI GATC 4 cut(s) 207, 359, 407, 554
MboI GATC 4 cut(s) 205, 357, 405, 552
MboII GAAGA 5 cut(s) 263, 269, 572, 625, 628
MflI RGATCY 1 cut(s) 205
MluCI AATT 3 cut(s) 264, 395, 419
MlyI GAGTC 4 cut(s) 176, 613, 679, 686
MnlI CCTC 7 cut(s) 10, 46, 49, 426, 594, 597, 603
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 176, 609, 645
MslI CAYNNNNRTG 2 cut(s) 89, 137
MspR9I CCNGG 1 cut(s) 640
MvaI CCWGG 1 cut(s) 640
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 333
NdeII GATC 4 cut(s) 205, 357, 405, 552
NlaIII CATG 3 cut(s) 337, 356, 578
NmuCI GTSAC 2 cut(s) 410, 472
OliI CACNNNNGTG 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 674
PagI TCATGA 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 3 cut(s) 7, 144, 247
PleI GAGTC 4 cut(s) 175, 613, 678, 685
PpsI GAGTC 4 cut(s) 175, 613, 678, 685
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 89, 137
SaqAI TTAA 3 cut(s) 176, 609, 645
SatI GCNGC 3 cut(s) 6, 143, 246
Sau3AI GATC 4 cut(s) 205, 357, 405, 552
SchI GAGTC 4 cut(s) 176, 613, 679, 686
ScrFI CCNGG 1 cut(s) 640
SetI ASST 4 cut(s) 51, 82, 319, 474
SfaNI GCATC 2 cut(s) 298, 625
SfcI CTRYAG 1 cut(s) 143
Sfr274I CTCGAG 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 89, 137
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 3 cut(s) 264, 395, 419
SsiI CCGC 3 cut(s) 215, 245, 601
SspI AATATT 2 cut(s) 367, 439
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 23, 188, 544
TaiI ACGT 2 cut(s) 82, 319
TaqI TCGA 4 cut(s) 11, 51, 299, 675
TasI AATT 3 cut(s) 264, 395, 419
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 3 cut(s) 176, 609, 645
Tru9I TTAA 3 cut(s) 176, 609, 645
TscAI CASTG 2 cut(s) 207, 531
TseFI GTSAC 2 cut(s) 410, 472
TseI GCWGC 2 cut(s) 5, 142
Tsp45I GTSAC 2 cut(s) 410, 472
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 207, 531
XapI RAATTY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.