MD02G1015700.v1.1

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000145
Physical Location & Seq
Forward (+)
1158187 .. 1161625
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1015700.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGAGACCAAAGAGGAGAGAAGCTTCATGGATAAGGTAATAATCAAGTGGTACGAAGATCCAGAAGTCCTCCAGATGGTGAAGAAGAGGGTTTCAACAGCGACAGCGATGATGGAGATCGACAGCATGAAGGACGTCACTGCTGGTCAGAAGAAAGTCAAGTGGTTCGAGAATCCAGAGATCCTCCAAATACTGAAGACGATGTTTGATCCTTGGCTGAACGAAGATGGCATGCCTGACGCCACCTCTTTCTTCAGCCGTTGCCCTAGAGGCTTTGAAGAGAAGTTGGTGCGGCTCTACTATCGAGATGATCCAGACATCCGCCGTATGACGGACAAGAGGTGGGGCCCTCAACTGGACGAAGATGGCAAGCCTGAAGGCCCCTCTCTACGCAGGATCTATCCAAAATGCTTTGAAAAAGATTTGCTTGAAGCTTGGCCGACGTTGAAATCTACTTTAGAAGAATACGGCATTTTATGCATAATTGATCTGGTTTTTTGTAACCTAGTATTCAGAACAACCAAGAAAACAGACCCAGATATTATTCCCAAGGCCAGGGATCTTGTTGACCTTTTATCAAAGAGTATTCCTATACCTCTGGCAATGAAAGTCCTGGGTGAAATTCAGTATGAAATGATCAGGATTGGGCATATAAGTGGTGGTCTTTGCATAAAATTTGGGATCACGCGGGACCAATATGTCGAACGACGGAAGCTTCTCATGGGTCCCTCAGGCTTAGAGGCAATTGCAGCACAGCTAGACTGCCATGTTTTCTTCCGCGAAGATTATATCATTGCTTTAGGTCCATTGCGTTGGTTGAAATTAGTAAAGAAAATTGCGGGAGATTGCATTCTTCACAAAGTGCGTCCGACTTGCATTATCAACACGATGAAACGTGACGCGCGAGTGATGCAGAGTTTTAAGCATTTGCATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

36.35

Weight (kDa)

8.65

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 133 - 205 5.3e-12 Krr1 KH1 domain
KH_KRR1_2nd PF21800 229 - 296 2.5e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AatII GACGTC 1 cut(s) 138
AccII CGCG 4 cut(s) 688, 780, 902, 904
AciI CCGC 5 cut(s) 292, 322, 688, 778, 839
AclWI GGATC 7 cut(s) 53, 175, 203, 305, 404, 567, 689
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 2 cut(s) 621, 674
AcuI CTGAAG 3 cut(s) 215, 238, 396
AcyI GRCGYC 2 cut(s) 135, 240
AdeI CACNNNGTG 1 cut(s) 862
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 4 cut(s) 76, 331, 355, 555
AgsI TTSAA 6 cut(s) 96, 278, 416, 431, 448, 820
AjnI CCWGG 2 cut(s) 554, 612
AluBI AGCT 4 cut(s) 24, 434, 715, 757
AluI AGCT 4 cut(s) 24, 434, 715, 757
AlwI GGATC 7 cut(s) 53, 175, 203, 305, 404, 567, 689
AoxI GGCC 4 cut(s) 346, 379, 437, 552
ApaI GGGCCC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 2 cut(s) 621, 674
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 6 cut(s) 346, 347, 380, 691, 725, 803
AsuHPI GGTGA 2 cut(s) 91, 629
AvaII GGWCC 3 cut(s) 691, 725, 803
AxyI CCTNAGG 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 761
BccI CCATC 4 cut(s) 70, 106, 221, 359
BceAI ACGGC 3 cut(s) 243, 309, 484
BciT130I CCWGG 2 cut(s) 556, 614
BclI TGATCA 1 cut(s) 636
BfaI CTAG 3 cut(s) 267, 506, 758
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 2 cut(s) 293, 750
BlsI GCNGC 2 cut(s) 294, 751
Bme1390I CCNGG 2 cut(s) 556, 614
Bme18I GGWCC 3 cut(s) 691, 725, 803
BmgT120I GGNCC 6 cut(s) 346, 347, 380, 691, 725, 803
BmiI GGNNCC 6 cut(s) 347, 348, 382, 692, 726, 727
BmrFI CCNGG 2 cut(s) 556, 614
BmsI GCATC 1 cut(s) 900
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 135, 240
BsaJI CCNNGG 4 cut(s) 212, 549, 555, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 331, 355, 555
Bse1I ACTGG 1 cut(s) 360
Bse21I CCTNAGG 1 cut(s) 730
Bse3DI GCAATG 3 cut(s) 609, 792, 806
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 2 cut(s) 556, 614
BseDI CCNNGG 4 cut(s) 212, 549, 555, 613
BseGI GGATG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 4 cut(s) 76, 331, 355, 555
BseMI GCAATG 3 cut(s) 609, 792, 806
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 1 cut(s) 761
Bsh1236I CGCG 4 cut(s) 688, 780, 902, 904
BshFI GGCC 4 cut(s) 348, 381, 439, 554
BslFI GGGAC 2 cut(s) 704, 711
BslI CCNNNNNNNGG 4 cut(s) 76, 331, 355, 555
BsmFI GGGAC 2 cut(s) 704, 711
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 4 cut(s) 348, 381, 439, 554
Bsp120I GGGCCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 350
BspACI CCGC 5 cut(s) 292, 322, 688, 778, 839
BspANI GGCC 4 cut(s) 348, 381, 439, 554
BspCNI CTCAG 1 cut(s) 743
BspFNI CGCG 4 cut(s) 688, 780, 902, 904
BspLI GGNNCC 6 cut(s) 347, 348, 382, 692, 726, 727
BspPI GGATC 7 cut(s) 53, 175, 203, 305, 404, 567, 689
BsrDI GCAATG 3 cut(s) 609, 792, 806
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 212, 549, 555, 613
BssNI GRCGYC 2 cut(s) 135, 240
BssT1I CCWWGG 2 cut(s) 212, 549
Bst2UI CCWGG 2 cut(s) 556, 614
Bst6I CTCTTC 2 cut(s) 80, 273
BstACI GRCGYC 2 cut(s) 135, 240
BstAPI GCANNNNNTGC 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 233, 371
BstDEI CTNAG 2 cut(s) 730, 736
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 4 cut(s) 688, 780, 902, 904
BstHHI GCGC 1 cut(s) 904
BstMWI GCNNNNNNNGC 4 cut(s) 270, 477, 749, 910
BstNI CCWGG 2 cut(s) 556, 614
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 554, 612
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 4 cut(s) 688, 780, 902, 904
BstV1I GCAGC 1 cut(s) 761
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 4 cut(s) 58, 180, 396, 559
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 4 cut(s) 58, 180, 396, 559
Bsu36I CCTNAGG 1 cut(s) 730
BsuRI GGCC 4 cut(s) 348, 381, 439, 554
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 233, 371
CfoI GCGC 1 cut(s) 904
Cfr13I GGNCC 6 cut(s) 346, 347, 380, 691, 725, 803
CseI GACGC 3 cut(s) 248, 854, 908
Csp6I GTAC 1 cut(s) 52
CviAII CATG 5 cut(s) 28, 127, 232, 721, 767
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 730, 736
DraIII CACNNNGTG 1 cut(s) 862
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 80, 273
EarI CTCTTC 2 cut(s) 80, 273
EciI GGCGGA 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 212, 549
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 691, 725, 803
Eco57I CTGAAG 3 cut(s) 215, 238, 396
Eco81I CCTNAGG 1 cut(s) 730
EcoO109I RGGNCCY 4 cut(s) 346, 347, 380, 725
EcoRII CCWGG 2 cut(s) 554, 612
EcoT14I CCWWGG 2 cut(s) 212, 549
EcoT22I ATGCAT 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 2 cut(s) 212, 549
FaeI CATG 5 cut(s) 31, 130, 235, 724, 770
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 2 cut(s) 704, 711
FatI CATG 5 cut(s) 27, 126, 231, 720, 766
FauI CCCGC 2 cut(s) 681, 832
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 293, 750
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 293, 750
FspBI CTAG 3 cut(s) 267, 506, 758
GlaI GCGC 1 cut(s) 903
GluI GCNGC 2 cut(s) 293, 750
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 4 cut(s) 348, 381, 439, 554
HgaI GACGC 3 cut(s) 248, 854, 908
HhaI GCGC 1 cut(s) 904
Hin1I GRCGYC 2 cut(s) 135, 240
Hin1II CATG 5 cut(s) 31, 130, 235, 724, 770
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 3 cut(s) 22, 432, 713
HinfI GANTC 1 cut(s) 172
HphI GGTGA 2 cut(s) 91, 629
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 150, 515, 870
Hpy188III TCNNGA 7 cut(s) 62, 73, 169, 176, 305, 314, 640
Hpy8I GTNNAC 1 cut(s) 568
Hpy99I CGWCG 2 cut(s) 445, 711
HpyAV CCTTC 2 cut(s) 124, 371
HpyCH4IV ACGT 3 cut(s) 135, 443, 895
HpyCH4V TGCA 7 cut(s) 480, 669, 749, 849, 876, 913, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 477, 749, 910
HpyF3I CTNAG 2 cut(s) 730, 736
HpySE526I ACGT 3 cut(s) 135, 443, 895
Hsp92I GRCGYC 2 cut(s) 135, 240
Hsp92II CATG 5 cut(s) 31, 130, 235, 724, 770
HspAI GCGC 1 cut(s) 902
KflI GGGWCCC 1 cut(s) 725
Ksp22I TGATCA 1 cut(s) 636
Lsp1109I GCAGC 1 cut(s) 761
LweI GCATC 1 cut(s) 900
MaeI CTAG 3 cut(s) 267, 506, 758
MaeII ACGT 3 cut(s) 135, 443, 895
MaeIII GTNAC 3 cut(s) 136, 500, 896
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 4 cut(s) 58, 180, 396, 559
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 6 cut(s) 483, 621, 674, 744, 821, 834
MmeI TCCRAC 1 cut(s) 893
Mph1103I ATGCAT 1 cut(s) 482
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 1 cut(s) 654
MspR9I CCNGG 2 cut(s) 556, 614
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 2 cut(s) 556, 614
MvnI CGCG 4 cut(s) 688, 780, 902, 904
MwoI GCNNNNNNNGC 4 cut(s) 270, 477, 749, 910
NlaIII CATG 5 cut(s) 31, 130, 235, 724, 770
NlaIV GGNNCC 6 cut(s) 347, 348, 382, 692, 726, 727
NmuCI GTSAC 2 cut(s) 136, 896
NsiI ATGCAT 1 cut(s) 482
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 901
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 294, 751
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 554, 612
PspGI CCWGG 2 cut(s) 554, 612
PspN4I GGNNCC 6 cut(s) 347, 348, 382, 692, 726, 727
PspOMI GGGCCC 1 cut(s) 346
PspPI GGNCC 6 cut(s) 346, 347, 380, 691, 725, 803
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 4 cut(s) 58, 180, 396, 559
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 2 cut(s) 293, 750
Sau96I GGNCC 6 cut(s) 346, 347, 380, 691, 725, 803
ScrFI CCNGG 2 cut(s) 556, 614
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 900
SinI GGWCC 3 cut(s) 691, 725, 803
SmiMI CAYNNNNRTG 1 cut(s) 654
SphI GCATGC 1 cut(s) 235
Sse9I AATT 6 cut(s) 483, 621, 674, 744, 821, 834
SsiI CCGC 5 cut(s) 292, 322, 688, 778, 839
SspMI CTAG 3 cut(s) 267, 506, 758
StyD4I CCNGG 2 cut(s) 554, 612
StyI CCWWGG 2 cut(s) 212, 549
TaiI ACGT 3 cut(s) 138, 446, 898
TaqI TCGA 4 cut(s) 120, 168, 304, 702
TasI AATT 6 cut(s) 483, 621, 674, 744, 821, 834
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 136, 896
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 2 cut(s) 136, 896
TspDTI ATGAA 5 cut(s) 16, 143, 620, 645, 905
TspGWI ACGGA 2 cut(s) 347, 724
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 3 cut(s) 691, 725, 803
XapI RAATTY 2 cut(s) 621, 674
XceI RCATGY 1 cut(s) 235
XspI CTAG 3 cut(s) 267, 506, 758
ZraI GACGTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.