Rmu_co8355915.1_g000001

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8355915.1
OG0000145
Physical Location & Seq
Reverse (-)
303 .. 926
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8355915.1_g000001.1.cds

Sequence Viewer

Length: 624 bp
atgagtgaagtgacatcttttggtgcgtacgtcgctaaaggtcttagtaggaataaagaggtggaccaagcctggccttttgtggagtcgtttttagaacagtatggcatttcatgcacattgcatagggttcttcgttccatgacattttcgactaccagagtgaccaaggatccagatgttatggacagtgttggtgctcttcttgaagttttgggaagtactagtgttccggggtcgaaggtgatacagatattggacggccggctgcagtatgaattcatcaagaccgggtttgaaaagggtgggctctgctcgaaatttgatgggatcgagaaggagcttgctaagaacaagcaaagattgaagcgcaacgcaaagaaccttggagacttgttggtatgtgatgtgtatattgacagaagcagtgtcgttgtagtggggagttgtgcgacagggttgaaggaaatgaggtcaattgtggaacgatgtctggttaaaaatgaagaccctgcaacagcggtgaggaggctaagatcgtgtaataagaaacagggtagtttgagattatctgatgagaagcaggtcagtttgatgaagaagcttgagggtctgtgtctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

9.15

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 574
AciI CCGC 1 cut(s) 521
AclWI GGATC 3 cut(s) 167, 180, 338
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 2 cut(s) 278, 320
AfaI GTAC 2 cut(s) 29, 223
AgsI TTSAA 4 cut(s) 209, 299, 367, 463
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 2 cut(s) 343, 604
AluI AGCT 2 cut(s) 343, 604
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 3 cut(s) 167, 180, 338
AoxI GGCC 2 cut(s) 74, 262
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 278, 320
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 2 cut(s) 234, 292
AsuHPI GGTGA 2 cut(s) 256, 535
AvaII GGWCC 1 cut(s) 64
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 2 cut(s) 234, 292
BcoDI GTCTC 1 cut(s) 384
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 574
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 73, 234, 292
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 3 cut(s) 73, 234, 292
BpiI GAAGAC 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 234, 292
BsaJI CCNNGG 3 cut(s) 168, 233, 385
Bse118I RCCGGY 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 168, 233, 385
BseMI GCAATG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 541
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 76, 264
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 3 cut(s) 233, 265, 291
BsiWI CGTACG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 384
BsnI GGCC 2 cut(s) 76, 264
Bsp1286I GDGCHC 2 cut(s) 202, 312
Bsp143I GATC 3 cut(s) 172, 330, 536
BspACI CCGC 1 cut(s) 521
BspANI GGCC 2 cut(s) 76, 264
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 273
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 3 cut(s) 167, 180, 338
BspQI GCTCTTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 168, 233, 385
BssMI GATC 3 cut(s) 172, 330, 536
BssT1I CCWWGG 2 cut(s) 168, 385
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 102, 191
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 266, 345
BstDEI CTNAG 3 cut(s) 44, 348, 533
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 3 cut(s) 175, 333, 539
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 3 cut(s) 172, 330, 536
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 32, 114
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 71, 232, 290
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 76, 264
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 196, 433
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 266, 345
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 28, 222
CviAII CATG 2 cut(s) 114, 142
CviJI RGCY 8 cut(s) 71, 76, 264, 268, 310, 343, 532, 604
CviKI_1 RGCY 8 cut(s) 71, 76, 264, 268, 310, 343, 532, 604
CviQI GTAC 2 cut(s) 28, 222
DdeI CTNAG 3 cut(s) 44, 348, 533
DpnI GATC 3 cut(s) 174, 332, 538
DpnII GATC 3 cut(s) 172, 330, 536
EaeI YGGCCR 1 cut(s) 262
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EclXI CGGCCG 1 cut(s) 262
Eco130I CCWWGG 2 cut(s) 168, 385
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 168, 385
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 168, 385
FaeI CATG 2 cut(s) 117, 145
FaiI YATR 8 cut(s) 105, 115, 126, 143, 185, 276, 403, 414
FatI CATG 2 cut(s) 113, 141
Fnu4HI GCNGC 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 76, 264
HapII CCGG 3 cut(s) 233, 265, 291
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 117, 145
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 233, 265, 291
HphI GGTGA 2 cut(s) 256, 535
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 4 cut(s) 176, 206, 286, 334
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 235, 331, 457
HpyCH4III ACNGT 2 cut(s) 102, 191
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 117, 124, 271, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 114
HpyF3I CTNAG 3 cut(s) 44, 348, 533
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 117, 145
HspAI GCGC 1 cut(s) 370
KroI GCCGGC 1 cut(s) 264
KroNI GCCGGC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 172, 330, 536
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 10, 163
MalI GATC 3 cut(s) 174, 332, 538
MboI GATC 3 cut(s) 172, 330, 536
MboII GAAGA 4 cut(s) 125, 194, 518, 610
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 202, 312
MluCI AATT 3 cut(s) 278, 320, 477
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 5 cut(s) 52, 465, 519, 522, 601
MroNI GCCGGC 1 cut(s) 264
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 3 cut(s) 233, 265, 291
MspR9I CCNGG 3 cut(s) 73, 234, 292
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 32, 114
NaeI GCCGGC 1 cut(s) 266
NciI CCSGG 2 cut(s) 234, 292
NdeII GATC 3 cut(s) 172, 330, 536
NgoMIV GCCGGC 1 cut(s) 264
NlaIII CATG 2 cut(s) 117, 145
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 10, 163
PciSI GCTCTTC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 266
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 2 cut(s) 29, 223
RsaNI GTAC 2 cut(s) 28, 222
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 172, 330, 536
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 73, 234, 292
SduI GDGCHC 2 cut(s) 202, 312
SetI ASST 9 cut(s) 33, 43, 63, 246, 345, 387, 476, 588, 606
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 278, 320, 477
SsiI CCGC 1 cut(s) 521
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 71, 232, 290
StyI CCWWGG 2 cut(s) 168, 385
TaaI ACNGT 2 cut(s) 102, 191
TaiI ACGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 152, 239, 317, 333
TasI AATT 3 cut(s) 278, 320, 477
TatI WGTACW 1 cut(s) 221
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 196, 433
TseFI GTSAC 2 cut(s) 10, 163
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 2 cut(s) 10, 163
TspDTI ATGAA 5 cut(s) 102, 271, 291, 519, 611
TspRI CASTG 2 cut(s) 196, 433
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 278, 320
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.