Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 114, 334, 365 |
| AcsI | RAATTY | 1 cut(s) | 236 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AgsI | TTSAA | 3 cut(s) | 52, 172, 236 |
| AleI | CACNNNNGTG | 1 cut(s) | 219 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 11, 43 |
| AluBI | AGCT | 2 cut(s) | 103, 193 |
| AluI | AGCT | 2 cut(s) | 103, 193 |
| Alw26I | GTCTC | 1 cut(s) | 136 |
| AlwI | GGATC | 3 cut(s) | 114, 334, 365 |
| ApeKI | GCWGC | 1 cut(s) | 190 |
| ApoI | RAATTY | 1 cut(s) | 236 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 85, 341 |
| BbsI | GAAGAC | 1 cut(s) | 165 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 136 |
| BisI | GCNGC | 1 cut(s) | 191 |
| BlsI | GCNGC | 1 cut(s) | 192 |
| BmiI | GGNNCC | 1 cut(s) | 209 |
| BpiI | GAAGAC | 1 cut(s) | 165 |
| BsaI | GGTCTC | 1 cut(s) | 136 |
| BsaWI | WCCGGW | 1 cut(s) | 255 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BsiSI | CCGG | 1 cut(s) | 256 |
| BsmAI | GTCTC | 1 cut(s) | 136 |
| Bso31I | GGTCTC | 1 cut(s) | 136 |
| Bsp143I | GATC | 4 cut(s) | 106, 278, 326, 357 |
| BspLI | GGNNCC | 1 cut(s) | 209 |
| BspPI | GGATC | 3 cut(s) | 114, 334, 365 |
| BspTNI | GGTCTC | 1 cut(s) | 136 |
| BssMI | GATC | 4 cut(s) | 106, 278, 326, 357 |
| BstKTI | GATC | 4 cut(s) | 109, 281, 329, 360 |
| BstMAI | GTCTC | 1 cut(s) | 136 |
| BstMBI | GATC | 4 cut(s) | 106, 278, 326, 357 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 1 cut(s) | 165 |
| BstX2I | RGATCY | 2 cut(s) | 106, 357 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 218 |
| BstYI | RGATCY | 2 cut(s) | 106, 357 |
| CviAII | CATG | 2 cut(s) | 274, 350 |
| CviJI | RGCY | 3 cut(s) | 103, 149, 193 |
| CviKI_1 | RGCY | 3 cut(s) | 103, 149, 193 |
| DpnI | GATC | 4 cut(s) | 108, 280, 328, 359 |
| DpnII | GATC | 4 cut(s) | 106, 278, 326, 357 |
| Eco31I | GGTCTC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| EcoRI | GAATTC | 1 cut(s) | 236 |
| FaeI | CATG | 2 cut(s) | 277, 353 |
| FaiI | YATR | 6 cut(s) | 32, 226, 275, 319, 351, 376 |
| FatI | CATG | 2 cut(s) | 273, 349 |
| Fnu4HI | GCNGC | 1 cut(s) | 191 |
| Fsp4HI | GCNGC | 1 cut(s) | 191 |
| GluI | GCNGC | 1 cut(s) | 191 |
| HapII | CCGG | 1 cut(s) | 256 |
| Hin1II | CATG | 2 cut(s) | 277, 353 |
| HinfI | GANTC | 2 cut(s) | 14, 294 |
| HpaII | CCGG | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 3 cut(s) | 201, 285, 298 |
| HpyAV | CCTTC | 5 cut(s) | 4, 121, 198, 295, 348 |
| HpyCH4IV | ACGT | 1 cut(s) | 216 |
| HpyCH4V | TGCA | 5 cut(s) | 190, 224, 263, 314, 349 |
| HpySE526I | ACGT | 1 cut(s) | 216 |
| Hsp92II | CATG | 2 cut(s) | 277, 353 |
| Kzo9I | GATC | 4 cut(s) | 106, 278, 326, 357 |
| LpnPI | CCDG | 6 cut(s) | 89, 95, 224, 226, 269, 349 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| MaeII | ACGT | 1 cut(s) | 216 |
| MalI | GATC | 4 cut(s) | 108, 280, 328, 359 |
| MboI | GATC | 4 cut(s) | 106, 278, 326, 357 |
| MboII | GAAGA | 6 cut(s) | 19, 40, 90, 164, 170, 352 |
| MfeI | CAATTG | 1 cut(s) | 177 |
| MflI | RGATCY | 2 cut(s) | 106, 357 |
| MluCI | AATT | 5 cut(s) | 33, 81, 177, 236, 340 |
| MlyI | GAGTC | 1 cut(s) | 8 |
| MnlI | CCTC | 2 cut(s) | 65, 109 |
| MroXI | GAANNNNTTC | 2 cut(s) | 85, 341 |
| MseI | TTAA | 1 cut(s) | 36 |
| MslI | CAYNNNNRTG | 1 cut(s) | 219 |
| MspA1I | CMGCKG | 1 cut(s) | 103 |
| MspI | CCGG | 1 cut(s) | 256 |
| MunI | CAATTG | 1 cut(s) | 177 |
| NdeII | GATC | 4 cut(s) | 106, 278, 326, 357 |
| NlaIII | CATG | 2 cut(s) | 277, 353 |
| NlaIV | GGNNCC | 1 cut(s) | 209 |
| OliI | CACNNNNGTG | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 2 cut(s) | 85, 341 |
| PfeI | GAWTC | 1 cut(s) | 294 |
| PkrI | GCNGC | 1 cut(s) | 192 |
| PleI | GAGTC | 1 cut(s) | 8 |
| PpsI | GAGTC | 1 cut(s) | 8 |
| PspN4I | GGNNCC | 1 cut(s) | 209 |
| PsuI | RGATCY | 2 cut(s) | 106, 357 |
| PvuII | CAGCTG | 1 cut(s) | 103 |
| RseI | CAYNNNNRTG | 1 cut(s) | 219 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| SatI | GCNGC | 1 cut(s) | 191 |
| Sau3AI | GATC | 4 cut(s) | 106, 278, 326, 357 |
| SchI | GAGTC | 1 cut(s) | 8 |
| SetI | ASST | 5 cut(s) | 76, 105, 132, 195, 219 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 219 |
| Sse9I | AATT | 5 cut(s) | 33, 81, 177, 236, 340 |
| TaiI | ACGT | 1 cut(s) | 219 |
| TaqI | TCGA | 2 cut(s) | 17, 200 |
| TasI | AATT | 5 cut(s) | 33, 81, 177, 236, 340 |
| TfiI | GAWTC | 1 cut(s) | 294 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TseI | GCWGC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 2 cut(s) | 140, 171 |
| XapI | RAATTY | 1 cut(s) | 236 |
| XmnI | GAANNNNTTC | 2 cut(s) | 85, 341 |