Rh7DG111400

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000145
Physical Location & Seq
Reverse (-)
9509691 .. 9512360
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG111400.1

Sequence Viewer

Length: 732 bp
ATGGAGAAATTTATCAAACAATGGGAATGTCTTGCCTGCTCCCTACAGGCACTTGCAGCACTGACGGGTTGCAAGCTTTTTCTTAATGAAAACAATCTTGCTGCAGTGGGTCCAGCTCCATCATTCTTGACGAATCCTTACAGATGCGTGCAAAGAAATATGGGGCGATTGAACTTCAACAACCAAATGTCGATGACATTGGAATGGAGAAAAAATGAGGTGCAAGAAGCTTGGCCTTTTGTGCACCGGTTTTTAAAAGGGTATGGCATTTCTTGCACTCTGAATACAGCTGAGCGTAGCTTGACAATATCAACTACCAGAAGGACTATGCATCCAGATATTGTGGACCAGGCTGGGGCTTTTCTTGAACTTTTGTCTACAACTACTATAGGAAAGGCAGCAGAAATACTGAATGGCCACCTGCAATATGAAGTCATCAAGACTGCGTTTCAGGATGGTGGACTTTGCGCAAAATATGAGATTGAGAAGTTAAAATCTTCTAACAATATGATTTGGATGCAGGCAGTTGCACGTCTTTTGAAGTGTGATATTTACATAAATGAATGCAGGGTGGTTGCAGTAGGGAATTCAGCTTCAGGATTGAGGCCGTTCAGGTCAGTTGTGGAATGCTGTTTTATGAAAAACGAAGATCCTGTAGCTGTTGCCAGGAGGTTAAAGCTGGATCGTAAAGTGTCCCGATTGATGAAGAAAATTCAAGCTTTGTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.45

Weight (kDa)

9.23

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 68 - 138 5.7e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 429
Acc16I TGCGCA 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 429
AccI GTMKAC 1 cut(s) 377
AclWI GGATC 2 cut(s) 644, 690
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 3 cut(s) 8, 586, 711
AcuI CTGAAG 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 172, 178, 368, 541, 716
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 2 cut(s) 348, 665
AluBI AGCT 9 cut(s) 76, 116, 230, 290, 300, 593, 659, 679, 719
AluI AGCT 9 cut(s) 76, 116, 230, 290, 300, 593, 659, 679, 719
Alw21I GWGCWC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 2 cut(s) 644, 690
AoxI GGCC 3 cut(s) 233, 415, 605
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 56, 101, 398
ApoI RAATTY 3 cut(s) 8, 586, 711
AsiGI ACCGGT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 110, 346
AvaII GGWCC 2 cut(s) 110, 346
BaeGI GKGCMC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 68, 88, 410
BccI CCATC 2 cut(s) 127, 449
BceAI ACGGC 1 cut(s) 592
BciT130I CCWGG 2 cut(s) 350, 667
BfmI CTRYAG 4 cut(s) 44, 102, 387, 654
BfuAI ACCTGC 1 cut(s) 429
BisI GCNGC 3 cut(s) 57, 102, 399
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 58, 103, 400
Bme1390I CCNGG 2 cut(s) 350, 667
Bme18I GGWCC 2 cut(s) 110, 346
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 110, 346
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 350, 667
BmsI GCATC 3 cut(s) 134, 340, 507
Bpu1102I GCTNAGC 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 246
BseBI CCWGG 2 cut(s) 350, 667
BseGI GGATG 3 cut(s) 331, 460, 522
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 3 cut(s) 68, 88, 410
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 3 cut(s) 235, 417, 607
BshTI ACCGGT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 569, 632
BsnI GGCC 3 cut(s) 235, 417, 607
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 649, 682
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 3 cut(s) 235, 417, 607
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 2 cut(s) 644, 690
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 2 cut(s) 649, 682
Bst2UI CCWGG 2 cut(s) 350, 667
BstAPI GCANNNNNTGC 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 37, 74, 149, 522
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 331, 460, 522
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 652, 685
BstMBI GATC 2 cut(s) 649, 682
BstMWI GCNNNNNNNGC 3 cut(s) 56, 241, 273
BstNI CCWGG 2 cut(s) 350, 667
BstSCI CCNGG 2 cut(s) 348, 665
BstSFI CTRYAG 4 cut(s) 44, 102, 387, 654
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 68, 88, 410
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 3 cut(s) 235, 417, 607
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 3 cut(s) 331, 460, 522
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 59, 111
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 4 cut(s) 37, 74, 149, 522
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 110, 346
CspAI ACCGGT 1 cut(s) 246
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 651, 684
DpnII GATC 2 cut(s) 649, 682
DraI TTTAAA 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 110, 346
Eco57I CTGAAG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 348, 665
EcoT22I ATGCAT 1 cut(s) 333
FaiI YATR 9 cut(s) 161, 264, 329, 389, 429, 477, 509, 557, 638
FaqI GGGAC 1 cut(s) 679
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 3 cut(s) 57, 102, 399
FokI GGATG 3 cut(s) 318, 467, 529
Fsp4HI GCNGC 3 cut(s) 57, 102, 399
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 1 cut(s) 469
GluI GCNGC 3 cut(s) 57, 102, 399
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 3 cut(s) 235, 417, 607
HapII CCGG 1 cut(s) 247
HhaI GCGC 1 cut(s) 470
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 3 cut(s) 74, 228, 717
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 247
Hpy166II GTNNAC 4 cut(s) 244, 346, 378, 461
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 7 cut(s) 127, 335, 365, 439, 452, 597, 696
Hpy8I GTNNAC 4 cut(s) 244, 346, 378, 461
HpyAV CCTTC 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 241, 273
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 532
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 649, 682
LmnI GCTCC 2 cut(s) 44, 121
Lsp1109I GCAGC 3 cut(s) 68, 88, 410
LweI GCATC 3 cut(s) 134, 340, 507
MaeII ACGT 1 cut(s) 532
MalI GATC 2 cut(s) 651, 684
MboI GATC 2 cut(s) 649, 682
MboII GAAGA 3 cut(s) 489, 659, 718
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 3 cut(s) 8, 586, 711
MluNI TGGCCA 1 cut(s) 417
MnlI CCTC 3 cut(s) 211, 597, 663
Mox20I TGGCCA 1 cut(s) 417
Mph1103I ATGCAT 1 cut(s) 333
MscI TGGCCA 1 cut(s) 417
MseI TTAA 4 cut(s) 84, 254, 491, 674
MslI CAYNNNNRTG 1 cut(s) 202
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 350, 667
Mva1269I GAATGC 2 cut(s) 569, 632
MvaI CCWGG 2 cut(s) 350, 667
MwoI GCNNNNNNNGC 3 cut(s) 56, 241, 273
NdeII GATC 2 cut(s) 649, 682
NlaIV GGNNCC 1 cut(s) 111
NsbI TGCGCA 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 333
PaqCI CACCTGC 1 cut(s) 429
PctI GAATGC 2 cut(s) 569, 632
PfeI GAWTC 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 3 cut(s) 58, 103, 400
Psp6I CCWGG 2 cut(s) 348, 665
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 348, 665
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 110, 346
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 202
SaqAI TTAA 4 cut(s) 84, 254, 491, 674
SatI GCNGC 3 cut(s) 57, 102, 399
Sau3AI GATC 2 cut(s) 649, 682
Sau96I GGNCC 2 cut(s) 110, 346
ScrFI CCNGG 2 cut(s) 350, 667
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 3 cut(s) 134, 340, 507
SfcI CTRYAG 4 cut(s) 44, 102, 387, 654
SinI GGWCC 2 cut(s) 110, 346
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 3 cut(s) 8, 586, 711
StyD4I CCNGG 2 cut(s) 348, 665
TaiI ACGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 8, 586, 711
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 4 cut(s) 84, 254, 491, 674
Tru9I TTAA 4 cut(s) 84, 254, 491, 674
TscAI CASTG 2 cut(s) 66, 111
TseI GCWGC 3 cut(s) 56, 101, 398
TspDTI ATGAA 5 cut(s) 102, 444, 576, 653, 719
TspRI CASTG 2 cut(s) 66, 111
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 110, 346
XapI RAATTY 3 cut(s) 8, 586, 711
XmiI GTMKAC 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.