Rorug03G0098900

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000145
Physical Location & Seq
Reverse (-)
7734781 .. 7735632
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0098900.1

Sequence Viewer

Length: 645 bp
ATGCAAGCAGAGAAGCAGCAGCAGCAGACATGGAAAATCACCGTCCAAGCCAAAACCAAGAAGAGCTTCAACTTCAAATTCAAGTCGACCCAAATCGTCCCCACTTGCAAGTTTCATCGATTCTCTCTTCTGATCAAGCTCCGCAAAATTATCCTCAGAGTGAAACTGAATTCAGAATCCACAGCATCATCAGTTTCGAGAAAAAGAAAAGCAACCCTCAGATCCAAGCTCCTTAGAATTTTCAAGAAAATTGGAATTCCATGCACCAAGAATCGAGACCATACTATCCATAACCCCGAATCCCAATCGCCTCTACTTAGACTGAAACAACACGTTTGCAAGGAACCAATTTCTGTTGCTACGTTGTGCACTGGAATTCTTGTGTTTCTAGCTCAGTCGATCTTCAGCATAGTTCAAAAGGGTTTCGTTGTTTATAGTTTGGCTACATTGCTCTTCTTCTTTTCCGTAGTATCCGGTAAATACAATGTGGGAAGAATTCTCAAGTTTCTGGTGATTCTAATGCTTGCGGCGTCTACCAGTTCATCAGAGCTCGACTTCAATAATTATATTAAGTTTTTCGGGAGATATGTCTCGGACTACATTGGGAAGGCTTCCAACTATGCTGCTCTTGTTTTTATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.43

Weight (kDa)

10.43

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 86, 533
AciI CCGC 2 cut(s) 142, 527
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
AcuI CTGAAG 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 6 cut(s) 70, 76, 82, 244, 416, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 5 cut(s) 66, 139, 229, 392, 550
AluI AGCT 5 cut(s) 66, 139, 229, 392, 550
Alw21I GWGCWC 2 cut(s) 371, 552
Alw26I GTCTC 2 cut(s) 270, 595
Alw44I GTGCAC 1 cut(s) 367
AlwI GGATC 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 16, 19, 22, 623
ApoI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 31, 523
BaeGI GKGCMC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 371, 552
BbvI GCAGC 4 cut(s) 28, 31, 34, 610
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 270, 595
BfaI CTAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 5 cut(s) 17, 20, 23, 528, 624
BlsI GCNGC 5 cut(s) 18, 21, 24, 529, 625
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 376, 537
Bse3DI GCAATG 1 cut(s) 446
BseCI ATCGAT 1 cut(s) 118
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 169, 232, 407
BseNI ACTGG 2 cut(s) 376, 537
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 4 cut(s) 28, 31, 34, 610
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 371, 552
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 270, 595
BsmFI GGGAC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 371, 552
Bsp143I GATC 3 cut(s) 132, 221, 399
BspACI CCGC 2 cut(s) 142, 527
BspCNI CTCAG 3 cut(s) 168, 231, 406
BspDI ATCGAT 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 1 cut(s) 216
BspQI GCTCTTC 2 cut(s) 56, 458
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 2 cut(s) 376, 537
BssMI GATC 3 cut(s) 132, 221, 399
BssNI GRCGYC 1 cut(s) 530
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 3 cut(s) 56, 132, 458
BstACI GRCGYC 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 6, 525
BstDEI CTNAG 5 cut(s) 155, 218, 233, 317, 393
BstKTI GATC 3 cut(s) 135, 224, 402
BstMAI GTCTC 2 cut(s) 270, 595
BstMBI GATC 3 cut(s) 132, 221, 399
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 28, 31, 34, 610
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 118
BsuI GTATCC 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 6, 525
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 1 cut(s) 519
CviAII CATG 2 cut(s) 30, 261
CviJI RGCY 8 cut(s) 50, 66, 139, 229, 392, 443, 550, 611
CviKI_1 RGCY 8 cut(s) 50, 66, 139, 229, 392, 443, 550, 611
DdeI CTNAG 5 cut(s) 155, 218, 233, 317, 393
DpnI GATC 3 cut(s) 134, 223, 401
DpnII GATC 3 cut(s) 132, 221, 399
Eam1104I CTCTTC 3 cut(s) 56, 132, 458
EarI CTCTTC 3 cut(s) 56, 132, 458
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 550
EcoRI GAATTC 4 cut(s) 169, 255, 375, 495
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 2 cut(s) 33, 264
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 29, 260
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 2 cut(s) 86, 533
Fnu4HI GCNGC 5 cut(s) 17, 20, 23, 528, 624
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 5 cut(s) 17, 20, 23, 528, 624
FspBI CTAG 1 cut(s) 389
GluI GCNGC 5 cut(s) 17, 20, 23, 528, 624
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 519
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 2 cut(s) 33, 264
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 5 cut(s) 120, 176, 271, 299, 514
HpaII CCGG 1 cut(s) 474
HphI GGTGA 2 cut(s) 31, 523
Hpy166II GTNNAC 3 cut(s) 87, 369, 534
Hpy188I TCNGA 6 cut(s) 132, 158, 175, 221, 547, 595
Hpy188III TCNNGA 4 cut(s) 198, 244, 275, 580
Hpy8I GTNNAC 3 cut(s) 87, 369, 534
HpyAV CCTTC 1 cut(s) 601
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 333, 362
HpyCH4V TGCA 5 cut(s) 4, 108, 264, 339, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 5 cut(s) 155, 218, 233, 317, 393
HpySE526I ACGT 2 cut(s) 333, 362
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 2 cut(s) 33, 264
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 3 cut(s) 132, 221, 399
LguI GCTCTTC 2 cut(s) 56, 458
LmnI GCTCC 2 cut(s) 144, 234
LpnPI CCDG 4 cut(s) 357, 487, 494, 550
Lsp1109I GCAGC 4 cut(s) 28, 31, 34, 610
LweI GCATC 1 cut(s) 194
MaeI CTAG 1 cut(s) 389
MaeII ACGT 2 cut(s) 333, 362
MalI GATC 3 cut(s) 134, 223, 401
MboI GATC 3 cut(s) 132, 221, 399
MboII GAAGA 6 cut(s) 73, 119, 394, 445, 448, 504
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 371, 552
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 3 cut(s) 164, 227, 321
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 570
MspI CCGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 3 cut(s) 132, 221, 399
NlaIII CATG 2 cut(s) 33, 264
NlaIV GGNNCC 1 cut(s) 345
PciSI GCTCTTC 2 cut(s) 56, 458
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 120, 176, 271, 299, 514
PkrI GCNGC 5 cut(s) 18, 21, 24, 529, 625
Psp124BI GAGCTC 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 221
SacI GAGCTC 1 cut(s) 552
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 2 cut(s) 56, 458
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 5 cut(s) 17, 20, 23, 528, 624
Sau3AI GATC 3 cut(s) 132, 221, 399
SduI GDGCHC 2 cut(s) 371, 552
SetI ASST 7 cut(s) 68, 141, 231, 336, 365, 394, 552
SfaNI GCATC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SsiI CCGC 2 cut(s) 142, 527
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 552
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 336, 365
TaqI TCGA 6 cut(s) 86, 118, 197, 274, 398, 552
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 5 cut(s) 120, 176, 271, 299, 514
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 1 cut(s) 376
TseI GCWGC 4 cut(s) 16, 19, 22, 623
TspDTI ATGAA 2 cut(s) 104, 531
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 1 cut(s) 376
VneI GTGCAC 1 cut(s) 367
XapI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
XmiI GTMKAC 2 cut(s) 86, 533
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.