FvH4_3g36450

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000145
Physical Location & Seq
Reverse (-)
31240574 .. 31242610
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36450.t1

Sequence Viewer

Length: 573 bp
ATGCACCTATCATTGTCCTTTCTCGAAGGACGAGCGACAAGGATGGAAGGAGCTTTGGCAATGGTGAAGTCATCTTTAGAGAAATATGGCATTTCTTGCACGCTGGATCTGATTAACCGTACCTTGACTATATCGACAACTGAAGCAAGCAAAGAGTACCCGGATGCTTTTGAGAAGGCTAGGCATCTTTTGCAACTTTTGACAACAACCAATGTCCCACCAGCTCTGGCAATAGATCTAGCACTGAATGGCAAGCAGCATGAATTCATCGAGATAGGATTTCAAGAAGGTGGGCTTTGCTCGATGTATGGGATCAAGAAGGAACAGTATTGTAAACGGCTGAAATGGCTCACTCGTTCTGTTAAGGGGATTAGAGAATTGACGGGCTGTGATGATATCTACTGTTCAGCTTCAGGAGGCACTATTACTGCTGTGAGTCCATCTCGTGCGGGATTGGTGGCGTTCAGAAAGGTAGTGTTGACCTGCATTGTTGAAGATACGGATCCTGCGTATTTTATAAGGAAAGCGTCGACACGGAAACTGAAGAAGAGCATCAAGCGTTTGCTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.02

Weight (kDa)

9.33

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 530
AciI CCGC 1 cut(s) 449
AclWI GGATC 4 cut(s) 114, 320, 497, 510
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 3 cut(s) 162, 396, 563
AfaI GTAC 2 cut(s) 121, 158
AgsI TTSAA 2 cut(s) 284, 494
AluBI AGCT 3 cut(s) 53, 224, 410
AluI AGCT 3 cut(s) 53, 224, 410
AlwI GGATC 4 cut(s) 114, 320, 497, 510
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 76
AsuNHI GCTAGC 1 cut(s) 565
BamHI GGATCC 1 cut(s) 502
BauI CACGAG 1 cut(s) 444
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 37, 448
BceAI ACGGC 1 cut(s) 353
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 3 cut(s) 180, 239, 566
BfuAI ACCTGC 1 cut(s) 491
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 154, 193, 561
BmtI GCTAGC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 501
BseGI GGATG 2 cut(s) 48, 169
BseJI GATNNNNATC 1 cut(s) 501
BseMI GCAATG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
Bsp143I GATC 4 cut(s) 106, 235, 312, 502
BspACI CCGC 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 491
BspOI GCTAGC 1 cut(s) 569
BspPI GGATC 4 cut(s) 114, 320, 497, 510
BspQI GCTCTTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 4 cut(s) 106, 235, 312, 502
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 119, 327, 404
Bst6I CTCTTC 1 cut(s) 542
BstAPI GCANNNNNTGC 2 cut(s) 96, 190
BstC8I GCNNGC 4 cut(s) 101, 148, 254, 567
BstF5I GGATG 2 cut(s) 48, 169
BstKTI GATC 4 cut(s) 109, 238, 315, 505
BstMBI GATC 4 cut(s) 106, 235, 312, 502
BstMWI GCNNNNNNNGC 3 cut(s) 96, 190, 346
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 3 cut(s) 106, 235, 502
BstYI RGATCY 3 cut(s) 106, 235, 502
BtsCI GGATG 2 cut(s) 48, 169
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 4 cut(s) 101, 148, 254, 567
CseI GACGC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 120, 157
CviAII CATG 1 cut(s) 260
CviJI RGCY 9 cut(s) 53, 179, 224, 295, 340, 349, 387, 410, 569
CviKI_1 RGCY 9 cut(s) 53, 179, 224, 295, 340, 349, 387, 410, 569
CviQI GTAC 2 cut(s) 120, 157
DpnI GATC 4 cut(s) 108, 237, 314, 504
DpnII GATC 4 cut(s) 106, 235, 312, 502
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 397
Eco57I CTGAAG 3 cut(s) 162, 396, 563
EcoRI GAATTC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 397
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 87, 131, 261, 309, 518
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 55, 176
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 3 cut(s) 180, 239, 566
GluI GCNGC 1 cut(s) 257
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 263
HincII GTYRAC 2 cut(s) 480, 531
HindII GTYRAC 2 cut(s) 480, 531
HinfI GANTC 1 cut(s) 436
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 335, 480, 531
Hpy188I TCNGA 2 cut(s) 111, 467
Hpy188III TCNNGA 5 cut(s) 23, 271, 284, 316, 414
Hpy8I GTNNAC 3 cut(s) 335, 480, 531
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 5 cut(s) 20, 41, 169, 281, 313
HpyCH4III ACNGT 3 cut(s) 119, 327, 404
HpyCH4V TGCA 4 cut(s) 4, 99, 193, 486
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 190, 346
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 4 cut(s) 106, 235, 312, 502
LguI GCTCTTC 1 cut(s) 542
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 7 cut(s) 89, 174, 212, 234, 399, 496, 519
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 154, 193, 561
MaeI CTAG 3 cut(s) 180, 239, 566
MalI GATC 4 cut(s) 108, 237, 314, 504
MboI GATC 4 cut(s) 106, 235, 312, 502
MboII GAAGA 3 cut(s) 506, 556, 559
MflI RGATCY 3 cut(s) 106, 235, 502
MluCI AATT 2 cut(s) 263, 377
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 1 cut(s) 410
MseI TTAA 2 cut(s) 114, 363
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 96, 190, 346
NciI CCSGG 1 cut(s) 161
NdeII GATC 4 cut(s) 106, 235, 312, 502
NheI GCTAGC 1 cut(s) 565
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 542
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
PsiI TTATAA 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 504
PsuI RGATCY 3 cut(s) 106, 235, 502
RsaI GTAC 2 cut(s) 121, 158
RsaNI GTAC 2 cut(s) 120, 157
SalI GTCGAC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 114, 363
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 4 cut(s) 106, 235, 312, 502
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 161
SetI ASST 8 cut(s) 9, 55, 125, 226, 292, 412, 474, 485
SfaNI GCATC 3 cut(s) 154, 193, 561
Sse9I AATT 2 cut(s) 263, 377
SsiI CCGC 1 cut(s) 449
SspMI CTAG 3 cut(s) 180, 239, 566
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 119, 327, 404
TaqI TCGA 5 cut(s) 24, 134, 270, 302, 530
TasI AATT 2 cut(s) 263, 377
Tru1I TTAA 2 cut(s) 114, 363
Tru9I TTAA 2 cut(s) 114, 363
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 256, 276
TspGWI ACGGA 2 cut(s) 515, 550
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 530
XspI CTAG 3 cut(s) 180, 239, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.