pycom12g17850

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000145
Physical Location & Seq
Forward (+)
20209269 .. 20209865
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17850.3

Sequence Viewer

Length: 354 bp
ATGCTGAGGATGGTAGTGGAAGGCTTCCTTGTTTACAATGTTGATCCTGCAAACTTTATGGTGACAATGGAACACAAACTATCAAATGAGACTGCTAAGAGTCGCTGCAAAAGTTGCATCAGATGTAATGCCTGGTTTGTGCAAGATGCTTGGCCTATGGTCAAGTCTTCTTTAGATGAGCACGGCATCTTAAGTGATCTGAAAATGGCTGATCGTTCCATGACAATCTCCAAAACCGTGAAGACTAAGGACCCAGAGCTTTTTCTCAGGGCCAGGATTCTTCTTGAACTGCTAGGCAGCGCTAGTATTCCAGCTTCACTTGTATGCTACTTGTCATTTCTTTGTGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

8.31

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 301
AflII CTTAAG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 2 cut(s) 131, 272
AluBI AGCT 2 cut(s) 259, 314
AluI AGCT 2 cut(s) 259, 314
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 301
AoxI GGCC 2 cut(s) 152, 270
ApeKI GCWGC 2 cut(s) 105, 297
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 250, 270
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbsI GAAGAC 2 cut(s) 159, 248
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 92, 309
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 133, 274
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 293, 303
BfoI RGCGCY 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 2 cut(s) 106, 298
BlsI GCNGC 2 cut(s) 107, 299
Bme1390I CCNGG 2 cut(s) 133, 274
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 250, 270
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 133, 274
BmsI GCATC 3 cut(s) 126, 136, 195
BpiI GAAGAC 2 cut(s) 159, 248
Bpu10I CCTNAGC 1 cut(s) 5
BseBI CCWGG 2 cut(s) 133, 274
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 92, 309
BshFI GGCC 2 cut(s) 154, 272
BsiHKAI GWGCWC 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 2 cut(s) 154, 272
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 43, 196, 211
BspANI GGCC 2 cut(s) 154, 272
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 190
BssMI GATC 3 cut(s) 43, 196, 211
Bst2UI CCWGG 2 cut(s) 133, 274
Bst4CI ACNGT 1 cut(s) 238
BstAFI CTTAAG 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 114
BstDEI CTNAG 4 cut(s) 5, 96, 246, 266
BstF5I GGATG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 3 cut(s) 46, 199, 214
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 43, 196, 211
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 2 cut(s) 133, 274
BstSCI CCNGG 2 cut(s) 131, 272
BstV1I GCAGC 2 cut(s) 92, 309
BstV2I GAAGAC 2 cut(s) 159, 248
BsuRI GGCC 2 cut(s) 154, 272
BtsCI GGATG 1 cut(s) 15
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 250, 270
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 24, 154, 209, 259, 272, 314
CviKI_1 RGCY 6 cut(s) 24, 154, 209, 259, 272, 314
DdeI CTNAG 4 cut(s) 5, 96, 246, 266
DpnI GATC 3 cut(s) 45, 198, 213
DpnII GATC 3 cut(s) 43, 196, 211
Eco47I GGWCC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 131, 272
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 59, 158, 221, 325
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 106, 298
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 106, 298
FspBI CTAG 2 cut(s) 293, 303
GlaI GCGC 1 cut(s) 301
GluI GCNGC 2 cut(s) 106, 298
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 2 cut(s) 154, 272
HhaI GCGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 2 cut(s) 100, 277
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 122, 201
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 50, 108, 117, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 4 cut(s) 5, 96, 246, 266
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 43, 196, 211
LpnPI CCDG 8 cut(s) 60, 118, 145, 253, 259, 267, 286, 324
Lsp1109I GCAGC 2 cut(s) 92, 309
LweI GCATC 3 cut(s) 126, 136, 195
MaeI CTAG 2 cut(s) 293, 303
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 45, 198, 213
MboI GATC 3 cut(s) 43, 196, 211
MboII GAAGA 3 cut(s) 159, 253, 272
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 109
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 322
MspCI CTTAAG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 133, 274
MvaI CCWGG 2 cut(s) 133, 274
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 3 cut(s) 43, 196, 211
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 107, 299
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 131, 272
PspGI CCWGG 2 cut(s) 131, 272
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 250, 270
PspPPI RGGWCCY 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 106, 298
Sau3AI GATC 3 cut(s) 43, 196, 211
Sau96I GGNCC 2 cut(s) 250, 270
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 133, 274
SduI GDGCHC 1 cut(s) 183
SetI ASST 2 cut(s) 261, 316
SfaNI GCATC 3 cut(s) 126, 136, 195
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SspMI CTAG 2 cut(s) 293, 303
StyD4I CCNGG 2 cut(s) 131, 272
TaaI ACNGT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 105, 297
Tsp45I GTSAC 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 250
XspI CTAG 2 cut(s) 293, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.