Rh7CG103600

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000145
Physical Location & Seq
Reverse (-)
7817782 .. 7819926
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG103600.1

Sequence Viewer

Length: 486 bp
ATGGAGATCTGCGCCGGTCACAAATCGGAGATGCTGTGCCCTAACTCCGACCACATGGAGTTGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACAAGCTTTACATGACTGTCTCAACCACCCCAAGGACCGAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGATTCTGTCCAAAACTACTGTTCCAACATATGTGGTAATCAATATACTGAATGGCTATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGGTGGGCTTGCCGCAATACATGGGATCAAGAAGGGAAACACTGTGACTGCCGCGGGAACTTCACTTGAGCATGTAAAGGTGGTCAGAATGGTCGTTGAAAGGTGTTATGTTGAAAATGTGAATCCTGCAACTATTGTCAGTCGCTTAAACAAGAGGAAAGATATGCTTAATGTGGAGAGAAGGCTTCAAGCTTTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.22

Weight (kDa)

8.42

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 294, 333, 335
AclWI GGATC 2 cut(s) 146, 314
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 3 cut(s) 380, 395, 470
AluBI AGCT 2 cut(s) 115, 473
AluI AGCT 2 cut(s) 115, 473
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 146, 314
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 294, 333
BlsI GCNGC 2 cut(s) 295, 334
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 21, 259
BmuI ACTGGG 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 140, 333
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 140, 333
BseLI CCNNNNNNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 274
BseSI GKGCMC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 6, 151, 306
BspACI CCGC 3 cut(s) 294, 333, 335
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 253
BspPI GGATC 2 cut(s) 146, 314
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 140, 333
BssMI GATC 3 cut(s) 6, 151, 306
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 127, 208, 325
BstC8I GCNNGC 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 9, 154, 309
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 6, 151, 306
BstNSI RCATGY 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 1 cut(s) 335
BstX2I RGATCY 2 cut(s) 6, 151
BstYI RGATCY 2 cut(s) 6, 151
BtgI CCRYGG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 144
Cfr42I CCGCGG 1 cut(s) 336
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 5 cut(s) 55, 121, 254, 302, 353
CviJI RGCY 6 cut(s) 115, 173, 243, 289, 466, 473
CviKI_1 RGCY 6 cut(s) 115, 173, 243, 289, 466, 473
DpnI GATC 3 cut(s) 8, 153, 308
DpnII GATC 3 cut(s) 6, 151, 306
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 5 cut(s) 58, 124, 257, 305, 356
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 432, 464
FatI CATG 5 cut(s) 54, 120, 253, 301, 352
FauI CCCGC 1 cut(s) 328
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 294, 333
Fsp4HI GCNGC 2 cut(s) 294, 333
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 294, 333
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 14
Hin1II CATG 5 cut(s) 58, 124, 257, 305, 356
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 113, 471
HinfI GANTC 3 cut(s) 92, 190, 403
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 28, 49, 73, 368
Hpy188III TCNNGA 4 cut(s) 155, 254, 278, 310
HpyAV CCTTC 4 cut(s) 94, 275, 307, 456
HpyCH4III ACNGT 3 cut(s) 127, 208, 325
HpyCH4V TGCA 2 cut(s) 250, 410
Hsp92II CATG 5 cut(s) 58, 124, 257, 305, 356
HspAI GCGC 1 cut(s) 12
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 3 cut(s) 6, 151, 306
LpnPI CCDG 5 cut(s) 28, 154, 168, 255, 420
LweI GCATC 2 cut(s) 21, 259
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 17, 76, 325
MalI GATC 3 cut(s) 8, 153, 308
MboI GATC 3 cut(s) 6, 151, 306
MboII GAAGA 1 cut(s) 161
MflI RGATCY 2 cut(s) 6, 151
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 42, 72, 236
MnlI CCTC 2 cut(s) 91, 429
Mph1103I ATGCAT 1 cut(s) 252
MseI TTAA 2 cut(s) 428, 450
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 335
NdeI CATATG 1 cut(s) 217
NdeII GATC 3 cut(s) 6, 151, 306
NlaIII CATG 5 cut(s) 58, 124, 257, 305, 356
NmuCI GTSAC 3 cut(s) 17, 76, 325
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 253
PfeI GAWTC 2 cut(s) 190, 403
PkrI GCNGC 2 cut(s) 295, 334
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 2 cut(s) 6, 151
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 428, 450
SatI GCNGC 2 cut(s) 294, 333
Sau3AI GATC 3 cut(s) 6, 151, 306
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 83, 117, 286, 363, 386, 475
SfaNI GCATC 2 cut(s) 21, 259
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 3 cut(s) 294, 333, 335
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 3 cut(s) 127, 208, 325
TaqII GACCGA 1 cut(s) 161
TauI GCSGC 2 cut(s) 296, 335
TfiI GAWTC 2 cut(s) 190, 403
Tru1I TTAA 2 cut(s) 428, 450
Tru9I TTAA 2 cut(s) 428, 450
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 3 cut(s) 17, 76, 325
Tsp45I GTSAC 3 cut(s) 17, 76, 325
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 144
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.