RLG00000004561

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000145
Physical Location & Seq
Forward (+)
60306955 .. 60311595
4641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004561

Sequence Viewer

Length: 936 bp
ATGGGAGTGTCTTGCCTGCTCCCTAGAGGAAAACAATCTTGCTGCAGTGGGTCCAGCTCATCATTCTTGACGGTCAGGAAGGTTGTCATTGACTGCATTGTTAGGAAGGTTGTCATTGACTGCATTGTTAACGACATGAATCCAGAAACTTGTATGAGGGAGTTGGCAACAGAATCCTTACAGATGCGTGCAAAGAAATATGGGGCGATTGAACTTCAACAACCAAATGTCGATGACATTGGAATGGAGAAGTGTGGCCCTTTTTCGGATTTATATGGCATGCTTGAAGTAACCTCTTATTCTTCATGCGTCGTAATAGGCCGAGAAAATGAGGTGCAAGAAGCTTGGCCGTTTGTGCACTGGTTTTTAAAAGGGTATGGCATTTCTTGCACACTGAATACAGCTGAGCGTAGCTTGACAATATCAACTACCAGAAGGACTATGCATCCAGATATTGTGGACCAGGCTGGGGCTTTTCTTGAACTTTTGTCTACAACTAGTATTCCGGCAACTAAGAGTGATATCCAGATGGGCGGACGAGTCATCACTCTGAGAAATCTAGATGCGGGCTCAGTTCGGGAGAAGGTGACCTGCGGAGGGGAGGCTCCGAGCCGTAATGAACGCTGCGGCTGTCATAACGCTTCTTTGCAAGTAGCCGTTGGACGTTTGCATCCCGTGCTTCCCAAATGGCTTGCAACACTGCCTGGTCGTCCAGATGAACCATGCCTGTCACGGTCGGCGACGGTCAGTTCTCCTGGAGTCTCTTGGGGTGTGGGTTACGCGGTGGTAGTTGAGGGTTATGGTTTTCAAGCTCAGGCTGTGGGTTTGGGTTTGGCAGTGGTAGTTGAGGGTTCTGGTTTTCAAGCTCATTGTGTGGGTTTGGGTTTGGTGGTGCTACCTCGACACGAGGTGTTCGTGCCCTTCTTGGGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

33.45

Weight (kDa)

6.32

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 108 - 165 6.5e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 782
AciI CCGC 5 cut(s) 534, 566, 594, 627, 782
AcoI YGGCCR 1 cut(s) 347
AdeI CACNNNGTG 1 cut(s) 910
AfiI CCNNNNNNNGG 5 cut(s) 265, 469, 597, 926, 927
AgsI TTSAA 6 cut(s) 212, 218, 287, 482, 809, 863
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 3 cut(s) 462, 703, 754
AluBI AGCT 6 cut(s) 57, 344, 404, 414, 812, 866
AluI AGCT 6 cut(s) 57, 344, 404, 414, 812, 866
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 766
Alw44I GTGCAC 1 cut(s) 356
AoxI GGCC 3 cut(s) 256, 319, 347
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 42, 624
AspS9I GGNCC 3 cut(s) 51, 257, 460
AsuHPI GGTGA 1 cut(s) 598
AvaII GGWCC 2 cut(s) 51, 460
BaeGI GKGCMC 2 cut(s) 360, 921
BanII GRGCYC 1 cut(s) 572
BauI CACGAG 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 29, 611
BccI CCATC 1 cut(s) 523
BceAI ACGGC 3 cut(s) 334, 597, 641
BciT130I CCWGG 3 cut(s) 464, 705, 756
BcoDI GTCTC 1 cut(s) 766
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 3 cut(s) 24, 498, 560
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 3 cut(s) 43, 625, 628
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 3 cut(s) 44, 626, 629
Bme1390I CCNGG 3 cut(s) 464, 705, 756
Bme18I GGWCC 2 cut(s) 51, 460
BmgT120I GGNCC 3 cut(s) 51, 257, 460
BmiI GGNNCC 2 cut(s) 52, 606
BmrFI CCNGG 3 cut(s) 464, 705, 756
BmsI GCATC 4 cut(s) 174, 454, 553, 679
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 813
Bpu1102I GCTNAGC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 469, 597, 926, 927
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 3 cut(s) 464, 705, 756
BseGI GGATG 2 cut(s) 445, 670
BseLI CCNNNNNNNGG 5 cut(s) 265, 469, 597, 926, 927
BseMII CTCAG 4 cut(s) 396, 542, 585, 827
BseNI ACTGG 1 cut(s) 365
BseSI GKGCMC 2 cut(s) 360, 921
BseXI GCAGC 2 cut(s) 29, 611
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 782
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 3 cut(s) 258, 321, 349
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 5 cut(s) 265, 469, 597, 926, 927
BsmAI GTCTC 1 cut(s) 766
BsnI GGCC 3 cut(s) 258, 321, 349
Bsp1286I GDGCHC 3 cut(s) 360, 572, 921
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 5 cut(s) 534, 566, 594, 627, 782
BspANI GGCC 3 cut(s) 258, 321, 349
BspCNI CTCAG 4 cut(s) 397, 543, 584, 826
BspFNI CGCG 1 cut(s) 782
BspLI GGNNCC 2 cut(s) 52, 606
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 599
BsrI ACTGG 1 cut(s) 365
BssSI CACGAG 1 cut(s) 905
Bst2BI CACGAG 1 cut(s) 905
Bst2UI CCWGG 3 cut(s) 464, 705, 756
Bst4CI ACNGT 3 cut(s) 73, 735, 745
BstAPI GCANNNNNTGC 2 cut(s) 387, 676
BstC8I GCNNGC 5 cut(s) 17, 189, 281, 568, 693
BstDEI CTNAG 5 cut(s) 405, 513, 551, 571, 813
BstEII GGTNACC 1 cut(s) 586
BstF5I GGATG 2 cut(s) 445, 670
BstFNI CGCG 1 cut(s) 782
BstMAI GTCTC 1 cut(s) 766
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 3 cut(s) 355, 387, 676
BstNI CCWGG 3 cut(s) 464, 705, 756
BstNSI RCATGY 1 cut(s) 283
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 462, 703, 754
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 2 cut(s) 360, 921
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 29, 611
BsuRI GGCC 3 cut(s) 258, 321, 349
BtsCI GGATG 2 cut(s) 445, 670
BtsI GCAGTG 3 cut(s) 52, 698, 843
BtsIMutI CAGTG 5 cut(s) 52, 358, 392, 698, 843
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 5 cut(s) 17, 189, 281, 568, 693
Cfr13I GGNCC 3 cut(s) 51, 257, 460
CseI GACGC 1 cut(s) 298
CviAII CATG 4 cut(s) 136, 280, 306, 723
DdeI CTNAG 5 cut(s) 405, 513, 551, 571, 813
DraI TTTAAA 1 cut(s) 369
DraIII CACNNNGTG 1 cut(s) 910
EaeI YGGCCR 1 cut(s) 347
EciI GGCGGA 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 51, 460
Eco91I GGTNACC 1 cut(s) 586
EcoO65I GGTNACC 1 cut(s) 586
EcoRII CCWGG 3 cut(s) 462, 703, 754
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 572
FaeI CATG 4 cut(s) 139, 283, 309, 726
FatI CATG 4 cut(s) 135, 279, 305, 722
FauI CCCGC 1 cut(s) 559
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 3 cut(s) 43, 625, 628
FokI GGATG 2 cut(s) 432, 657
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 3 cut(s) 43, 625, 628
FspBI CTAG 3 cut(s) 24, 498, 560
GluI GCNGC 3 cut(s) 43, 625, 628
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 3 cut(s) 258, 321, 349
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 298
Hin1II CATG 4 cut(s) 139, 283, 309, 726
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 4 cut(s) 139, 173, 540, 759
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 4 cut(s) 130, 358, 460, 492
Hpy188I TCNGA 3 cut(s) 268, 552, 609
Hpy188III TCNNGA 9 cut(s) 67, 76, 143, 449, 479, 526, 560, 578, 713
Hpy8I GTNNAC 4 cut(s) 130, 358, 460, 492
Hpy99I CGWCG 2 cut(s) 314, 745
HpyAV CCTTC 5 cut(s) 73, 100, 429, 577, 931
HpyCH4III ACNGT 3 cut(s) 73, 735, 745
HpyCH4IV ACGT 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 3 cut(s) 355, 387, 676
HpyF3I CTNAG 5 cut(s) 405, 513, 551, 571, 813
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 4 cut(s) 139, 283, 309, 726
KspAI GTTAAC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 24, 610
Lsp1109I GCAGC 2 cut(s) 29, 611
LweI GCATC 4 cut(s) 174, 454, 553, 679
MaeI CTAG 3 cut(s) 24, 498, 560
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 4 cut(s) 289, 586, 729, 776
MboII GAAGA 1 cut(s) 294
MhlI GDGCHC 3 cut(s) 360, 572, 921
MlyI GAGTC 2 cut(s) 549, 768
MmeI TCCRAC 1 cut(s) 640
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 3 cut(s) 129, 368, 934
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 3 cut(s) 464, 705, 756
MvaI CCWGG 3 cut(s) 464, 705, 756
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 3 cut(s) 355, 387, 676
NlaIII CATG 4 cut(s) 139, 283, 309, 726
NlaIV GGNNCC 2 cut(s) 52, 606
NmeAIII GCCGAG 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 586, 729
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 912
PfeI GAWTC 2 cut(s) 139, 173
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 3 cut(s) 44, 626, 629
PleI GAGTC 2 cut(s) 548, 767
PpsI GAGTC 2 cut(s) 548, 767
Psp6I CCWGG 3 cut(s) 462, 703, 754
PspEI GGTNACC 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 3 cut(s) 462, 703, 754
PspN4I GGNNCC 2 cut(s) 52, 606
PspPI GGNCC 3 cut(s) 51, 257, 460
PstI CTGCAG 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 129, 368, 934
SatI GCNGC 3 cut(s) 43, 625, 628
Sau96I GGNCC 3 cut(s) 51, 257, 460
SchI GAGTC 2 cut(s) 549, 768
ScrFI CCNGG 3 cut(s) 464, 705, 756
SduI GDGCHC 3 cut(s) 360, 572, 921
SfaNI GCATC 4 cut(s) 174, 454, 553, 679
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 2 cut(s) 51, 460
SmiMI CAYNNNNRTG 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 497
SphI GCATGC 1 cut(s) 283
SsiI CCGC 5 cut(s) 534, 566, 594, 627, 782
SspMI CTAG 3 cut(s) 24, 498, 560
StyD4I CCNGG 3 cut(s) 462, 703, 754
TaaI ACNGT 3 cut(s) 73, 735, 745
TaiI ACGT 1 cut(s) 667
TaqI TCGA 2 cut(s) 231, 901
TauI GCSGC 1 cut(s) 630
TfiI GAWTC 2 cut(s) 139, 173
Tru1I TTAA 3 cut(s) 129, 368, 934
Tru9I TTAA 3 cut(s) 129, 368, 934
TscAI CASTG 5 cut(s) 52, 365, 399, 705, 843
TseFI GTSAC 2 cut(s) 586, 729
TseI GCWGC 2 cut(s) 42, 624
Tsp45I GTSAC 2 cut(s) 586, 729
TspDTI ATGAA 4 cut(s) 152, 294, 633, 732
TspRI CASTG 5 cut(s) 52, 365, 399, 705, 843
VneI GTGCAC 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 51, 460
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 3 cut(s) 24, 498, 560
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.