Rw2G004580

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000145
Physical Location & Seq
Forward (+)
4330453 .. 4331840
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004580.1

Sequence Viewer

Length: 1245 bp
ATGGAGATGGATAAGTCCGGCCCTTCTTCTTCGAACGAGGAGACCTCTTTCTCTGCGTTCTTCTCTGAAAAACGACAACTAAAGTTGCAAGACGTCTGGCCGGAGCTGGAGTCGTCTTTAGATTCCTATGGCATTTCATGCGCCATTAATCTTCCCCAGCGCTCAGTAACAATCTCAAGGACCCCAACGACCAAGGGTCGAAACTATTACGACAAGGCCAAGAGTGTCGTCGAGCTTCTTGCAACAACTCAAGTGCCACCGCATCTGGCACTGGAAGTATTGAACGGAAATTGGAGATTTCATACTCTAATTAAGACCGGGAATCAAGAAGGTGGGTTCTGCTCCAAGTTCGGCATCAGCCCTGACCAGTTTGCTAAACGAAGGGACTGGCTTGCCGGATCCCTAGAGGCAATTTCGGCACTGACGCTTTGTCATCTTTATGTTAATGAAAACACTGCTGCTGCGGTGGGTTCGGCTGCTTCGGTATTAGAGTTTAGGAGGATTGTGGAAAACTGCATTGTTGGTGATGTGAATCCGGCAGAGTCTAACAACAAGATTAAAAAGTTTTTGAGTTATAAAAAGCACGTGCTGCAGAAACGTGGGGTGGATTGCACGGCAGTATTGGAGAAGTCTGGCATGAGTGAAGTGACATCTTTTGGTGCGTACGTCGCTAAAGGTCTTAGTAGGAATAAAGAGGTGGACCAAGCCTGGCCTTTTGTGGAGTCGTTTTTAGAACAGTATGGCATTTCATGCACATTGCATAGGATTCTTCGTTCCATGACATTTTCGACTACCAGAGTGACCAAGGATCCAGATGTTATGGACAGTGTTGGTGCTCTTCTTGAAGTTTTGGGAAGTACTAGTGTTCCGGGGTCGAAGGTGATACAGATATTGGACGGCCGGCTGCAGTATGAATTCATCAAGACCGGGTTTGAAAAGGGTGGGCTCTGCTCGAAATTTGATGGGATCGAGAAGGAGCTTGCTAAGAACAAGCAAAGATTGAAGCGCAACGCAAAGAACCTTGGAGACTTGTTGGTATGTGATGTGTATATTGACAGAAGCAGTGTCGTTGTAGCGGGGAGTTGTGCGACAGGGTTGAAGGAAATGAGGTCAATTGTGGAACGATGTCTGGTTAAAAATGAAGACCCTGCAACAGCGGTGAGGAGGCTAAGATCGTGTAATAAGAAACAGGGTAGTTTGAGATTATCTGATGAGAAGCAGTATGAATTCATTCCTCGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

46.0

Weight (kDa)

9.04

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 122 - 190 7.1e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AatII GACGTC 1 cut(s) 96
AciI CCGC 4 cut(s) 260, 464, 1076, 1157
AclWI GGATC 5 cut(s) 393, 406, 803, 816, 974
AcoI YGGCCR 2 cut(s) 98, 898
AcsI RAATTY 3 cut(s) 914, 956, 1226
AcvI CACGTG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 665, 859
AfeI AGCGCT 1 cut(s) 161
AgsI TTSAA 5 cut(s) 283, 845, 935, 1003, 1099
AhdI GACNNNNNGTC 2 cut(s) 195, 429
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 1 cut(s) 707
AloI GAACNNNNNNTCC 2 cut(s) 757, 789
AluBI AGCT 3 cut(s) 106, 235, 979
AluI AGCT 3 cut(s) 106, 235, 979
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 2 cut(s) 35, 1020
AlwI GGATC 5 cut(s) 393, 406, 803, 816, 974
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 5 cut(s) 19, 98, 216, 710, 898
ApeKI GCWGC 5 cut(s) 458, 461, 476, 589, 904
ApoI RAATTY 3 cut(s) 914, 956, 1226
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 1230
AspLEI GCGC 3 cut(s) 143, 162, 1008
AspS9I GGNCC 3 cut(s) 20, 180, 700
AsuC2I CCSGG 3 cut(s) 319, 870, 928
AsuHPI GGTGA 3 cut(s) 536, 892, 1171
AsuII TTCGAA 1 cut(s) 32
AvaII GGWCC 2 cut(s) 180, 700
BamHI GGATCC 2 cut(s) 398, 808
BanII GRGCYC 1 cut(s) 948
BbrPI CACGTG 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 5 cut(s) 445, 448, 463, 576, 891
BccI CCATC 1 cut(s) 956
BceAI ACGGC 2 cut(s) 630, 913
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 709
BcnI CCSGG 3 cut(s) 319, 870, 928
BcoDI GTCTC 2 cut(s) 35, 1020
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 2 cut(s) 404, 861
BfmI CTRYAG 2 cut(s) 590, 905
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 5 cut(s) 459, 462, 477, 590, 905
BlsI GCNGC 5 cut(s) 460, 463, 478, 591, 906
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 4 cut(s) 319, 709, 870, 928
Bme18I GGWCC 2 cut(s) 180, 700
BmeRI GACNNNNNGTC 2 cut(s) 195, 429
BmgT120I GGNCC 3 cut(s) 20, 180, 700
BmiI GGNNCC 3 cut(s) 182, 400, 810
BmrFI CCNGG 4 cut(s) 319, 709, 870, 928
BmsI GCATC 2 cut(s) 271, 363
BpiI GAAGAC 1 cut(s) 1149
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 160, 234
BpuMI CCSGG 3 cut(s) 319, 870, 928
BsaAI YACGTR 1 cut(s) 586
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 4 cut(s) 192, 804, 869, 1021
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse118I RCCGGY 1 cut(s) 900
Bse1I ACTGG 3 cut(s) 276, 367, 392
Bse3DI GCAATG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 4 cut(s) 192, 804, 869, 1021
BseJI GATNNNNATC 1 cut(s) 531
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 3 cut(s) 276, 367, 392
BseRI GAGGAG 2 cut(s) 53, 1177
BseX3I CGGCCG 1 cut(s) 898
BseXI GCAGC 5 cut(s) 445, 448, 463, 576, 891
BseYI CCCAGC 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 5 cut(s) 21, 100, 218, 712, 900
BsiEI CGRYCG 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 8 cut(s) 18, 101, 318, 396, 536, 869, 901, 927
BsiWI CGTACG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 35, 1020
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 5 cut(s) 21, 100, 218, 712, 900
Bso31I GGTCTC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 838, 948
Bsp143I GATC 4 cut(s) 398, 808, 966, 1172
BspACI CCGC 4 cut(s) 260, 464, 1076, 1157
BspANI GGCC 5 cut(s) 21, 100, 218, 712, 900
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 182, 400, 810
BspMAI CTGCAG 2 cut(s) 594, 909
BspPI GGATC 5 cut(s) 393, 406, 803, 816, 974
BspQI GCTCTTC 1 cut(s) 843
BspT104I TTCGAA 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 755
BsrFI RCCGGY 1 cut(s) 900
BsrI ACTGG 3 cut(s) 276, 367, 392
BssAI RCCGGY 1 cut(s) 900
BssECI CCNNGG 4 cut(s) 192, 804, 869, 1021
BssMI GATC 4 cut(s) 398, 808, 966, 1172
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 3 cut(s) 192, 804, 1021
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 738, 827
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 3 cut(s) 138, 589, 750
BstBAI YACGTR 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 393, 902, 981
BstDEI CTNAG 4 cut(s) 163, 680, 984, 1169
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 3 cut(s) 143, 162, 1008
BstKTI GATC 4 cut(s) 401, 811, 969, 1175
BstMAI GTCTC 2 cut(s) 35, 1020
BstMBI GATC 4 cut(s) 398, 808, 966, 1172
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 5 cut(s) 138, 416, 589, 668, 750
BstNI CCWGG 1 cut(s) 709
BstSCI CCNGG 4 cut(s) 317, 707, 868, 926
BstSFI CTRYAG 2 cut(s) 590, 905
BstV1I GCAGC 5 cut(s) 445, 448, 463, 576, 891
BstV2I GAAGAC 1 cut(s) 1149
BstX2I RGATCY 2 cut(s) 398, 808
BstYI RGATCY 2 cut(s) 398, 808
BstZI CGGCCG 1 cut(s) 898
BsuRI GGCC 5 cut(s) 21, 100, 218, 712, 900
BtsI GCAGTG 2 cut(s) 453, 1069
BtsIMutI CAGTG 5 cut(s) 269, 419, 453, 832, 1069
Cac8I GCNNGC 3 cut(s) 393, 902, 981
CfoI GCGC 3 cut(s) 143, 162, 1008
Cfr10I RCCGGY 1 cut(s) 900
Cfr13I GGNCC 3 cut(s) 20, 180, 700
CseI GACGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 664, 858
CviAII CATG 4 cut(s) 138, 637, 750, 778
CviQI GTAC 2 cut(s) 664, 858
DdeI CTNAG 4 cut(s) 163, 680, 984, 1169
DpnI GATC 4 cut(s) 400, 810, 968, 1174
DpnII GATC 4 cut(s) 398, 808, 966, 1172
DriI GACNNNNNGTC 2 cut(s) 195, 429
EaeI YGGCCR 2 cut(s) 98, 898
EagI CGGCCG 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 843
Eam1105I GACNNNNNGTC 2 cut(s) 195, 429
EarI CTCTTC 1 cut(s) 843
EclXI CGGCCG 1 cut(s) 898
Eco130I CCWWGG 3 cut(s) 192, 804, 1021
Eco24I GRGCYC 1 cut(s) 948
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 180, 700
Eco47III AGCGCT 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 898
Eco72I CACGTG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 2 cut(s) 914, 1226
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 3 cut(s) 192, 804, 1021
EcoT38I GRGCYC 1 cut(s) 948
ErhI CCWWGG 3 cut(s) 192, 804, 1021
FaeI CATG 4 cut(s) 141, 640, 753, 781
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 137, 636, 749, 777
FauI CCCGC 1 cut(s) 1069
Fnu4HI GCNGC 5 cut(s) 459, 462, 477, 590, 905
FriOI GRGCYC 1 cut(s) 948
Fsp4HI GCNGC 5 cut(s) 459, 462, 477, 590, 905
FspBI CTAG 2 cut(s) 404, 861
GlaI GCGC 3 cut(s) 142, 161, 1007
GluI GCNGC 5 cut(s) 459, 462, 477, 590, 905
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 5 cut(s) 21, 100, 218, 712, 900
HapII CCGG 8 cut(s) 18, 101, 318, 396, 536, 869, 901, 927
HgaI GACGC 1 cut(s) 433
HhaI GCGC 3 cut(s) 143, 162, 1008
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 4 cut(s) 141, 640, 753, 781
Hin6I GCGC 3 cut(s) 141, 160, 1006
HinP1I GCGC 3 cut(s) 141, 160, 1006
HinfI GANTC 7 cut(s) 110, 122, 322, 532, 542, 722, 766
HpaII CCGG 8 cut(s) 18, 101, 318, 396, 536, 869, 901, 927
HphI GGTGA 3 cut(s) 536, 892, 1171
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 67, 1210
Hpy188III TCNNGA 5 cut(s) 326, 812, 842, 922, 970
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 3 cut(s) 233, 671, 1242
HpyAV CCTTC 6 cut(s) 33, 323, 375, 871, 967, 1093
HpyCH4III ACNGT 2 cut(s) 738, 827
HpyCH4IV ACGT 5 cut(s) 93, 585, 598, 666, 1240
HpyCH4V TGCA 9 cut(s) 88, 242, 516, 592, 612, 753, 760, 907, 1151
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 416, 589, 668, 750
HpyF3I CTNAG 4 cut(s) 163, 680, 984, 1169
HpySE526I ACGT 5 cut(s) 93, 585, 598, 666, 1240
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 4 cut(s) 141, 640, 753, 781
HspAI GCGC 3 cut(s) 141, 160, 1006
KroI GCCGGC 1 cut(s) 900
KroNI GCCGGC 1 cut(s) 902
Kzo9I GATC 4 cut(s) 398, 808, 966, 1172
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 3 cut(s) 103, 347, 976
Lsp1109I GCAGC 5 cut(s) 445, 448, 463, 576, 891
LweI GCATC 2 cut(s) 271, 363
MaeI CTAG 2 cut(s) 404, 861
MaeII ACGT 5 cut(s) 93, 585, 598, 666, 1240
MaeIII GTNAC 3 cut(s) 166, 646, 799
MalI GATC 4 cut(s) 400, 810, 968, 1174
MboI GATC 4 cut(s) 398, 808, 966, 1172
MboII GAAGA 7 cut(s) 18, 21, 52, 143, 761, 830, 1154
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 2 cut(s) 398, 808
MhlI GDGCHC 2 cut(s) 838, 948
MluCI AATT 7 cut(s) 289, 309, 411, 914, 956, 1113, 1226
MlyI GAGTC 3 cut(s) 119, 551, 731
MnlI CCTC 9 cut(s) 31, 55, 400, 492, 688, 1101, 1155, 1158, 1245
MroNI GCCGGC 1 cut(s) 900
MroXI GAANNNNTTC 1 cut(s) 1230
MseI TTAA 5 cut(s) 147, 312, 444, 558, 1134
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 8 cut(s) 18, 101, 318, 396, 536, 869, 901, 927
MspR9I CCNGG 4 cut(s) 319, 709, 870, 928
MunI CAATTG 1 cut(s) 1113
MvaI CCWGG 1 cut(s) 709
MwoI GCNNNNNNNGC 5 cut(s) 138, 416, 589, 668, 750
NaeI GCCGGC 1 cut(s) 902
NciI CCSGG 3 cut(s) 319, 870, 928
NdeII GATC 4 cut(s) 398, 808, 966, 1172
NgoMIV GCCGGC 1 cut(s) 900
NlaIII CATG 4 cut(s) 141, 640, 753, 781
NlaIV GGNNCC 3 cut(s) 182, 400, 810
NmuCI GTSAC 2 cut(s) 646, 799
NspV TTCGAA 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 843
PdiI GCCGGC 1 cut(s) 902
PdmI GAANNNNTTC 1 cut(s) 1230
PfeI GAWTC 4 cut(s) 122, 322, 532, 766
Pfl23II CGTACG 1 cut(s) 663
PkrI GCNGC 5 cut(s) 460, 463, 478, 591, 906
PleI GAGTC 3 cut(s) 118, 550, 730
PmaCI CACGTG 1 cut(s) 586
PmlI CACGTG 1 cut(s) 586
PpsI GAGTC 3 cut(s) 118, 550, 730
Ppu21I YACGTR 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 180
PshBI ATTAAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 707
PspCI CACGTG 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 707
PspLI CGTACG 1 cut(s) 663
PspN4I GGNNCC 3 cut(s) 182, 400, 810
PspPI GGNCC 3 cut(s) 20, 180, 700
PspPPI RGGWCCY 1 cut(s) 180
PstI CTGCAG 2 cut(s) 594, 909
PsuI RGATCY 2 cut(s) 398, 808
RsaI GTAC 2 cut(s) 665, 859
RsaNI GTAC 2 cut(s) 664, 858
RseI CAYNNNNRTG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 5 cut(s) 147, 312, 444, 558, 1134
SatI GCNGC 5 cut(s) 459, 462, 477, 590, 905
Sau3AI GATC 4 cut(s) 398, 808, 966, 1172
Sau96I GGNCC 3 cut(s) 20, 180, 700
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 3 cut(s) 119, 551, 731
ScrFI CCNGG 4 cut(s) 319, 709, 870, 928
SduI GDGCHC 2 cut(s) 838, 948
SfaNI GCATC 2 cut(s) 271, 363
SfcI CTRYAG 2 cut(s) 590, 905
SfuI TTCGAA 1 cut(s) 32
SinI GGWCC 2 cut(s) 180, 700
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 175, 249
SmoI CTYRAG 2 cut(s) 175, 249
SpeI ACTAGT 1 cut(s) 860
Sse9I AATT 7 cut(s) 289, 309, 411, 914, 956, 1113, 1226
SsiI CCGC 4 cut(s) 260, 464, 1076, 1157
SspMI CTAG 2 cut(s) 404, 861
StyD4I CCNGG 4 cut(s) 317, 707, 868, 926
StyI CCWWGG 3 cut(s) 192, 804, 1021
TaaI ACNGT 2 cut(s) 738, 827
TaiI ACGT 5 cut(s) 96, 588, 601, 669, 1243
TaqI TCGA 8 cut(s) 32, 199, 231, 788, 875, 953, 969, 1237
TasI AATT 7 cut(s) 289, 309, 411, 914, 956, 1113, 1226
TatI WGTACW 1 cut(s) 857
TfiI GAWTC 4 cut(s) 122, 322, 532, 766
Tru1I TTAA 5 cut(s) 147, 312, 444, 558, 1134
Tru9I TTAA 5 cut(s) 147, 312, 444, 558, 1134
TscAI CASTG 5 cut(s) 276, 426, 460, 832, 1069
TseFI GTSAC 2 cut(s) 646, 799
TseI GCWGC 5 cut(s) 458, 461, 476, 589, 904
Tsp45I GTSAC 2 cut(s) 646, 799
TspDTI ATGAA 9 cut(s) 126, 290, 462, 738, 907, 927, 1155, 1219, 1239
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 5 cut(s) 276, 426, 460, 832, 1069
VpaK11BI GGWCC 2 cut(s) 180, 700
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 3 cut(s) 914, 956, 1226
XmnI GAANNNNTTC 1 cut(s) 1230
XspI CTAG 2 cut(s) 404, 861
ZraI GACGTC 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.