Prupe.6G307800_v2.0.a1

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000145
Physical Location & Seq
Reverse (-)
27719472 .. 27721830
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G307800.1

Sequence Viewer

Length: 447 bp
ATGGATCAGTATTTCACCACATTGTCAACAACCCCGACTTCGGTCAGAAATGGTGTTTACAAGATAAGACATCTTCATTTACTTCTGTCAGTCAGAGTTCCTATTCATCAGGCACTAAGGATACTGAAAGGTCCATATGACATCATCCGCACAGGGCATCATGTTAATGGGATTTGCACAAAATACAGGATCACGAGGGATATATATCATAATCGGAAGAAACGTCTCATGAATATCCCCATAAAGGAACTTGAAGAACTGGTAGGCTGTGAAATTTATATGCGCCCAAAGAATGACTTGGTTGTCGCCATTGGGGGTTCAGATCGAGAATTGAAGCTAGTGAGGCAGATTGTGTCCGCCTGCATTGTACGCACAGTGCCTCATAGTGTCAAGGGATTGAGAGATTATCTTAAGATGTTCTTGGGTATTAAAAAGTTGAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

10.14

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AciI CCGC 2 cut(s) 148, 357
AclWI GGATC 2 cut(s) 12, 197
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 40, 244
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 2 cut(s) 254, 334
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 12, 197
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 193
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 338
BfrI CTTAAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 244
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 204
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 40, 244
BseNI ACTGG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 40, 244
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 4, 189, 322
BspACI CCGC 2 cut(s) 148, 357
BspHI TCATGA 1 cut(s) 228
BspPI GGATC 2 cut(s) 12, 197
BspTI CTTAAG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 264
BssMI GATC 3 cut(s) 4, 189, 322
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 7, 192, 325
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 4, 189, 322
BstMWI GCNNNNNNNGC 2 cut(s) 343, 369
BstPAI GACNNNNGTC 1 cut(s) 41
BsuI GTATCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 368
CviAII CATG 2 cut(s) 161, 229
CviJI RGCY 2 cut(s) 267, 337
CviKI_1 RGCY 2 cut(s) 267, 337
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 1 cut(s) 116
DpnI GATC 3 cut(s) 6, 191, 324
DpnII GATC 3 cut(s) 4, 189, 322
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 164, 232
FalI AAGNNNNNCTT 4 cut(s) 281, 313, 404, 436
FatI CATG 2 cut(s) 160, 228
FauNDI CATATG 1 cut(s) 136
FokI GGATG 1 cut(s) 131
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 164, 232
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 27, 58
Hpy188I TCNGA 4 cut(s) 47, 95, 216, 322
Hpy188III TCNNGA 3 cut(s) 193, 229, 326
Hpy8I GTNNAC 2 cut(s) 27, 58
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 177, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 369
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 164, 232
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 4, 189, 322
LpnPI CCDG 5 cut(s) 95, 138, 172, 245, 373
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 223
MalI GATC 3 cut(s) 6, 191, 324
MboI GATC 3 cut(s) 4, 189, 322
MboII GAAGA 3 cut(s) 65, 229, 266
MluCI AATT 2 cut(s) 273, 329
MnlI CCTC 3 cut(s) 189, 336, 390
MseI TTAA 3 cut(s) 165, 411, 429
MslI CAYNNNNRTG 1 cut(s) 165
MspCI CTTAAG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 343, 369
NdeI CATATG 1 cut(s) 136
NdeII GATC 3 cut(s) 4, 189, 322
NlaIII CATG 2 cut(s) 164, 232
PagI TCATGA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 165, 411, 429
Sau3AI GATC 3 cut(s) 4, 189, 322
Sau96I GGNCC 1 cut(s) 131
SetI ASST 3 cut(s) 133, 226, 339
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 2 cut(s) 273, 329
SsiI CCGC 2 cut(s) 148, 357
SspMI CTAG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 325
TaqII GACCGA 1 cut(s) 31
TasI AATT 2 cut(s) 273, 329
Tru1I TTAA 3 cut(s) 165, 411, 429
Tru9I TTAA 3 cut(s) 165, 411, 429
TscAI CASTG 1 cut(s) 381
TspDTI ATGAA 3 cut(s) 65, 95, 245
TspRI CASTG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 273
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.