Rmu_sc0005803.1_g000001

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005803.1
OG0000145
Physical Location & Seq
Forward (+)
1 .. 1611
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005803.1_g000001.1.cds

Sequence Viewer

Length: 372 bp
gcaatacgaacgctggattgcagttggcaacatgagatcatcaagattgggaatcaagaaggggggatttgcaacatatttgggatcagtaaggagcaatttcttgcacggaggaatcttatcgttggtgtcatgaagggactttttgaacttactggctgtggcgtttttcttaagggaaataccattgctgttattggtccactgcaaggaataaagacgataacaaagattgtggaagactgcatcgctcacaatgtgcctcctgcaccccgtgtgcggaggattaaaaagaagactcaactgatgaaggatgcgaggattaaaatgacaagtgaagtgatgaagagtctcgaggcttttcatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.67

Weight (kDa)

9.78

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 92
AdeI CACNNNGTG 2 cut(s) 259, 275
AfiI CCNNNNNNNGG 2 cut(s) 209, 279
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 200
BbsI GAAGAC 2 cut(s) 246, 302
BcoDI GTCTC 1 cut(s) 356
BfrI CTTAAG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 2 cut(s) 255, 304
BpiI GAAGAC 2 cut(s) 246, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 279
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 186
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 209, 279
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 209, 279
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 353
Bsp143I GATC 2 cut(s) 36, 84
BspACI CCGC 1 cut(s) 280
BspHI TCATGA 1 cut(s) 132
BspPI GGATC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 160
BssMI GATC 2 cut(s) 36, 84
Bst6I CTCTTC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 2 cut(s) 39, 87
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 36, 84
BstV2I GAAGAC 2 cut(s) 246, 302
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 3 cut(s) 32, 133, 365
CviJI RGCY 2 cut(s) 159, 359
CviKI_1 RGCY 2 cut(s) 159, 359
DpnI GATC 2 cut(s) 38, 86
DpnII GATC 2 cut(s) 36, 84
DraIII CACNNNGTG 2 cut(s) 259, 275
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 353
FaeI CATG 3 cut(s) 35, 136, 368
FaiI YATR 4 cut(s) 33, 77, 134, 366
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 31, 132, 364
FokI GGATG 1 cut(s) 326
Hin1II CATG 3 cut(s) 35, 136, 368
HinfI GANTC 4 cut(s) 52, 115, 298, 349
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 4 cut(s) 43, 56, 133, 353
Hpy8I GTNNAC 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 53, 130, 304
HpyCH4V TGCA 6 cut(s) 21, 72, 107, 208, 246, 269
Hsp92II CATG 3 cut(s) 35, 136, 368
Kzo9I GATC 2 cut(s) 36, 84
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 141, 279
LweI GCATC 2 cut(s) 255, 304
MalI GATC 2 cut(s) 38, 86
MboI GATC 2 cut(s) 36, 84
MboII GAAGA 3 cut(s) 251, 307, 358
MluCI AATT 1 cut(s) 98
MlyI GAGTC 2 cut(s) 292, 358
MnlI CCTC 5 cut(s) 105, 273, 276, 312, 349
MseI TTAA 3 cut(s) 174, 288, 324
MspCI CTTAAG 1 cut(s) 173
NdeII GATC 2 cut(s) 36, 84
NlaIII CATG 3 cut(s) 35, 136, 368
PaeR7I CTCGAG 1 cut(s) 353
PagI TCATGA 1 cut(s) 132
PfeI GAWTC 2 cut(s) 52, 115
PleI GAGTC 2 cut(s) 292, 357
PpsI GAGTC 2 cut(s) 292, 357
PspPI GGNCC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 174, 288, 324
Sau3AI GATC 2 cut(s) 36, 84
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 292, 358
SfaNI GCATC 2 cut(s) 255, 304
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 173, 353
SmoI CTYRAG 2 cut(s) 173, 353
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 280
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 98
TfiI GAWTC 2 cut(s) 52, 115
Tru1I TTAA 3 cut(s) 174, 288, 324
Tru9I TTAA 3 cut(s) 174, 288, 324
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 4 cut(s) 149, 323, 353, 359
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.