Rorug05G0015000

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000145
Physical Location & Seq
Forward (+)
983512 .. 985374
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0015000.1

Sequence Viewer

Length: 972 bp
ATGGCCTTCGTCTCTCAGCTAAACCAATTCCCCTGCAAGACTCTCTTAGTAACTCCACGTCACCCCCGCCCTTCAACTTTGGCGCCAAACTCCATCGGACTCGCCACCCGCAAACTGAAACTCTCCAACCCGGAATACCCACAAGCCATCCGACCCGCGACCCGGATCCGAGCCGTTGACGAGGACGAGTCGGCCCCGGAAACCTCGGAGGAGCCGTCCGACGTGGCAGCTGGAGCCGTGGCTGTGGCGGAGAAGCCGGCTGAGCCGGAGGAGATCTCGAAACTGAAGAAGGCTCTGGTGGACGCGTTTTACGGGACTGATCGTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTCGAGCTTATTACCCAATTGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTAAACGGGAAATGGATTCTGGCGTACACATCTTTTGCCGGTTTGTTTCCGTTATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGATGAGGTTTCGCAGACTATCGACTCCCAGAACTTCACAGTTGAAAACTCTGTTCGGTTTTCCGGGCCTTTGGCTACAACTTCTTTCAGCACCAATGCCACATTTGATGTCCGAAGTCCTAAGCGTGTTCAGCTCAAGTTTGAGGAAGGGGTGATTGGCACTCCACAGCTAACAGACTCGCTAGTGATACCAGAAGATGTTGAGTTTTTGGGACAGAAGATAGACCTTGCACCCTTCAAGGGTTTGCTCACCTCTGTCCAAGACACTGCTTCCTCGGTTGCAAAGTCCATCTCCAGCCAACCCCCGTTTAAGTTTTCGATCTCAAGTAGCAAGGCCGAATCGTGGTTGCTAACCACATACCTTGATCAAGAGCTTCGGATTTCGAGGGGAGACAATGGCAGTGTGTTTGTGCTCATCAAGGAAGCCAGCTCCCTTTTGACTCCTTCATCTATGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

34.9

Weight (kDa)

5.05

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 94 - 309 1.1e-79 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccII CGCG 2 cut(s) 158, 305
AciI CCGC 4 cut(s) 67, 109, 156, 248
AclWI GGATC 2 cut(s) 160, 173
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 5 cut(s) 162, 382, 400, 752, 855
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 75, 557, 751
AjiI CACGTC 2 cut(s) 59, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 7 cut(s) 19, 230, 367, 646, 682, 886, 942
AluI AGCT 7 cut(s) 19, 230, 367, 646, 682, 886, 942
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 3 cut(s) 16, 338, 897
AlwI GGATC 2 cut(s) 160, 173
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 7 cut(s) 3, 192, 351, 384, 414, 578, 846
ApeKI GCWGC 1 cut(s) 227
AspLEI GCGC 2 cut(s) 85, 335
AspS9I GGNCC 4 cut(s) 193, 351, 385, 578
AsuC2I CCSGG 6 cut(s) 131, 163, 197, 349, 350, 577
AsuHPI GGTGA 4 cut(s) 53, 517, 676, 754
AvaI CYCGRG 1 cut(s) 348
BamHI GGATCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 1 cut(s) 239
BccI CCATC 3 cut(s) 101, 155, 809
BceAI ACGGC 3 cut(s) 158, 199, 221
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 6 cut(s) 131, 163, 197, 349, 350, 577
BcoDI GTCTC 3 cut(s) 16, 338, 897
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 2 cut(s) 86, 336
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 228
BlpI GCTNAGC 2 cut(s) 261, 329
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 6 cut(s) 131, 163, 197, 349, 350, 577
BmeT110I CYCGRG 1 cut(s) 348
BmgBI CACGTC 2 cut(s) 59, 223
BmgT120I GGNCC 4 cut(s) 193, 351, 385, 578
BmiI GGNNCC 6 cut(s) 84, 167, 195, 213, 235, 405
BmrFI CCNGG 6 cut(s) 131, 163, 197, 349, 350, 577
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 2 cut(s) 252, 790
Bpu10I CCTNAGC 1 cut(s) 633
Bpu1102I GCTNAGC 2 cut(s) 261, 329
BpuEI CTTGAG 2 cut(s) 632, 820
BpuMI CCSGG 6 cut(s) 131, 163, 197, 349, 350, 577
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 6 cut(s) 195, 204, 237, 348, 411, 786
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 388, 418
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 382, 400, 752, 855
Bse118I RCCGGY 2 cut(s) 256, 464
BseDI CCNNGG 6 cut(s) 195, 204, 237, 348, 411, 786
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 5 cut(s) 162, 382, 400, 752, 855
BseMII CTCAG 3 cut(s) 29, 252, 343
BseRI GAGGAG 2 cut(s) 224, 284
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 2 cut(s) 158, 305
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 7 cut(s) 5, 194, 353, 386, 416, 580, 848
BshNI GGYRCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 927
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 9 cut(s) 131, 163, 197, 257, 266, 349, 401, 465, 576
BslFI GGGAC 2 cut(s) 328, 738
BslI CCNNNNNNNGG 5 cut(s) 162, 382, 400, 752, 855
BsmAI GTCTC 3 cut(s) 16, 338, 897
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 328, 738
BsnI GGCC 7 cut(s) 5, 194, 353, 386, 416, 580, 848
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 330, 927
Bsp143I GATC 5 cut(s) 165, 273, 319, 831, 877
Bsp1720I GCTNAGC 2 cut(s) 261, 329
BspACI CCGC 4 cut(s) 67, 109, 156, 248
BspANI GGCC 7 cut(s) 5, 194, 353, 386, 416, 580, 848
BspCNI CTCAG 3 cut(s) 28, 253, 342
BspFNI CGCG 2 cut(s) 158, 305
BspLI GGNNCC 6 cut(s) 84, 167, 195, 213, 235, 405
BspPI GGATC 2 cut(s) 160, 173
BspT107I GGYRCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 338
BsrFI RCCGGY 2 cut(s) 256, 464
BssAI RCCGGY 2 cut(s) 256, 464
BssECI CCNNGG 6 cut(s) 195, 204, 237, 348, 411, 786
BssMI GATC 5 cut(s) 165, 273, 319, 831, 877
BssNI GRCGYC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 258, 940
BstDEI CTNAG 6 cut(s) 15, 46, 261, 329, 633, 969
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 2 cut(s) 158, 305
BstH2I RGCGCY 2 cut(s) 86, 336
BstHHI GCGC 2 cut(s) 85, 335
BstKTI GATC 5 cut(s) 168, 276, 322, 834, 880
BstMAI GTCTC 3 cut(s) 16, 338, 897
BstMBI GATC 5 cut(s) 165, 273, 319, 831, 877
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 4 cut(s) 233, 262, 339, 643
BstSCI CCNGG 6 cut(s) 129, 161, 195, 347, 348, 575
BstUI CGCG 2 cut(s) 158, 305
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 165, 273
BstYI RGATCY 2 cut(s) 165, 273
BsuRI GGCC 7 cut(s) 5, 194, 353, 386, 416, 580, 848
BtgI CCRYGG 1 cut(s) 237
BtrI CACGTC 2 cut(s) 59, 223
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 2 cut(s) 777, 919
BtsIMutI CAGTG 2 cut(s) 777, 919
Cac8I GCNNGC 2 cut(s) 258, 940
CfoI GCGC 2 cut(s) 85, 335
Cfr10I RCCGGY 2 cut(s) 256, 464
Cfr13I GGNCC 4 cut(s) 193, 351, 385, 578
Cfr9I CCCGGG 1 cut(s) 348
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 451
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 6 cut(s) 15, 46, 261, 329, 633, 969
DinI GGCGCC 1 cut(s) 84
DpnI GATC 5 cut(s) 167, 275, 321, 833, 879
DpnII GATC 5 cut(s) 165, 273, 319, 831, 877
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 263
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 330
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 16
FaiI YATR 2 cut(s) 871, 965
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 2 cut(s) 328, 738
FauI CCCGC 3 cut(s) 74, 116, 163
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 695
GlaI GCGC 2 cut(s) 84, 334
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 252, 790
HaeII RGCGCY 2 cut(s) 86, 336
HaeIII GGCC 7 cut(s) 5, 194, 353, 386, 416, 580, 848
HapII CCGG 9 cut(s) 131, 163, 197, 257, 266, 349, 401, 465, 576
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 85, 335
Hin1I GRCGYC 1 cut(s) 83
Hin6I GCGC 2 cut(s) 83, 333
HinP1I GCGC 2 cut(s) 83, 333
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 9 cut(s) 40, 99, 188, 397, 442, 536, 689, 851, 952
HpaII CCGG 9 cut(s) 131, 163, 197, 257, 266, 349, 401, 465, 576
HphI GGTGA 4 cut(s) 53, 517, 676, 754
Hpy166II GTNNAC 3 cut(s) 178, 301, 453
Hpy188I TCNGA 8 cut(s) 98, 152, 170, 208, 220, 408, 626, 891
Hpy188III TCNNGA 3 cut(s) 277, 486, 881
Hpy8I GTNNAC 3 cut(s) 178, 301, 453
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 7 cut(s) 16, 81, 283, 502, 653, 757, 966
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 58, 222
HpyCH4V TGCA 3 cut(s) 36, 743, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 262, 339, 643
HpyF3I CTNAG 6 cut(s) 15, 46, 261, 329, 633, 969
HpySE526I ACGT 2 cut(s) 58, 222
Hsp92I GRCGYC 1 cut(s) 83
HspAI GCGC 2 cut(s) 83, 333
KasI GGCGCC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 5 cut(s) 165, 273, 319, 831, 877
LmnI GCTCC 4 cut(s) 211, 233, 409, 947
Lsp1109I GCAGC 1 cut(s) 239
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 58, 222
MaeIII GTNAC 2 cut(s) 49, 59
MalI GATC 5 cut(s) 167, 275, 321, 833, 879
MboI GATC 5 cut(s) 165, 273, 319, 831, 877
MboII GAAGA 4 cut(s) 298, 488, 719, 742
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 2 cut(s) 165, 273
MhlI GDGCHC 2 cut(s) 330, 927
MluCI AATT 2 cut(s) 26, 377
MluI ACGCGT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 7 cut(s) 34, 93, 197, 391, 530, 683, 946
MmeI TCCRAC 4 cut(s) 150, 175, 243, 431
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 9 cut(s) 131, 163, 197, 257, 266, 349, 401, 465, 576
MspR9I CCNGG 6 cut(s) 131, 163, 197, 349, 350, 577
MunI CAATTG 1 cut(s) 377
MvnI CGCG 2 cut(s) 158, 305
MwoI GCNNNNNNNGC 4 cut(s) 233, 262, 339, 643
NaeI GCCGGC 1 cut(s) 258
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 6 cut(s) 131, 163, 197, 349, 350, 577
NdeII GATC 5 cut(s) 165, 273, 319, 831, 877
NgoMIV GCCGGC 1 cut(s) 256
NlaIV GGNNCC 6 cut(s) 84, 167, 195, 213, 235, 405
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 442, 851
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 7 cut(s) 34, 93, 196, 391, 530, 683, 946
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 7 cut(s) 34, 93, 196, 391, 530, 683, 946
PspN4I GGNNCC 6 cut(s) 84, 167, 195, 213, 235, 405
PspPI GGNCC 4 cut(s) 193, 351, 385, 578
PsuI RGATCY 2 cut(s) 165, 273
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 5 cut(s) 165, 273, 319, 831, 877
Sau96I GGNCC 4 cut(s) 193, 351, 385, 578
SchI GAGTC 7 cut(s) 34, 93, 197, 391, 530, 683, 946
ScrFI CCNGG 6 cut(s) 131, 163, 197, 349, 350, 577
SduI GDGCHC 2 cut(s) 330, 927
SfoI GGCGCC 1 cut(s) 84
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 647, 835
SmoI CTYRAG 2 cut(s) 647, 835
Sse9I AATT 2 cut(s) 26, 377
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 4 cut(s) 67, 109, 156, 248
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 1 cut(s) 695
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 6 cut(s) 129, 161, 195, 347, 348, 575
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 61, 225
TaqI TCGA 5 cut(s) 278, 363, 534, 830, 896
TaqII GACCGA 1 cut(s) 425
TasI AATT 2 cut(s) 26, 377
TfiI GAWTC 2 cut(s) 442, 851
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 2 cut(s) 784, 919
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 948
TspGWI ACGGA 1 cut(s) 465
TspMI CCCGGG 1 cut(s) 348
TspRI CASTG 2 cut(s) 784, 919
XmaI CCCGGG 1 cut(s) 348
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.