Rh2BG049600

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000145
Physical Location & Seq
Reverse (-)
3503065 .. 3508453
5389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG049600.1

Sequence Viewer

Length: 579 bp
ATGACATTTTCGACTACCAGAGTGACCAAGGATCCAGATGTTATGGACAGTGTTGGTGCTCTTCTTGGAGTTTTGGGAAGTACTAGTGTTCCGGGGTCGAAGGTGATACAGATATTGGACAGCCGGCTGCAGTATGAATTCATCAAGACCGGGTTTGAAAAGGGTGGGCTCTGCTCGAAATTTGATGGGATCGAGAAGGAGCTTGCTAAGAACAAGCAAAGATTGAAGCGCAACGCAAAGAACCTTGGAGACTTGTTGGTATGTGATGTGTATATTGACAGAAGCAGTGTCGTTGTAGTGGGGAGTTGTGCGGCAGGGTTGAAGGAAATGAGGTCAATTGTGGAACGATGTCTGGTTAAAAATGAAGACCCTGCAACAGCGGTGAGGAGGCTAAGATCGTGTAATAAGAAACAGGGTAGTTTGAGATTATCTGATGAGAAGCAGGTCAGTTTGATGAAGAAGCTTGAGGGGAAGAGCGGTGGCGAAAATGCCGAGTCCACTGAGAAAGACGCCGTGCATGCCAGAACTAGGCTCACCGAGATCAGCAACATCGGTGCAGGTTTCGAACTTCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.91

Weight (kDa)

9.21

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 66 - 131 4.6e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 433, 548
AccBSI CCGCTC 1 cut(s) 477
AciI CCGC 3 cut(s) 311, 380, 477
AclWI GGATC 3 cut(s) 26, 39, 197
AcsI RAATTY 2 cut(s) 137, 179
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 3 cut(s) 158, 226, 322
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 2 cut(s) 202, 463
AluI AGCT 2 cut(s) 202, 463
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 3 cut(s) 26, 39, 197
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 137, 179
AspLEI GCGC 1 cut(s) 231
AsuC2I CCSGG 2 cut(s) 93, 151
AsuHPI GGTGA 3 cut(s) 115, 394, 526
AsuII TTCGAA 1 cut(s) 564
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 497
BcnI CCSGG 2 cut(s) 93, 151
BcoDI GTCTC 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 528
BfmI CTRYAG 1 cut(s) 128
BfuAI ACCTGC 2 cut(s) 433, 548
BisI GCNGC 2 cut(s) 128, 312
BlsI GCNGC 2 cut(s) 129, 313
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 93, 151
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 93, 151
BpiI GAAGAC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 93, 151
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 27, 92, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse118I RCCGGY 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 27, 92, 244
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 400
BseXI GCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 3 cut(s) 92, 124, 150
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 61, 171
Bsp143I GATC 4 cut(s) 31, 189, 395, 540
BspACI CCGC 3 cut(s) 311, 380, 477
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 132
BspMI ACCTGC 2 cut(s) 433, 548
BspPI GGATC 3 cut(s) 26, 39, 197
BspQI GCTCTTC 2 cut(s) 66, 467
BspT104I TTCGAA 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 27, 92, 244
BssMI GATC 4 cut(s) 31, 189, 395, 540
BssNI GRCGYC 1 cut(s) 510
BssT1I CCWWGG 2 cut(s) 27, 244
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 66, 467
BstACI GRCGYC 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 3 cut(s) 125, 204, 519
BstDEI CTNAG 3 cut(s) 207, 392, 501
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 4 cut(s) 34, 192, 398, 543
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 31, 189, 395, 540
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 91, 149
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 55, 292, 498
BveI ACCTGC 2 cut(s) 433, 548
Cac8I GCNNGC 3 cut(s) 125, 204, 519
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 123
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 81
CviAII CATG 2 cut(s) 518, 572
CviJI RGCY 8 cut(s) 123, 127, 169, 202, 391, 463, 532, 576
CviKI_1 RGCY 8 cut(s) 123, 127, 169, 202, 391, 463, 532, 576
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 3 cut(s) 207, 392, 501
DpnI GATC 4 cut(s) 33, 191, 397, 542
DpnII GATC 4 cut(s) 31, 189, 395, 540
Eam1104I CTCTTC 2 cut(s) 66, 467
EarI CTCTTC 2 cut(s) 66, 467
Eco130I CCWWGG 2 cut(s) 27, 244
Eco24I GRGCYC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 27, 244
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 27, 244
FaeI CATG 2 cut(s) 521, 575
FaiI YATR 6 cut(s) 44, 135, 262, 273, 519, 573
FatI CATG 2 cut(s) 517, 571
Fnu4HI GCNGC 2 cut(s) 128, 312
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 128, 312
FspBI CTAG 2 cut(s) 84, 528
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 128, 312
HapII CCGG 3 cut(s) 92, 124, 150
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 2 cut(s) 521, 575
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 1 cut(s) 494
HpaII CCGG 3 cut(s) 92, 124, 150
HphI GGTGA 3 cut(s) 115, 394, 526
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 3 cut(s) 35, 145, 193
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 3 cut(s) 94, 190, 316
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 4 cut(s) 130, 374, 517, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 3 cut(s) 207, 392, 501
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 2 cut(s) 521, 575
HspAI GCGC 1 cut(s) 229
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Kzo9I GATC 4 cut(s) 31, 189, 395, 540
LguI GCTCTTC 2 cut(s) 66, 467
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 2 cut(s) 84, 528
MaeIII GTNAC 1 cut(s) 22
MalI GATC 4 cut(s) 33, 191, 397, 542
MbiI CCGCTC 1 cut(s) 477
MboI GATC 4 cut(s) 31, 189, 395, 540
MboII GAAGA 4 cut(s) 53, 377, 469, 484
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 61, 171
MluCI AATT 3 cut(s) 137, 179, 336
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 4 cut(s) 324, 378, 381, 460
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 92, 124, 150
MspR9I CCNGG 2 cut(s) 93, 151
MunI CAATTG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 518
NaeI GCCGGC 1 cut(s) 125
NciI CCSGG 2 cut(s) 93, 151
NdeII GATC 4 cut(s) 31, 189, 395, 540
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 2 cut(s) 521, 575
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 564
PaeI GCATGC 1 cut(s) 521
PciSI GCTCTTC 2 cut(s) 66, 467
PdiI GCCGGC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 129, 313
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 66, 467
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 128, 312
Sau3AI GATC 4 cut(s) 31, 189, 395, 540
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 93, 151
SduI GDGCHC 2 cut(s) 61, 171
SetI ASST 7 cut(s) 105, 204, 246, 335, 447, 465, 562
SfcI CTRYAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 521
Sse9I AATT 3 cut(s) 137, 179, 336
SsiI CCGC 3 cut(s) 311, 380, 477
SspMI CTAG 2 cut(s) 84, 528
StyD4I CCNGG 2 cut(s) 91, 149
StyI CCWWGG 2 cut(s) 27, 244
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 5 cut(s) 11, 98, 176, 192, 564
TasI AATT 3 cut(s) 137, 179, 336
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 3 cut(s) 55, 292, 505
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 5 cut(s) 130, 150, 378, 470, 560
TspRI CASTG 3 cut(s) 55, 292, 505
XapI RAATTY 2 cut(s) 137, 179
XceI RCATGY 1 cut(s) 521
XspI CTAG 2 cut(s) 84, 528
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.