Rw7G008640

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000145
Physical Location & Seq
Reverse (-)
7898335 .. 7898853
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008640.1

Sequence Viewer

Length: 330 bp
ATGGAGATCTGCGCCGGTCACAAATCGGAGATGCTGTGCCCTAACTCCGACCACATGGAGTTGGAAAAGTCTGAAGTGACCTCCTTCACCGATAAATTGTTTTGTGCAGTACCCAAGTTGAAAGATGCTTGGCCACAGGTGGAATCGGCTTTACAAGAGCATGGAATTTCTTACACACTCAATCTGGCTGAGCTTTACATGATTGTCTCAACCACCCCAAGGACCGAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTATTGTTCCAACATATGTGGTACAATTCACACATCCTTTTATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

5.23

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 40 - 96 6.2e-12 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 111, 303
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmsI GCATC 2 cut(s) 21, 115
Bpu1102I GCTNAGC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 6, 229
Bsp1720I GCTNAGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 6, 229
BssT1I CCWWGG 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 9, 232
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 6, 229
BstSLI GKGCMC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 6, 229
BstYI RGATCY 2 cut(s) 6, 229
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 313
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 110, 302
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 3 cut(s) 55, 161, 199
CviJI RGCY 5 cut(s) 133, 149, 188, 193, 251
CviKI_1 RGCY 5 cut(s) 133, 149, 188, 193, 251
CviQI GTAC 2 cut(s) 110, 302
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 8, 231
DpnII GATC 2 cut(s) 6, 229
EaeI YGGCCR 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 58, 164, 202
FaiI YATR 6 cut(s) 56, 162, 200, 295, 297, 328
FatI CATG 3 cut(s) 54, 160, 198
FauNDI CATATG 1 cut(s) 295
FokI GGATG 1 cut(s) 300
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 58, 164, 202
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 28, 49, 73
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 3 cut(s) 58, 164, 202
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 6, 229
LpnPI CCDG 5 cut(s) 28, 122, 170, 232, 246
LweI GCATC 2 cut(s) 21, 115
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 17, 76
MalI GATC 2 cut(s) 8, 231
MboI GATC 2 cut(s) 6, 229
MboII GAAGA 1 cut(s) 239
MflI RGATCY 2 cut(s) 6, 229
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 3 cut(s) 95, 165, 305
MluNI TGGCCA 1 cut(s) 133
MmeI TCCRAC 3 cut(s) 42, 72, 314
MnlI CCTC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 133
MspI CCGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 295
NdeII GATC 2 cut(s) 6, 229
NlaIII CATG 3 cut(s) 58, 164, 202
NmuCI GTSAC 2 cut(s) 17, 76
PfeI GAWTC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 6, 229
RsaI GTAC 2 cut(s) 111, 303
RsaNI GTAC 2 cut(s) 110, 302
Sau3AI GATC 2 cut(s) 6, 229
Sau96I GGNCC 1 cut(s) 222
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 83, 141, 195
SfaNI GCATC 2 cut(s) 21, 115
SinI GGWCC 1 cut(s) 222
Sse9I AATT 3 cut(s) 95, 165, 305
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 218
TaqII GACCGA 1 cut(s) 239
TasI AATT 3 cut(s) 95, 165, 305
TfiI GAWTC 1 cut(s) 143
TseFI GTSAC 2 cut(s) 17, 76
Tsp45I GTSAC 2 cut(s) 17, 76
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 165
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.