FvH4_5g09160

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000145
Physical Location & Seq
Forward (+)
5290465 .. 5291192
728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09160.t1

Sequence Viewer

Length: 345 bp
ATGGAGATCAGCGCCGGTCACAAATCGGAGGAGCTGTGTCCTAACTCCGACCACATGGAGTTGGAAAAGTCTGGCGACACAATCGAAGTCACCTCCTTCACTGAGTCATTCTCCCGATTCCACATACCGAAGTTGACGAATGCTTGGCCGGAGGTGGAAGCGGCTTTACAAGAGCATGGAATTTCTTACAAACTCAATCTGGCTGAGCTTTACATGACTGTCTCAACCACTCCAATAACCAAAGATCCAGGTATCATTCACAGGGCTCGCGAGATTGGATTCACAATGCTAAAGTTTACACGGCCACCTTTACTCTCACTTGAACAATTTTTGACCCATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

5.43

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 33 - 92 1.2e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 2 cut(s) 146, 302
AcsI RAATTY 1 cut(s) 180
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 34, 208
AluI AGCT 2 cut(s) 34, 208
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 239
AoxI GGCC 2 cut(s) 146, 302
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu1102I GCTNAGC 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse118I RCCGGY 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 93, 195
BseRI GAGGAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 148, 304
BsiSI CCGG 2 cut(s) 15, 149
BsmAI GTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 2 cut(s) 148, 304
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 6, 244
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 270
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 148, 304
BspCNI CTCAG 2 cut(s) 94, 196
BspFNI CGCG 1 cut(s) 270
BspPI GGATC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 2 cut(s) 6, 244
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 102, 204
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 9, 247
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 2 cut(s) 6, 244
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 148, 304
BtsIMutI CAGTG 1 cut(s) 99
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
CviAII CATG 3 cut(s) 55, 176, 214
CviJI RGCY 7 cut(s) 34, 148, 164, 203, 208, 266, 304
CviKI_1 RGCY 7 cut(s) 34, 148, 164, 203, 208, 266, 304
DdeI CTNAG 2 cut(s) 102, 204
DpnI GATC 2 cut(s) 8, 246
DpnII GATC 2 cut(s) 6, 244
EaeI YGGCCR 2 cut(s) 146, 302
Eco24I GRGCYC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 268
FaeI CATG 3 cut(s) 58, 179, 217
FaiI YATR 4 cut(s) 56, 125, 177, 215
FatI CATG 3 cut(s) 54, 175, 213
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 343
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 148, 304
HapII CCGG 2 cut(s) 15, 149
HhaI GCGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 58, 179, 217
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 3 cut(s) 104, 117, 279
HpaII CCGG 2 cut(s) 15, 149
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 135, 297
Hpy188I TCNGA 2 cut(s) 28, 49
Hpy188III TCNNGA 2 cut(s) 114, 269
Hpy8I GTNNAC 2 cut(s) 135, 297
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 102, 204
Hsp92II CATG 3 cut(s) 58, 179, 217
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 6, 244
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 28, 57, 162, 185, 234, 247, 261
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 17, 88
MalI GATC 2 cut(s) 8, 246
MboI GATC 2 cut(s) 6, 244
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 180, 326
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 42, 72
MnlI CCTC 3 cut(s) 22, 103, 145
MspI CCGG 2 cut(s) 15, 149
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 270
NdeII GATC 2 cut(s) 6, 244
NlaIII CATG 3 cut(s) 58, 179, 217
NmuCI GTSAC 2 cut(s) 17, 88
NruI TCGCGA 1 cut(s) 270
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 117, 279
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 244
RruI TCGCGA 1 cut(s) 270
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 6, 244
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 36, 95, 156, 210, 253, 310
Sse9I AATT 2 cut(s) 180, 326
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 180, 326
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 117, 279
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 2 cut(s) 17, 88
Tsp45I GTSAC 2 cut(s) 17, 88
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 180
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.