Prupe.6G351700_v2.0.a1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000145
Physical Location & Seq
Reverse (-)
29968404 .. 29971211
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G351700.1

Sequence Viewer

Length: 618 bp
ATGGAGATGGACAAGTCTGGCCCCCCTGCATCGAACAAAGATAGCCCAATTGATTACAGCATTCTCCTTATGCCTTTTCGTAGACGCTCGACAACAGATTTGCAAGAAGCGTGGCCGGTGCTGGAATCATCTTTAGAAGAATATGGCATTTCATGTGAATTGGATATGGATCAGTTTTTCATAACATTCACAACAACCAGGGCTAAGGACCCATACGCTATTCTCAATTCTAGATATCTTATCCGACTTTTGGCAGCAGAAGTTCCTCCACGTCAGGCATTAAAAGTAACGTACGGAATGCCATGTTACCTTATCTACACTGGGTATCATTTAGGTGGGCTTTGCTCAAAATTTGGGATCAAGACGGATAAGTATGTTTCCCGGAAGAAACTGCTCACGACTCTCCCGATACAGGAACTTGAAAAACTGACAGGCTGTTCCATTTATCTCCGCCCAAATAATGACATGGTTGCTGCGATGGGTCCAATTAAAGGATTGAAGCTAGTTAGGAGTATTGTGGAAGACTGCATTGTTCATAATATGCCTCCGGCACATCGTGTAAAGAGGCTTGCAAATTATGTTCAAGCAATTAAGGGCGTTGAGGGGTTGAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

9.03

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 1 cut(s) 451
AclWI GGATC 2 cut(s) 177, 365
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 250, 412, 491
AgsI TTSAA 3 cut(s) 422, 499, 584
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
AlwI GGATC 2 cut(s) 177, 365
AoxI GGCC 2 cut(s) 19, 113
ApeKI GCWGC 2 cut(s) 254, 473
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspS9I GGNCC 3 cut(s) 20, 208, 482
AsuC2I CCSGG 1 cut(s) 382
AvaII GGWCC 2 cut(s) 208, 482
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 266, 460
BccI CCATC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 382
BfaI CTAG 2 cut(s) 231, 503
BisI GCNGC 2 cut(s) 255, 474
BlsI GCNGC 2 cut(s) 256, 475
Bme1390I CCNGG 2 cut(s) 199, 382
Bme18I GGWCC 2 cut(s) 208, 482
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 20, 208, 482
BmiI GGNNCC 3 cut(s) 22, 210, 483
BmrFI CCNGG 2 cut(s) 199, 382
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 412, 491
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 250, 412, 491
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 266, 460
BshFI GGCC 2 cut(s) 21, 115
BsiSI CCGG 3 cut(s) 116, 382, 548
BsiWI CGTACG 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 250, 412, 491
BsmI GAATGC 2 cut(s) 60, 303
BsnI GGCC 2 cut(s) 21, 115
Bsp143I GATC 2 cut(s) 169, 357
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 21, 115
BspLI GGNNCC 3 cut(s) 22, 210, 483
BspPI GGATC 2 cut(s) 177, 365
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 169, 357
Bst2UI CCWGG 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 2 cut(s) 172, 360
BstMBI GATC 2 cut(s) 169, 357
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 197, 380
BstV1I GCAGC 2 cut(s) 266, 460
BstV2I GAAGAC 1 cut(s) 528
BsuRI GGCC 2 cut(s) 21, 115
BtgZI GCGATG 1 cut(s) 491
BtrI CACGTC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 3 cut(s) 20, 208, 482
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviAII CATG 3 cut(s) 153, 303, 466
CviJI RGCY 8 cut(s) 21, 45, 115, 203, 340, 435, 502, 568
CviKI_1 RGCY 8 cut(s) 21, 45, 115, 203, 340, 435, 502, 568
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 171, 359
DpnII GATC 2 cut(s) 169, 357
DraIII CACNNNGTG 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 113
EciI GGCGGA 1 cut(s) 440
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 208, 482
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 236
FaeI CATG 3 cut(s) 156, 306, 469
FatI CATG 3 cut(s) 152, 302, 465
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 255, 474
Fsp4HI GCNGC 2 cut(s) 255, 474
FspBI CTAG 2 cut(s) 231, 503
GluI GCNGC 2 cut(s) 255, 474
HaeIII GGCC 2 cut(s) 21, 115
HapII CCGG 3 cut(s) 116, 382, 548
HgaI GACGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 156, 306, 469
HinfI GANTC 2 cut(s) 125, 400
HpaII CCGG 3 cut(s) 116, 382, 548
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 4 cut(s) 231, 361, 397, 406
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4IV ACGT 2 cut(s) 271, 290
HpyCH4V TGCA 4 cut(s) 29, 103, 528, 572
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 271, 290
Hsp92II CATG 3 cut(s) 156, 306, 469
Kzo9I GATC 2 cut(s) 169, 357
Lsp1109I GCAGC 2 cut(s) 266, 460
LweI GCATC 1 cut(s) 38
MaeI CTAG 2 cut(s) 231, 503
MaeII ACGT 2 cut(s) 271, 290
MaeIII GTNAC 2 cut(s) 286, 305
MalI GATC 2 cut(s) 171, 359
MboI GATC 2 cut(s) 169, 357
MboII GAAGA 3 cut(s) 149, 397, 533
MfeI CAATTG 1 cut(s) 48
MluCI AATT 7 cut(s) 48, 158, 226, 350, 486, 574, 588
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 4 cut(s) 276, 555, 558, 595
MseI TTAA 3 cut(s) 281, 489, 591
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 3 cut(s) 116, 382, 548
MspR9I CCNGG 2 cut(s) 199, 382
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 2 cut(s) 60, 303
MvaI CCWGG 1 cut(s) 199
NciI CCSGG 1 cut(s) 382
NdeII GATC 2 cut(s) 169, 357
NlaIII CATG 3 cut(s) 156, 306, 469
NlaIV GGNNCC 3 cut(s) 22, 210, 483
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PctI GAATGC 2 cut(s) 60, 303
PfeI GAWTC 1 cut(s) 125
Pfl23II CGTACG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 380
PkrI GCNGC 2 cut(s) 256, 475
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspLI CGTACG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 22, 210, 483
PspPI GGNCC 3 cut(s) 20, 208, 482
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 281, 489, 591
SatI GCNGC 2 cut(s) 255, 474
Sau3AI GATC 2 cut(s) 169, 357
Sau96I GGNCC 3 cut(s) 20, 208, 482
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 199, 382
SetI ASST 5 cut(s) 274, 293, 312, 337, 504
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 2 cut(s) 208, 482
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 7 cut(s) 48, 158, 226, 350, 486, 574, 588
SsiI CCGC 1 cut(s) 451
SspMI CTAG 2 cut(s) 231, 503
StyD4I CCNGG 2 cut(s) 197, 380
TaiI ACGT 2 cut(s) 274, 293
TaqI TCGA 2 cut(s) 32, 89
TasI AATT 7 cut(s) 48, 158, 226, 350, 486, 574, 588
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 281, 489, 591
Tru9I TTAA 3 cut(s) 281, 489, 591
TscAI CASTG 1 cut(s) 325
TseI GCWGC 2 cut(s) 254, 473
TspDTI ATGAA 3 cut(s) 141, 169, 524
TspGWI ACGGA 2 cut(s) 309, 380
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 208, 482
XapI RAATTY 1 cut(s) 350
XbaI TCTAGA 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 2 cut(s) 231, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.