Rorug04G0286000

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000145
Physical Location & Seq
Forward (+)
45956418 .. 45959378
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0286000.1

Sequence Viewer

Length: 1707 bp
ATGGCCGTCTCCGTCAACACCAAACCGTCGTTCAAGCAGTTTGACGTCGTTATGGACCACTCAGACCACCACTACTCGGACAGTAAATGTCGTTTCATCGACAGTACGGTCTATAAGAAGATCACGCGCGAGTGGAGAATTTTGGAGAAGGATCTCCCGGAAACCATATACGTGCGCACGTACGAGACACGTGTCGACCTCCTCAGGGCTGTGATTGTCGGAGCAGAAGGCACACCCTACGAGGGCGGACTCTTCTTCTTCGACATCAAGTTCCCGGATAACTATCCGAACGAACCACCAAAGGTTCATTACCGCTCGCACGGATTGCGGCTTAACCCTAATATGTACGAGACTGGACATGTTTGCTTGAGCCTACTCAACACGTGGTCTGGCCCGGGGTGGGACTCATCCCAATCCACCATCCTCCAAGTTTTGGTGTCGATCCAAGCGCTTGTTCTCAACGACAAGCCTTACTTTAATGAACCGGGTACTGGGTTTTTAAACCGGTGGTTTGGCATGAAGGATGAGTCCCAAAAATACAGTGGGGACGCGTTTATTTCAACATGCAAGTCAACGTTGTATTTGCTCCGAAATCCACCCAAGAATTTTGAGGCTTTCACTGCCGACCATTTTCGTGGAAGAGCGAGTGGGATTCTGAGAGCGTGCAAGGCTTATGCGAAAGTCGGCTATTACAGCAAGGAGACTGAGGCAAGCCCGTCTTCGGTTTACCTTATGAAACATTCCAGGAAGTTCAAGGAGTCGATGGAGCAGTTGTACCCACAGCTGGTTGAGGCTTTTAAAAAGAATGAGGCTTCTCGTAAGAACAATCCGGTCAAGGAATTTACTTCTCGGAAAAACAATCCAGTCAAGGAATTGATGGCAGAGAGGAGTTCGACGAAGTTTGCAGATCAAGTGAAGAAGAAAGCTGAGCCGGCCTTTACTCCGGGCCGGTTATTGTCCGCTGCATTTTTGGTCTCTGTAGCTTTTGTGTTAGTAGTATGTAGAAATTTCGGACTTTATGATCAACTAAACAACAGTTTTCTTAGTCTTATTAGAATGCATTCAGGTCTGATTGATAGACTCAAGCAGATGTGTACTTATATTCGAAATCTCATTCTCGTCAACCGCGAACCGGACGGAATCGCCTTCGTCAGAATCAACCGTCCCAAGTCGCTTAACCCACTGACCAAGGCTATGATCATGGATCTCGCCAGGGCCATCAAGTCCCTGAATCAAGACGATTCGGTCCGGGTCATTATTCTGTCGGGTACGGGTCGGGCCTTCTGCTCGGGCGTCGATCTCACCGCGGCCGAGGACGTTTTCAAAGGCGACGTCAAGGACATCGAGACCGCGGGGGCCCAAATAGAGCTATGCAAAAACCCATCATCGCCGCCATCCACGGCTTCGCGGTCGCCAGCTGATTCGAAATCGCGATCGCTTGAGACGTCATCGTCGAGGCTAAAGGACCGAAGTTTATCGATGCTCATGCCACGGGCCAACAAAGCGCGTGAGGTGTCACTGACGGCGACGCCGCTAACGGTGACGCCGCTAACGGCGGAGGTGGGTGAGAGGTTGGGGTTAGTGAACCATGTTGTGGAGGAGAGTGAGTTGTTGAAGAAAGCGCGGGAAATAGCAGAGGCGATTGTGAAGAATAACCAGGACCTGGTGGTGAGGTACAAGGCTATTATTAATGATGGGCTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

568

Amino Acids

63.9

Weight (kDa)

9.35

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 41 - 154 1.6e-24 Ubiquitin-conjugating enzyme
ECH_1 PF00378 378 - 438 8.2e-14 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 382 - 440 9.5e-13 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 107, 1244, 1450
AatII GACGTC 3 cut(s) 48, 1335, 1448
Acc16I TGCGCA 1 cut(s) 176
AccB7I CCANNNNNTGG 3 cut(s) 433, 1594, 1663
AccBSI CCGCTC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 195
AclI AACGTT 1 cut(s) 575
AclWI GGATC 3 cut(s) 159, 436, 1212
AcoI YGGCCR 2 cut(s) 3, 1308
AcsI RAATTY 4 cut(s) 138, 604, 839, 1006
AcvI CACGTG 2 cut(s) 191, 384
AcyI GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
AfaI GTAC 8 cut(s) 106, 182, 347, 490, 776, 1096, 1270, 1676
AfeI AGCGCT 1 cut(s) 450
AflII CTTAAG 1 cut(s) 1700
AflIII ACRYGT 5 cut(s) 188, 190, 358, 381, 549
AgeI ACCGGT 1 cut(s) 504
AgsI TTSAA 5 cut(s) 34, 561, 754, 1324, 1615
AjnI CCWGG 4 cut(s) 743, 1211, 1656, 1662
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 438, 470
AluBI AGCT 5 cut(s) 784, 926, 983, 1369, 1418
AluI AGCT 5 cut(s) 784, 926, 983, 1369, 1418
Alw26I GTCTC 7 cut(s) 13, 179, 344, 695, 979, 1340, 1436
AlwI GGATC 3 cut(s) 159, 436, 1212
AlwNI CAGNNNCTG 1 cut(s) 1663
Ama87I CYCGRG 2 cut(s) 394, 1288
Aor51HI AGCGCT 1 cut(s) 450
AoxI GGCC 9 cut(s) 3, 391, 933, 946, 1215, 1278, 1308, 1356, 1494
ApaI GGGCCC 1 cut(s) 1360
ApeKI GCWGC 1 cut(s) 962
ApoI RAATTY 4 cut(s) 138, 604, 839, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 1317, 1349
AseI ATTAAT 1 cut(s) 1689
AsiGI ACCGGT 1 cut(s) 504
AsiSI GCGATCGC 1 cut(s) 1436
Asp700I GAANNNNTTC 1 cut(s) 1060
AspLEI GCGC 5 cut(s) 129, 177, 451, 1507, 1624
AsuC2I CCSGG 7 cut(s) 158, 275, 395, 396, 486, 945, 1250
AsuHPI GGTGA 4 cut(s) 1294, 1552, 1577, 1681
AsuII TTCGAA 2 cut(s) 1105, 1424
AvaI CYCGRG 2 cut(s) 394, 1288
AvaII GGWCC 4 cut(s) 55, 1246, 1465, 1660
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 1360
BanII GRGCYC 1 cut(s) 1360
BbrPI CACGTG 2 cut(s) 191, 384
BbsI GAAGAC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 949
BccI CCATC 7 cut(s) 428, 757, 871, 1226, 1390, 1402, 1688
BceAI ACGGC 3 cut(s) 1416, 1539, 1569
BcgI CGANNNNNNTGC 2 cut(s) 1468, 1502
BciT130I CCWGG 4 cut(s) 745, 1213, 1658, 1664
BclI TGATCA 2 cut(s) 1021, 1197
BcnI CCSGG 7 cut(s) 158, 275, 395, 396, 486, 945, 1250
BcoDI GTCTC 7 cut(s) 13, 179, 344, 695, 979, 1340, 1436
BfmI CTRYAG 1 cut(s) 978
BfoI RGCGCY 1 cut(s) 452
BfrI CTTAAG 1 cut(s) 1700
BisI GCNGC 6 cut(s) 329, 963, 1308, 1391, 1532, 1547
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 6 cut(s) 330, 964, 1309, 1392, 1533, 1548
Bme18I GGWCC 4 cut(s) 55, 1246, 1465, 1660
BmeT110I CYCGRG 2 cut(s) 394, 1288
BmiI GGNNCC 2 cut(s) 1357, 1358
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 1470
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 927
Bpu14I TTCGAA 2 cut(s) 1105, 1424
BpuEI CTTGAG 3 cut(s) 388, 1067, 1460
BpuMI CCSGG 7 cut(s) 158, 275, 395, 396, 486, 945, 1250
Bsa29I ATCGAT 1 cut(s) 1478
BsaAI YACGTR 4 cut(s) 172, 180, 191, 384
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
BsaI GGTCTC 2 cut(s) 979, 1340
BsaJI CCNNGG 9 cut(s) 394, 395, 1188, 1212, 1305, 1311, 1350, 1398, 1490
BsaWI WCCGGW 3 cut(s) 504, 829, 1132
BsaXI ACNNNNNCTCC 4 cut(s) 758, 788, 1592, 1622
Bse118I RCCGGY 3 cut(s) 504, 931, 948
Bse1I ACTGG 3 cut(s) 358, 496, 863
Bse21I CCTNAGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 4 cut(s) 745, 1213, 1658, 1664
BseCI ATCGAT 1 cut(s) 1478
BseDI CCNNGG 9 cut(s) 394, 395, 1188, 1212, 1305, 1311, 1350, 1398, 1490
BseGI GGATG 4 cut(s) 407, 420, 529, 1394
BseJI GATNNNNATC 1 cut(s) 282
BseMII CTCAG 5 cut(s) 75, 217, 647, 696, 918
BseNI ACTGG 3 cut(s) 358, 496, 863
BseRI GAGGAG 3 cut(s) 191, 901, 1613
BseSI GKGCMC 1 cut(s) 1360
BseX3I CGGCCG 1 cut(s) 1308
BseXI GCAGC 1 cut(s) 949
Bsh1285I CGRYCG 3 cut(s) 1311, 1412, 1436
BshFI GGCC 9 cut(s) 5, 393, 935, 948, 1217, 1280, 1310, 1358, 1496
BshTI ACCGGT 1 cut(s) 504
BshVI ATCGAT 1 cut(s) 1478
BsiEI CGRYCG 3 cut(s) 1311, 1412, 1436
BsiHKCI CYCGRG 2 cut(s) 394, 1288
BsiWI CGTACG 1 cut(s) 180
BslFI GGGAC 5 cut(s) 416, 514, 560, 1149, 1210
BsmAI GTCTC 7 cut(s) 13, 179, 344, 695, 979, 1340, 1436
BsmBI CGTCTC 2 cut(s) 13, 1436
BsmFI GGGAC 5 cut(s) 416, 514, 560, 1149, 1210
BsmI GAATGC 2 cut(s) 1060, 1062
BsnI GGCC 9 cut(s) 5, 393, 935, 948, 1217, 1280, 1310, 1358, 1496
Bso31I GGTCTC 2 cut(s) 979, 1340
BsoBI CYCGRG 2 cut(s) 394, 1288
Bsp119I TTCGAA 2 cut(s) 1105, 1424
Bsp120I GGGCCC 1 cut(s) 1356
Bsp1286I GDGCHC 1 cut(s) 1360
Bsp143I GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
Bsp1720I GCTNAGC 1 cut(s) 927
Bsp68I TCGCGA 1 cut(s) 1432
BspANI GGCC 9 cut(s) 5, 393, 935, 948, 1217, 1280, 1310, 1358, 1496
BspCNI CTCAG 5 cut(s) 74, 216, 648, 697, 919
BspDI ATCGAT 1 cut(s) 1478
BspLI GGNNCC 2 cut(s) 1357, 1358
BspPI GGATC 3 cut(s) 159, 436, 1212
BspQI GCTCTTC 1 cut(s) 634
BspT104I TTCGAA 2 cut(s) 1105, 1424
BspTI CTTAAG 1 cut(s) 1700
BspTNI GGTCTC 2 cut(s) 979, 1340
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 3 cut(s) 504, 931, 948
BsrI ACTGG 3 cut(s) 358, 496, 863
BssAI RCCGGY 3 cut(s) 504, 931, 948
BssECI CCNNGG 9 cut(s) 394, 395, 1188, 1212, 1305, 1311, 1350, 1398, 1490
BssMI GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
BssNI GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
BssT1I CCWWGG 1 cut(s) 1188
Bst2UI CCWGG 4 cut(s) 745, 1213, 1658, 1664
Bst4CI ACNGT 8 cut(s) 27, 83, 104, 109, 542, 1037, 1163, 1540
Bst6I CTCTTC 2 cut(s) 257, 634
BstACI GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
BstAFI CTTAAG 1 cut(s) 1700
BstAPI GCANNNNNTGC 1 cut(s) 325
BstBAI YACGTR 4 cut(s) 172, 180, 191, 384
BstBI TTCGAA 2 cut(s) 1105, 1424
BstC8I GCNNGC 5 cut(s) 317, 664, 712, 933, 1416
BstDEI CTNAG 6 cut(s) 61, 203, 656, 705, 927, 1043
BstDSI CCRYGG 4 cut(s) 1305, 1350, 1398, 1490
BstF5I GGATG 4 cut(s) 407, 420, 529, 1394
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 5 cut(s) 129, 177, 451, 1507, 1624
BstKTI GATC 9 cut(s) 123, 154, 444, 910, 1024, 1200, 1207, 1300, 1436
BstMAI GTCTC 7 cut(s) 13, 179, 344, 695, 979, 1340, 1436
BstMBI GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
BstMCI CGRYCG 3 cut(s) 1311, 1412, 1436
BstMWI GCNNNNNNNGC 6 cut(s) 325, 620, 668, 693, 932, 1502
BstNI CCWGG 4 cut(s) 745, 1213, 1658, 1664
BstNSI RCATGY 2 cut(s) 362, 567
BstPAI GACNNNNGTC 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 978
BstSLI GKGCMC 1 cut(s) 1360
BstV1I GCAGC 1 cut(s) 949
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 2 cut(s) 151, 1204
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 2 cut(s) 151, 1204
BstZI CGGCCG 1 cut(s) 1308
Bsu15I ATCGAT 1 cut(s) 1478
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 9 cut(s) 5, 393, 935, 948, 1217, 1280, 1310, 1358, 1496
BsuTUI ATCGAT 1 cut(s) 1478
BtgI CCRYGG 4 cut(s) 1305, 1350, 1398, 1490
BtgZI GCGATG 1 cut(s) 1371
BtsCI GGATG 4 cut(s) 407, 420, 529, 1394
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 4 cut(s) 547, 618, 1181, 1517
BtuMI TCGCGA 1 cut(s) 1432
Cac8I GCNNGC 5 cut(s) 317, 664, 712, 933, 1416
CaiI CAGNNNCTG 1 cut(s) 1663
CfoI GCGC 5 cut(s) 129, 177, 451, 1507, 1624
Cfr10I RCCGGY 3 cut(s) 504, 931, 948
Cfr42I CCGCGG 2 cut(s) 1308, 1353
Cfr9I CCCGGG 1 cut(s) 394
ClaI ATCGAT 1 cut(s) 1478
CpoI CGGWCCG 1 cut(s) 1246
CseI GACGC 4 cut(s) 557, 1282, 1537, 1552
CsiI ACCWGGT 1 cut(s) 1662
Csp6I GTAC 8 cut(s) 105, 181, 346, 489, 775, 1095, 1269, 1675
CspAI ACCGGT 1 cut(s) 504
CspI CGGWCCG 1 cut(s) 1246
CviAII CATG 6 cut(s) 359, 517, 564, 1201, 1486, 1589
CviQI GTAC 8 cut(s) 105, 181, 346, 489, 775, 1095, 1269, 1675
DdeI CTNAG 6 cut(s) 61, 203, 656, 705, 927, 1043
DpnI GATC 9 cut(s) 122, 153, 443, 909, 1023, 1199, 1206, 1299, 1435
DpnII GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
DraI TTTAAA 2 cut(s) 501, 799
DrdI GACNNNNNNGTC 3 cut(s) 107, 1244, 1450
DseDI GACNNNNNNGTC 3 cut(s) 107, 1244, 1450
EaeI YGGCCR 2 cut(s) 3, 1308
EagI CGGCCG 1 cut(s) 1308
Eam1104I CTCTTC 2 cut(s) 257, 634
EarI CTCTTC 2 cut(s) 257, 634
EciI GGCGGA 2 cut(s) 261, 1571
EclXI CGGCCG 1 cut(s) 1308
Eco130I CCWWGG 1 cut(s) 1188
Eco24I GRGCYC 1 cut(s) 1360
Eco31I GGTCTC 2 cut(s) 979, 1340
Eco47I GGWCC 4 cut(s) 55, 1246, 1465, 1660
Eco47III AGCGCT 1 cut(s) 450
Eco52I CGGCCG 1 cut(s) 1308
Eco72I CACGTG 2 cut(s) 191, 384
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 2 cut(s) 394, 1288
EcoO109I RGGNCCY 2 cut(s) 1356, 1660
EcoRII CCWGG 4 cut(s) 743, 1211, 1656, 1662
EcoT14I CCWWGG 1 cut(s) 1188
EcoT22I ATGCAT 1 cut(s) 1062
EcoT38I GRGCYC 1 cut(s) 1360
ErhI CCWWGG 1 cut(s) 1188
Esp3I CGTCTC 2 cut(s) 13, 1436
FaeI CATG 6 cut(s) 362, 520, 567, 1204, 1489, 1592
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 703, 735
FaqI GGGAC 5 cut(s) 416, 514, 560, 1149, 1210
FatI CATG 6 cut(s) 358, 516, 563, 1200, 1485, 1588
FauI CCCGC 2 cut(s) 1345, 1617
FbaI TGATCA 2 cut(s) 1021, 1197
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 329, 963, 1308, 1391, 1532, 1547
FokI GGATG 4 cut(s) 394, 407, 536, 1381
FriOI GRGCYC 1 cut(s) 1360
Fsp4HI GCNGC 6 cut(s) 329, 963, 1308, 1391, 1532, 1547
FspAI RTGCGCAY 1 cut(s) 176
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 5 cut(s) 128, 176, 450, 1506, 1623
GluI GCNGC 6 cut(s) 329, 963, 1308, 1391, 1532, 1547
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 9 cut(s) 5, 393, 935, 948, 1217, 1280, 1310, 1358, 1496
HgaI GACGC 4 cut(s) 557, 1282, 1537, 1552
HhaI GCGC 5 cut(s) 129, 177, 451, 1507, 1624
Hin1I GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
Hin1II CATG 6 cut(s) 362, 520, 567, 1204, 1489, 1592
Hin6I GCGC 5 cut(s) 127, 175, 449, 1505, 1622
HinP1I GCGC 5 cut(s) 127, 175, 449, 1505, 1622
HincII GTYRAC 4 cut(s) 16, 196, 573, 1123
HindII GTYRAC 4 cut(s) 16, 196, 573, 1123
HphI GGTGA 4 cut(s) 1294, 1552, 1577, 1681
Hpy166II GTNNAC 7 cut(s) 16, 196, 573, 727, 1095, 1123, 1585
Hpy188III TCNNGA 3 cut(s) 1235, 1345, 1431
Hpy8I GTNNAC 7 cut(s) 16, 196, 573, 727, 1095, 1123, 1585
Hpy99I CGWCG 7 cut(s) 31, 50, 898, 1298, 1334, 1456, 1531
HpyAV CCTTC 5 cut(s) 142, 221, 514, 1156, 1291
HpyCH4III ACNGT 8 cut(s) 27, 83, 104, 109, 542, 1037, 1163, 1540
HpyCH4IV ACGT 9 cut(s) 45, 171, 179, 190, 383, 575, 1317, 1332, 1445
HpyCH4V TGCA 6 cut(s) 567, 666, 905, 965, 1060, 1374
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 620, 668, 693, 932, 1502
HpyF3I CTNAG 6 cut(s) 61, 203, 656, 705, 927, 1043
HpySE526I ACGT 9 cut(s) 45, 171, 179, 190, 383, 575, 1317, 1332, 1445
Hsp92I GRCGYC 6 cut(s) 45, 1293, 1332, 1445, 1529, 1544
Hsp92II CATG 6 cut(s) 362, 520, 567, 1204, 1489, 1592
HspAI GCGC 5 cut(s) 127, 175, 449, 1505, 1622
KroI GCCGGC 1 cut(s) 931
KroNI GCCGGC 1 cut(s) 933
Ksp22I TGATCA 2 cut(s) 1021, 1197
KspI CCGCGG 2 cut(s) 1308, 1353
Kzo9I GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 3 cut(s) 221, 591, 766
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 1 cut(s) 1470
MabI ACCWGGT 1 cut(s) 1662
MaeII ACGT 9 cut(s) 45, 171, 179, 190, 383, 575, 1317, 1332, 1445
MaeIII GTNAC 2 cut(s) 1515, 1540
MalI GATC 9 cut(s) 122, 153, 443, 909, 1023, 1199, 1206, 1299, 1435
MbiI CCGCTC 1 cut(s) 315
MboI GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
MflI RGATCY 2 cut(s) 151, 1204
MhlI GDGCHC 1 cut(s) 1360
MluCI AATT 5 cut(s) 138, 604, 839, 872, 1006
MluI ACGCGT 1 cut(s) 549
MlyI GAGTC 5 cut(s) 243, 398, 536, 767, 1074
MmeI TCCRAC 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 1062
MroNI GCCGGC 1 cut(s) 931
MroXI GAANNNNTTC 1 cut(s) 1060
MseI TTAA 7 cut(s) 333, 477, 500, 798, 1176, 1689, 1701
MslI CAYNNNNRTG 2 cut(s) 170, 633
MspA1I CMGCKG 5 cut(s) 784, 962, 1307, 1352, 1418
MspCI CTTAAG 1 cut(s) 1700
Mva1269I GAATGC 2 cut(s) 1060, 1062
MvaI CCWGG 4 cut(s) 745, 1213, 1658, 1664
MwoI GCNNNNNNNGC 6 cut(s) 325, 620, 668, 693, 932, 1502
NaeI GCCGGC 1 cut(s) 933
NciI CCSGG 7 cut(s) 158, 275, 395, 396, 486, 945, 1250
NdeII GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
NgoMIV GCCGGC 1 cut(s) 931
NlaIII CATG 6 cut(s) 362, 520, 567, 1204, 1489, 1592
NlaIV GGNNCC 2 cut(s) 1357, 1358
NmeAIII GCCGAG 1 cut(s) 1336
NmuCI GTSAC 2 cut(s) 1515, 1540
NruI TCGCGA 1 cut(s) 1432
NsbI TGCGCA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 2 cut(s) 362, 567
NspV TTCGAA 2 cut(s) 1105, 1424
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 3 cut(s) 1125, 1442, 1451
PctI GAATGC 2 cut(s) 1060, 1062
PdiI GCCGGC 1 cut(s) 933
PdmI GAANNNNTTC 1 cut(s) 1060
PfeI GAWTC 6 cut(s) 652, 1140, 1155, 1231, 1241, 1421
Pfl23II CGTACG 1 cut(s) 180
PflMI CCANNNNNTGG 3 cut(s) 433, 1594, 1663
PfoI TCCNGGA 3 cut(s) 156, 273, 743
PinAI ACCGGT 1 cut(s) 504
PkrI GCNGC 6 cut(s) 330, 964, 1309, 1392, 1533, 1548
Ple19I CGATCG 1 cut(s) 1436
PleI GAGTC 5 cut(s) 243, 398, 535, 766, 1074
PmaCI CACGTG 2 cut(s) 191, 384
PmlI CACGTG 2 cut(s) 191, 384
PpsI GAGTC 5 cut(s) 243, 398, 535, 766, 1074
Ppu21I YACGTR 4 cut(s) 172, 180, 191, 384
PpuMI RGGWCCY 1 cut(s) 1660
PscI ACATGT 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 1689
Psp1406I AACGTT 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 1660
Psp6I CCWGG 4 cut(s) 743, 1211, 1656, 1662
PspCI CACGTG 2 cut(s) 191, 384
PspGI CCWGG 4 cut(s) 743, 1211, 1656, 1662
PspLI CGTACG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 1357, 1358
PspOMI GGGCCC 1 cut(s) 1356
PspPPI RGGWCCY 1 cut(s) 1660
PstNI CAGNNNCTG 1 cut(s) 1663
PsuI RGATCY 2 cut(s) 151, 1204
PvuI CGATCG 1 cut(s) 1436
PvuII CAGCTG 2 cut(s) 784, 1418
RgaI GCGATCGC 1 cut(s) 1436
RruI TCGCGA 1 cut(s) 1432
RsaI GTAC 8 cut(s) 106, 182, 347, 490, 776, 1096, 1270, 1676
RsaNI GTAC 8 cut(s) 105, 181, 346, 489, 775, 1095, 1269, 1675
RseI CAYNNNNRTG 2 cut(s) 170, 633
Rsr2I CGGWCCG 1 cut(s) 1246
RsrII CGGWCCG 1 cut(s) 1246
SacII CCGCGG 2 cut(s) 1308, 1353
SalI GTCGAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 7 cut(s) 333, 477, 500, 798, 1176, 1689, 1701
SatI GCNGC 6 cut(s) 329, 963, 1308, 1391, 1532, 1547
Sau3AI GATC 9 cut(s) 120, 151, 441, 907, 1021, 1197, 1204, 1297, 1433
SchI GAGTC 5 cut(s) 243, 398, 536, 767, 1074
SduI GDGCHC 1 cut(s) 1360
SexAI ACCWGGT 1 cut(s) 1662
SfaAI GCGATCGC 1 cut(s) 1436
SfaNI GCATC 1 cut(s) 1470
SfcI CTRYAG 1 cut(s) 978
Sfr303I CCGCGG 2 cut(s) 1308, 1353
SfuI TTCGAA 2 cut(s) 1105, 1424
SgfI GCGATCGC 1 cut(s) 1436
SgrBI CCGCGG 2 cut(s) 1308, 1353
SinI GGWCC 4 cut(s) 55, 1246, 1465, 1660
SmaI CCCGGG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 170, 633
SmlI CTYRAG 4 cut(s) 367, 1082, 1439, 1700
SmoI CTYRAG 4 cut(s) 367, 1082, 1439, 1700
Sse9I AATT 5 cut(s) 138, 604, 839, 872, 1006
StyI CCWWGG 1 cut(s) 1188
TaaI ACNGT 8 cut(s) 27, 83, 104, 109, 542, 1037, 1163, 1540
TaiI ACGT 9 cut(s) 48, 174, 182, 193, 386, 578, 1320, 1335, 1448
TaqII GACCGA 2 cut(s) 1234, 1482
TasI AATT 5 cut(s) 138, 604, 839, 872, 1006
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 5 cut(s) 331, 1310, 1393, 1534, 1549
TfiI GAWTC 6 cut(s) 652, 1140, 1155, 1231, 1241, 1421
Tru1I TTAA 7 cut(s) 333, 477, 500, 798, 1176, 1689, 1701
Tru9I TTAA 7 cut(s) 333, 477, 500, 798, 1176, 1689, 1701
TscAI CASTG 4 cut(s) 547, 625, 1188, 1524
TseFI GTSAC 2 cut(s) 1515, 1540
TseI GCWGC 1 cut(s) 962
Tsp45I GTSAC 2 cut(s) 1515, 1540
TspDTI ATGAA 5 cut(s) 85, 296, 495, 533, 749
TspGWI ACGGA 2 cut(s) 336, 1152
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 4 cut(s) 547, 625, 1188, 1524
Van91I CCANNNNNTGG 3 cut(s) 433, 1594, 1663
Vha464I CTTAAG 1 cut(s) 1700
VpaK11BI GGWCC 4 cut(s) 55, 1246, 1465, 1660
VspI ATTAAT 1 cut(s) 1689
XapI RAATTY 4 cut(s) 138, 604, 839, 1006
XceI RCATGY 2 cut(s) 362, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmaI CCCGGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 1060
ZraI GACGTC 3 cut(s) 46, 1333, 1446
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.