pycom12g17860

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000145
Physical Location & Seq
Forward (+)
20209932 .. 20210649
718 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17860.1

Sequence Viewer

Length: 381 bp
ATGAACGGTCGCAGGCAACATATCTTCATGAGGATTGGGCATCAAGAAGGTGGTCTGTGCTCAAGGTTTGGGATCAAGGAGGACGAGCACAAACAACGATTGGTGAAATTTATGGCCGCTGATAAGGATCTTTCTGACTTGACAGACACGACTGTTCGTCACGTTGGTCACGCTGTTCTTCTGTTGGGGCGAGCTGATGTTGTTGGTATCTCGGGGCGAGATGATGGGTTGGAGATGGCGAGGACTCTGGTTGAAGGCTACATTGTTCATGGCAGGGAGCATGCACGTGTGACGGAACACCGGGAAATTAAGAAGTCCAGAAAAAGAAAGTATAGAGAAGTGATGTATTGCCTGAGGGAAAAAACAGGTAACTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.54

Weight (kDa)

9.74

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclWI GGATC 2 cut(s) 80, 135
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 107
AcvI CACGTG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 156
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 2 cut(s) 62, 90
AlwI GGATC 2 cut(s) 80, 135
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 62, 90
BccI CCATC 2 cut(s) 218, 229
BcnI CCSGG 1 cut(s) 302
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 302
BmeRI GACNNNNNGTC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 62, 90
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 301
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 62, 90
Bsp143I GATC 2 cut(s) 72, 127
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 27
BspPI GGATC 2 cut(s) 80, 135
BssMI GATC 2 cut(s) 72, 127
Bst4CI ACNGT 2 cut(s) 8, 154
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 14, 192, 282
BstDEI CTNAG 1 cut(s) 353
BstKTI GATC 2 cut(s) 75, 130
BstMBI GATC 2 cut(s) 72, 127
BstMCI CGRYCG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 116
Cac8I GCNNGC 3 cut(s) 14, 192, 282
CciI TCATGA 1 cut(s) 27
CviAII CATG 3 cut(s) 28, 269, 281
CviJI RGCY 3 cut(s) 116, 194, 258
CviKI_1 RGCY 3 cut(s) 116, 194, 258
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 74, 129
DpnII GATC 2 cut(s) 72, 127
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 211
FaeI CATG 3 cut(s) 31, 272, 284
FaiI YATR 6 cut(s) 21, 29, 113, 270, 282, 333
FatI CATG 3 cut(s) 27, 268, 280
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 301
Hin1II CATG 3 cut(s) 31, 272, 284
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 28, 44, 318
HpyAV CCTTC 2 cut(s) 41, 248
HpyCH4III ACNGT 2 cut(s) 8, 154
HpyCH4IV ACGT 2 cut(s) 162, 286
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 162, 286
Hsp92II CATG 3 cut(s) 31, 272, 284
Kzo9I GATC 2 cut(s) 72, 127
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 6 cut(s) 233, 259, 314, 331, 351, 365
LweI GCATC 1 cut(s) 49
MaeII ACGT 2 cut(s) 162, 286
MaeIII GTNAC 4 cut(s) 158, 167, 289, 368
MalI GATC 2 cut(s) 74, 129
MboI GATC 2 cut(s) 72, 127
MboII GAAGA 2 cut(s) 16, 170
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 62, 90
MluCI AATT 2 cut(s) 107, 306
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 24, 73, 234, 348
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 302
NciI CCSGG 1 cut(s) 302
NdeII GATC 2 cut(s) 72, 127
NlaIII CATG 3 cut(s) 31, 272, 284
NmuCI GTSAC 3 cut(s) 158, 167, 289
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 27
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 238
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 287
PspCI CACGTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 72, 127
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 62, 90
SetI ASST 6 cut(s) 52, 68, 165, 196, 289, 370
SfaNI GCATC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SphI GCATGC 1 cut(s) 284
Sse9I AATT 2 cut(s) 107, 306
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 8, 154
TaiI ACGT 2 cut(s) 165, 289
TasI AATT 2 cut(s) 107, 306
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 3 cut(s) 158, 167, 289
Tsp45I GTSAC 3 cut(s) 158, 167, 289
TspDTI ATGAA 3 cut(s) 16, 17, 257
TspGWI ACGGA 1 cut(s) 308
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.