pycom12g17840

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000145
Physical Location & Seq
Forward (+)
20207223 .. 20209226
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17840.1

Sequence Viewer

Length: 555 bp
ATGTCACTCTGCTTGAACTCGGGTTACCATCCTGCCTACATCATTAAGCACCTTGAACCCGGTTTAAATCATAAGTTTGGGCCTTTCCTTACTAAACTATGGAACAACAAACTTGACAACCCCGACAAGTGGCAGGACATCTCCTGGTCTAAGTCCCTTCCTATCTCTGAGGATATTGCAAATAGCCTAGATGTGTACAGGCCGCAGTTGGAATCGTCTTTGGAAGAGCAAGGAATAACCTGGACAGTAGACGTGGACAACAAATCCACGACGGTTTCAGTAATCAGTGGGGACCAACGTATTATTGACAAGGCTTCTCAAATTCTTGAACTCATGGCCAAGAGCACTGTGGACCCAGAAGTGATATTACAGATAATTGATGGAAGTCAGCAACATGTTAACCTTAGGCTTTGGAATGAAGGTGGTCTTTGCATGAAATTTGGTTGTGAAGAGGAGGCAAGTTTGAAATGGCAGGAATGGCTGAAGGGCCCCAGCATGAAGGAAATAGCCGAGAAGATGCAGTGTAAATTTTTTCTACACGAAATGAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.06

Weight (kDa)

5.03

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 203
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 3 cut(s) 321, 437, 527
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 16, 56, 329, 466
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 2 cut(s) 143, 239
Alw21I GWGCWC 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 4 cut(s) 80, 200, 336, 487
ApaI GGGCCC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 321, 437, 527
AspS9I GGNCC 5 cut(s) 80, 292, 352, 487, 488
AsuC2I CCSGG 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 2 cut(s) 292, 352
AxyI CCTNAGG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 338
BanII GRGCYC 1 cut(s) 491
BarI GAAGNNNNNNTAC 2 cut(s) 351, 383
Bbv12I GWGCWC 1 cut(s) 347
BccI CCATC 2 cut(s) 36, 374
BciT130I CCWGG 2 cut(s) 145, 241
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 3 cut(s) 60, 145, 241
Bme18I GGWCC 2 cut(s) 292, 352
BmeT110I CYCGRG 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 5 cut(s) 80, 292, 352, 487, 488
BmiI GGNNCC 4 cut(s) 293, 354, 489, 490
BmrFI CCNGG 3 cut(s) 60, 145, 241
BmsI GCATC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 145, 241
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 467
BseSI GKGCMC 1 cut(s) 491
BseYI CCCAGC 1 cut(s) 491
BshFI GGCC 4 cut(s) 82, 202, 338, 489
BsiHKAI GWGCWC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 139, 305
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 2 cut(s) 139, 305
BsnI GGCC 4 cut(s) 82, 202, 338, 489
BsoBI CYCGRG 1 cut(s) 19
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 2 cut(s) 347, 491
Bsp1407I TGTACA 1 cut(s) 195
BspACI CCGC 1 cut(s) 203
BspANI GGCC 4 cut(s) 82, 202, 338, 489
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 4 cut(s) 293, 354, 489, 490
BspQI GCTCTTC 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 145, 241
Bst4CI ACNGT 3 cut(s) 247, 274, 349
Bst6I CTCTTC 2 cut(s) 219, 444
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 150, 168, 404
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstNI CCWGG 2 cut(s) 145, 241
BstNSI RCATGY 1 cut(s) 398
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 58, 143, 239
BstSLI GKGCMC 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 4 cut(s) 82, 202, 338, 489
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 3 cut(s) 292, 345, 527
Cfr13I GGNCC 5 cut(s) 80, 292, 352, 487, 488
Csp6I GTAC 1 cut(s) 196
CviAII CATG 4 cut(s) 334, 395, 433, 496
CviJI RGCY 9 cut(s) 82, 186, 202, 314, 338, 409, 481, 489, 509
CviKI_1 RGCY 9 cut(s) 82, 186, 202, 314, 338, 409, 481, 489, 509
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 3 cut(s) 150, 168, 404
DraI TTTAAA 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 219, 444
EarI CTCTTC 2 cut(s) 219, 444
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 292, 352
Eco57I CTGAAG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 19
Eco91I GGTNACC 1 cut(s) 23
EcoO109I RGGNCCY 2 cut(s) 487, 488
EcoO65I GGTNACC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 143, 239
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 4 cut(s) 337, 398, 436, 499
FaiI YATR 6 cut(s) 72, 100, 335, 396, 434, 497
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 2 cut(s) 139, 305
FatI CATG 4 cut(s) 333, 394, 432, 495
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 188
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 4 cut(s) 82, 202, 338, 489
HapII CCGG 1 cut(s) 60
Hin1II CATG 4 cut(s) 337, 398, 436, 499
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 212
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 5 cut(s) 196, 250, 256, 352, 400
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 5 cut(s) 196, 250, 256, 352, 400
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 4 cut(s) 167, 413, 478, 493
HpyCH4III ACNGT 3 cut(s) 247, 274, 349
HpyCH4IV ACGT 2 cut(s) 252, 298
HpyCH4V TGCA 3 cut(s) 179, 432, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpyF3I CTNAG 3 cut(s) 150, 168, 404
HpySE526I ACGT 2 cut(s) 252, 298
Hsp92II CATG 4 cut(s) 337, 398, 436, 499
KspAI GTTAAC 1 cut(s) 400
LguI GCTCTTC 1 cut(s) 219
LweI GCATC 1 cut(s) 507
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 252, 298
MaeIII GTNAC 2 cut(s) 3, 23
MboII GAAGA 3 cut(s) 236, 461, 526
MhlI GDGCHC 2 cut(s) 347, 491
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 4 cut(s) 321, 375, 437, 527
MluNI TGGCCA 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 163, 445, 448
Mox20I TGGCCA 1 cut(s) 338
MscI TGGCCA 1 cut(s) 338
MseI TTAA 3 cut(s) 45, 65, 399
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 60, 145, 241
MvaI CCWGG 2 cut(s) 145, 241
MwoI GCNNNNNNNGC 1 cut(s) 478
NciI CCSGG 1 cut(s) 60
NlaIII CATG 4 cut(s) 337, 398, 436, 499
NlaIV GGNNCC 4 cut(s) 293, 354, 489, 490
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 398
PciI ACATGT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 204
PscI ACATGT 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 143, 239
PspEI GGTNACC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 2 cut(s) 143, 239
PspN4I GGNNCC 4 cut(s) 293, 354, 489, 490
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 5 cut(s) 80, 292, 352, 487, 488
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 45, 65, 399
SatI GCNGC 1 cut(s) 203
Sau96I GGNCC 5 cut(s) 80, 292, 352, 487, 488
ScrFI CCNGG 3 cut(s) 60, 145, 241
SduI GDGCHC 2 cut(s) 347, 491
SetI ASST 6 cut(s) 54, 242, 255, 301, 405, 424
SfaNI GCATC 1 cut(s) 507
SinI GGWCC 2 cut(s) 292, 352
Sse9I AATT 4 cut(s) 321, 375, 437, 527
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 58, 143, 239
TaaI ACNGT 3 cut(s) 247, 274, 349
TaiI ACGT 2 cut(s) 255, 301
TasI AATT 4 cut(s) 321, 375, 437, 527
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 45, 65, 399
Tru9I TTAA 3 cut(s) 45, 65, 399
TscAI CASTG 3 cut(s) 292, 352, 527
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 432, 449, 512
TspRI CASTG 3 cut(s) 292, 352, 527
VpaK11BI GGWCC 2 cut(s) 292, 352
XapI RAATTY 3 cut(s) 321, 437, 527
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.