Rmu_sc0036218.1_g000001

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036218.1
OG0000145
Physical Location & Seq
Reverse (-)
1 .. 1385
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036218.1_g000001.1.cds

Sequence Viewer

Length: 408 bp
atgtcggaagattacccaaacgccgattacccaaacgccattgttctgcagctcgaggaggctctgatggtccaagatgaaattgaagtcgtctcttacatcaagttctacgatcgattccttgacacagatttgctgcaaaagagttggcctatagtggagtcgtgtttgagcaagcatggcgttttgtgcacactggatctggttaagggtaatatgaaggtttttaaaaccaaaggggctgaagatgaagacataattttcaaggcaattgatattttgcagcttttgtcgagaagtgttccagcacgttgggcaatacgaacgctggattgcagttgccaacatgagatcatcaagattgggaatcaagaaggggggatttgcaacatatttgggatcagtaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

4.76

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 207, 407
AcuI CTGAAG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 86, 265
AluBI AGCT 2 cut(s) 52, 286
AluI AGCT 2 cut(s) 52, 286
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 2 cut(s) 207, 407
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 49, 136, 283
AspS9I GGNCC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 61, 123, 295
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 97
BfmI CTRYAG 2 cut(s) 47, 153
BisI GCNGC 3 cut(s) 50, 137, 284
BlsI GCNGC 3 cut(s) 51, 138, 285
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 115
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 61, 123, 295
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 151
BshVI ATCGAT 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 112, 199, 351, 399
BspANI GGCC 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 2 cut(s) 207, 407
BsrI ACTGG 1 cut(s) 201
BssMI GATC 4 cut(s) 112, 199, 351, 399
BstC8I GCNNGC 1 cut(s) 176
BstKTI GATC 4 cut(s) 115, 202, 354, 402
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 4 cut(s) 112, 199, 351, 399
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 180, 189, 314
BstSFI CTRYAG 2 cut(s) 47, 153
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 61, 123, 295
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 1 cut(s) 151
BsuTUI ATCGAT 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 115
CviAII CATG 2 cut(s) 179, 347
CviJI RGCY 5 cut(s) 52, 62, 151, 242, 286
CviKI_1 RGCY 5 cut(s) 52, 62, 151, 242, 286
DpnI GATC 4 cut(s) 114, 201, 353, 401
DpnII GATC 4 cut(s) 112, 199, 351, 399
DraI TTTAAA 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 182, 350
FaiI YATR 6 cut(s) 155, 180, 218, 257, 348, 392
FatI CATG 2 cut(s) 178, 346
Fnu4HI GCNGC 3 cut(s) 50, 137, 284
Fsp4HI GCNGC 3 cut(s) 50, 137, 284
GluI GCNGC 3 cut(s) 50, 137, 284
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 2 cut(s) 182, 350
HinfI GANTC 3 cut(s) 117, 161, 367
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 7, 66
Hpy188III TCNNGA 3 cut(s) 294, 358, 371
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 214, 368
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 6 cut(s) 49, 139, 192, 283, 336, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 189, 314
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 2 cut(s) 182, 350
Kzo9I GATC 4 cut(s) 112, 199, 351, 399
LpnPI CCDG 4 cut(s) 182, 188, 314, 318
Lsp1109I GCAGC 3 cut(s) 61, 123, 295
MaeII ACGT 1 cut(s) 310
MalI GATC 4 cut(s) 114, 201, 353, 401
MboI GATC 4 cut(s) 112, 199, 351, 399
MboII GAAGA 3 cut(s) 20, 257, 263
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 3 cut(s) 81, 258, 270
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 2 cut(s) 49, 52
MseI TTAA 2 cut(s) 207, 228
MunI CAATTG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 180, 189, 314
NdeII GATC 4 cut(s) 112, 199, 351, 399
NlaIII CATG 2 cut(s) 182, 350
PaeR7I CTCGAG 1 cut(s) 53
PfeI GAWTC 2 cut(s) 117, 367
PkrI GCNGC 3 cut(s) 51, 138, 285
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 53
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 115
SaqAI TTAA 2 cut(s) 207, 228
SatI GCNGC 3 cut(s) 50, 137, 284
Sau3AI GATC 4 cut(s) 112, 199, 351, 399
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 194
SetI ASST 4 cut(s) 54, 225, 288, 313
SfcI CTRYAG 2 cut(s) 47, 153
Sfr274I CTCGAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 81, 258, 270
TaiI ACGT 1 cut(s) 313
TaqI TCGA 3 cut(s) 54, 115, 293
TasI AATT 3 cut(s) 81, 258, 270
TfiI GAWTC 2 cut(s) 117, 367
Tru1I TTAA 2 cut(s) 207, 228
Tru9I TTAA 2 cut(s) 207, 228
TscAI CASTG 1 cut(s) 201
TseI GCWGC 3 cut(s) 49, 136, 283
TspDTI ATGAA 3 cut(s) 93, 233, 264
TspRI CASTG 1 cut(s) 201
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.