pycom03g12790

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000145
Physical Location & Seq
Forward (+)
13569852 .. 13573520
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12790.10

Sequence Viewer

Length: 1413 bp
ATGGATGCTCACGGCGAGCGCCTCCAAACCCAGCTCAACGGCCTCAGCCATGGGGTGGCTGGTTTGAGAACCAGTTTAAGCAACCTCAAAGATCATCTACTCGTCACCGCCACCGAAAATCAAACATTTCTCAAAAAAGCCACCACAAATCTACTCACCGGGACCAAATTGGGCGCTTTCTTTGCCCCACTCACCACAACAGACGATGATCCAATCGAAGATTGCTTGAGCGGATACGCGGAATGGTATATGACCTTGCCCATCTTTCCGAAGTTTGCAAAAAGGCTAGACGGATATGAAAATCAATTGAAATCGTCTTTGGAAGGTCAAGGCATAAACTGGAAAGTAGATTATCGTCAGGTCCCTCGTTCAATGACAGTTTCAACCACTAGTGAGGACCCACATATTGCTAACAAGGCTTGTCAAATTCTTAAACTCTTGGCAAATACTACTGTTGACCCATCACTGATATTAGAGATAGTTGATGGAAGCATGGAACATGTTCACATTGGATTTCTTCATCTGAACCAAAAATTTAAAATTGAGAAGAAGGTAAAATTGAAATGGGACGAACTTTCCAGGCGCTCCATCAAGAAAATGGCCAAGATGACACGGTGTAAACTTTTCCTTAACAATAATTGCACGCTCACTGCTGTGGGTACATCAGATGGATTGGAGATGTTGAGGACAATGGTGGAAGGCATCTTTCTCCATGGTGTTGATCTTGCACAAACTGTGAAGATTGAATGTAAGGAATCAAACGATACTGTCGAGAAGAGTCTTGCGGAAAGTAGCATGTGCTCTTTCACTGAATACTATGGTGAAGACAGGGCAAAAAGGGTGCAAGATGTTTGGCCTATGGTGAAATCGTTTTTACAGGAGAACGGCATTTCATGCGAATTGAGTGCGTGTAACCGTTCCATGAAAGTCTCAACAACCACAGAGATCAAGGACCGAGATCGTATTGTCAGGGCCAGGCGTCTTCTTGAACTGCTAGGAAGAACTAACGTTCCACCTTCCCTTGCGATAGAAATTATGAACGGCCGTAAGCAGCATATCTTTATGAAGATTGGGCAGCAAGAAGGTGGGCTATGCTCAAGGTTTGGGATCGAGAAGGTGGAGTACGAAGATCGGCTCCGGAGATTTTGTGCCTCTATAGAGGAGATTATTGGCTTGACAGGCACCAATCTTTATCACTATGAAGACACTGTTACTCTTGTTGGGGGCGCTGTTGGTCAATCTGAAGACTTGGAGATGGCGAGGATCTTTGTGGAAGGCTATATTGTTCATAATGTTGAGAGTGATTGCGTCACAAAGCTGAAGCTGATGAAGTCTGAAAAGAGAAAAGATAGAGGAGGAGAAGACGCTTTGGCAAGTTGTCCAAGTAAAAAAAAACAAAAACTGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

52.92

Weight (kDa)

8.32

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1181
AccB7I CCANNNNNTGG 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 231
AccII CGCG 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 1137
AciI CCGC 4 cut(s) 108, 231, 239, 785
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 3 cut(s) 203, 1115, 1271
AcoI YGGCCR 2 cut(s) 600, 1042
AcsI RAATTY 2 cut(s) 426, 533
AcuI CTGAAG 2 cut(s) 1263, 1340
AcyI GRCGYC 1 cut(s) 979
AfaI GTAC 2 cut(s) 661, 1124
AfiI CCNNNNNNNGG 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 6 cut(s) 310, 372, 384, 562, 746, 989
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 2 cut(s) 578, 974
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AleI CACNNNNGTG 1 cut(s) 653
AloI GAACNNNNNNTCC 2 cut(s) 994, 1026
AluBI AGCT 3 cut(s) 34, 1318, 1324
AluI AGCT 3 cut(s) 34, 1318, 1324
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 1 cut(s) 934
AlwI GGATC 3 cut(s) 203, 1115, 1271
Aor13HI TCCGGA 1 cut(s) 1137
AoxI GGCC 5 cut(s) 40, 600, 854, 972, 1042
ApeKI GCWGC 2 cut(s) 1051, 1075
ApoI RAATTY 2 cut(s) 426, 533
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 4 cut(s) 21, 176, 585, 1229
AspS9I GGNCC 5 cut(s) 162, 361, 397, 952, 972
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 5 cut(s) 97, 148, 184, 833, 874
AvaII GGWCC 4 cut(s) 162, 361, 397, 952
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 1181
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
BbsI GAAGAC 5 cut(s) 831, 974, 1209, 1251, 1368
Bbv12I GWGCWC 1 cut(s) 803
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 1063, 1087
BccI CCATC 6 cut(s) 269, 469, 479, 596, 662, 1249
BceAI ACGGC 5 cut(s) 28, 55, 901, 1029, 1057
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 2 cut(s) 580, 976
BciVI GTATCC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 934
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 3 cut(s) 287, 390, 995
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 4 cut(s) 22, 177, 586, 1230
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 1052, 1076
BlsI GCNGC 2 cut(s) 1053, 1077
Bme1390I CCNGG 3 cut(s) 160, 580, 976
Bme18I GGWCC 4 cut(s) 162, 361, 397, 952
BmgT120I GGNCC 5 cut(s) 162, 361, 397, 952, 972
BmiI GGNNCC 5 cut(s) 163, 363, 399, 1136, 1183
BmrFI CCNGG 3 cut(s) 160, 580, 976
BmsI GCATC 1 cut(s) 711
BpiI GAAGAC 5 cut(s) 831, 974, 1209, 1251, 1368
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 247, 1081
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 979
BsaJI CCNNGG 2 cut(s) 49, 712
BsaWI WCCGGW 1 cut(s) 1137
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 72, 344
BseAI TCCGGA 1 cut(s) 1137
BseBI CCWGG 2 cut(s) 580, 976
BseDI CCNNGG 2 cut(s) 49, 712
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 72, 344
BseRI GAGGAG 3 cut(s) 1175, 1368, 1371
BseX3I CGGCCG 1 cut(s) 1042
BseXI GCAGC 2 cut(s) 1063, 1087
BseYI CCCAGC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 1045
BshFI GGCC 5 cut(s) 42, 602, 856, 974, 1044
BshNI GGYRCC 1 cut(s) 1181
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 2 cut(s) 159, 1138
BslFI GGGAC 3 cut(s) 175, 347, 581
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 934
BsmFI GGGAC 3 cut(s) 175, 347, 581
BsnI GGCC 5 cut(s) 42, 602, 856, 974, 1044
Bsp1286I GDGCHC 1 cut(s) 803
Bsp13I TCCGGA 1 cut(s) 1137
Bsp143I GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
Bsp19I CCATGG 2 cut(s) 49, 712
BspACI CCGC 4 cut(s) 108, 231, 239, 785
BspANI GGCC 5 cut(s) 42, 602, 856, 974, 1044
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 1137
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 5 cut(s) 163, 363, 399, 1136, 1183
BspPI GGATC 3 cut(s) 203, 1115, 1271
BspT107I GGYRCC 1 cut(s) 1181
BsrBI CCGCTC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 72, 344
BssECI CCNNGG 2 cut(s) 49, 712
BssMI GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
BssNI GRCGYC 1 cut(s) 979
BssT1I CCWWGG 2 cut(s) 49, 712
Bst2UI CCWGG 2 cut(s) 580, 976
Bst4CI ACNGT 7 cut(s) 379, 454, 615, 736, 769, 917, 1210
Bst6I CTCTTC 1 cut(s) 770
BstACI GRCGYC 1 cut(s) 979
BstAPI GCANNNNNTGC 1 cut(s) 894
BstC8I GCNNGC 2 cut(s) 17, 644
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 2 cut(s) 49, 712
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 4 cut(s) 22, 177, 586, 1230
BstHHI GCGC 4 cut(s) 21, 176, 585, 1229
BstKTI GATC 8 cut(s) 94, 211, 724, 948, 961, 1110, 1132, 1266
BstMAI GTCTC 1 cut(s) 934
BstMBI GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 4 cut(s) 182, 416, 894, 1179
BstNI CCWGG 2 cut(s) 580, 976
BstNSI RCATGY 2 cut(s) 503, 799
BstSCI CCNGG 3 cut(s) 158, 578, 974
BstSFI CTRYAG 1 cut(s) 1155
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 1063, 1087
BstV2I GAAGAC 5 cut(s) 831, 974, 1209, 1251, 1368
BstX2I RGATCY 1 cut(s) 1263
BstYI RGATCY 1 cut(s) 1263
BstZI CGGCCG 1 cut(s) 1042
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 5 cut(s) 42, 602, 856, 974, 1044
BtgI CCRYGG 2 cut(s) 49, 712
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 4 cut(s) 464, 648, 807, 1206
Cac8I GCNNGC 2 cut(s) 17, 644
CfoI GCGC 4 cut(s) 21, 176, 585, 1229
Cfr13I GGNCC 5 cut(s) 162, 361, 397, 952, 972
CseI GACGC 3 cut(s) 968, 1297, 1373
Csp6I GTAC 2 cut(s) 660, 1123
CviAII CATG 7 cut(s) 50, 493, 500, 713, 796, 894, 922
CviQI GTAC 2 cut(s) 660, 1123
DdeI CTNAG 1 cut(s) 44
DpnI GATC 8 cut(s) 93, 210, 723, 947, 960, 1109, 1131, 1265
DpnII GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 600, 1042
EagI CGGCCG 1 cut(s) 1042
Eam1104I CTCTTC 1 cut(s) 770
EarI CTCTTC 1 cut(s) 770
EclXI CGGCCG 1 cut(s) 1042
Eco130I CCWWGG 2 cut(s) 49, 712
Eco47I GGWCC 4 cut(s) 162, 361, 397, 952
Eco52I CGGCCG 1 cut(s) 1042
Eco57I CTGAAG 2 cut(s) 1263, 1340
EcoO109I RGGNCCY 2 cut(s) 361, 397
EcoRII CCWGG 2 cut(s) 578, 974
EcoT14I CCWWGG 2 cut(s) 49, 712
ErhI CCWWGG 2 cut(s) 49, 712
FaeI CATG 7 cut(s) 53, 496, 503, 716, 799, 897, 925
FaqI GGGAC 3 cut(s) 175, 347, 581
FatI CATG 7 cut(s) 49, 492, 499, 712, 795, 893, 921
Fnu4HI GCNGC 2 cut(s) 1052, 1076
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 1052, 1076
FspBI CTAG 3 cut(s) 287, 390, 995
GlaI GCGC 4 cut(s) 20, 175, 584, 1228
GluI GCNGC 2 cut(s) 1052, 1076
GsaI CCCAGC 1 cut(s) 34
HaeII RGCGCY 4 cut(s) 22, 177, 586, 1230
HaeIII GGCC 5 cut(s) 42, 602, 856, 974, 1044
HapII CCGG 2 cut(s) 159, 1138
HgaI GACGC 3 cut(s) 968, 1297, 1373
HhaI GCGC 4 cut(s) 21, 176, 585, 1229
Hin1I GRCGYC 1 cut(s) 979
Hin1II CATG 7 cut(s) 53, 496, 503, 716, 799, 897, 925
Hin6I GCGC 4 cut(s) 19, 174, 583, 1227
HinP1I GCGC 4 cut(s) 19, 174, 583, 1227
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 755, 778
HpaII CCGG 2 cut(s) 159, 1138
HphI GGTGA 5 cut(s) 97, 148, 184, 833, 874
Hpy166II GTNNAC 3 cut(s) 457, 505, 620
Hpy188I TCNGA 5 cut(s) 270, 525, 667, 1243, 1336
Hpy188III TCNNGA 5 cut(s) 592, 772, 986, 1111, 1138
Hpy8I GTNNAC 3 cut(s) 457, 505, 620
HpyAV CCTTC 7 cut(s) 317, 544, 692, 1026, 1076, 1108, 1268
HpyCH4III ACNGT 7 cut(s) 379, 454, 615, 736, 769, 917, 1210
HpyCH4IV ACGT 1 cut(s) 1008
HpyCH4V TGCA 4 cut(s) 278, 642, 728, 844
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 416, 894, 1179
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 1008
Hsp92I GRCGYC 1 cut(s) 979
Hsp92II CATG 7 cut(s) 53, 496, 503, 716, 799, 897, 925
HspAI GCGC 4 cut(s) 19, 174, 583, 1227
Kpn2I TCCGGA 1 cut(s) 1137
Kzo9I GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
LmnI GCTCC 2 cut(s) 590, 1140
Lsp1109I GCAGC 2 cut(s) 1063, 1087
LweI GCATC 1 cut(s) 711
MaeI CTAG 3 cut(s) 287, 390, 995
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 4 cut(s) 103, 911, 1210, 1309
MalI GATC 8 cut(s) 93, 210, 723, 947, 960, 1109, 1131, 1265
MbiI CCGCTC 1 cut(s) 231
MboI GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 1 cut(s) 1263
MhlI GDGCHC 1 cut(s) 803
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 9 cut(s) 167, 305, 426, 533, 540, 557, 637, 899, 1032
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 1 cut(s) 787
Mox20I TGGCCA 1 cut(s) 602
MroI TCCGGA 1 cut(s) 1137
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 602
MseI TTAA 4 cut(s) 77, 432, 537, 630
MslI CAYNNNNRTG 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 602
MspI CCGG 2 cut(s) 159, 1138
MspR9I CCNGG 3 cut(s) 160, 580, 976
MunI CAATTG 1 cut(s) 305
MvaI CCWGG 2 cut(s) 580, 976
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 182, 416, 894, 1179
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 2 cut(s) 49, 712
NdeII GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
NlaIII CATG 7 cut(s) 53, 496, 503, 716, 799, 897, 925
NlaIV GGNNCC 5 cut(s) 163, 363, 399, 1136, 1183
NmuCI GTSAC 2 cut(s) 103, 1309
NspI RCATGY 2 cut(s) 503, 799
OliI CACNNNNGTG 1 cut(s) 653
PciI ACATGT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 755
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 2 cut(s) 1053, 1077
PleI GAGTC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 786
PpuMI RGGWCCY 2 cut(s) 361, 397
PscI ACATGT 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 1008
Psp5II RGGWCCY 2 cut(s) 361, 397
Psp6I CCWGG 2 cut(s) 578, 974
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 2 cut(s) 578, 974
PspN4I GGNNCC 5 cut(s) 163, 363, 399, 1136, 1183
PspPI GGNCC 5 cut(s) 162, 361, 397, 952, 972
PspPPI RGGWCCY 2 cut(s) 361, 397
PsuI RGATCY 1 cut(s) 1263
RsaI GTAC 2 cut(s) 661, 1124
RsaNI GTAC 2 cut(s) 660, 1123
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 4 cut(s) 77, 432, 537, 630
SatI GCNGC 2 cut(s) 1052, 1076
Sau3AI GATC 8 cut(s) 91, 208, 721, 945, 958, 1107, 1129, 1263
Sau96I GGNCC 5 cut(s) 162, 361, 397, 952, 972
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 3 cut(s) 160, 580, 976
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 1 cut(s) 1155
SinI GGWCC 4 cut(s) 162, 361, 397, 952
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 2 cut(s) 226, 1096
SmoI CTYRAG 2 cut(s) 226, 1096
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 9 cut(s) 167, 305, 426, 533, 540, 557, 637, 899, 1032
SsiI CCGC 4 cut(s) 108, 231, 239, 785
SspMI CTAG 3 cut(s) 287, 390, 995
StyD4I CCNGG 3 cut(s) 158, 578, 974
StyI CCWWGG 2 cut(s) 49, 712
TaaI ACNGT 7 cut(s) 379, 454, 615, 736, 769, 917, 1210
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 3 cut(s) 216, 771, 1110
TaqII GACCGA 1 cut(s) 969
TasI AATT 9 cut(s) 167, 305, 426, 533, 540, 557, 637, 899, 1032
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 4 cut(s) 77, 432, 537, 630
Tru9I TTAA 4 cut(s) 77, 432, 537, 630
TscAI CASTG 4 cut(s) 471, 655, 814, 1213
TseFI GTSAC 2 cut(s) 103, 1309
TseI GCWGC 2 cut(s) 1051, 1075
Tsp45I GTSAC 2 cut(s) 103, 1309
TspDTI ATGAA 9 cut(s) 312, 509, 882, 938, 1052, 1079, 1215, 1277, 1343
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 4 cut(s) 471, 655, 814, 1213
Van91I CCANNNNNTGG 1 cut(s) 55
VpaK11BI GGWCC 4 cut(s) 162, 361, 397, 952
XapI RAATTY 2 cut(s) 426, 533
XceI RCATGY 2 cut(s) 503, 799
XcmI CCANNNNNNNNNTGG 2 cut(s) 56, 595
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 287, 390, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.