FvH4_5g09161

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000145
Physical Location & Seq
Forward (+)
5295556 .. 5296473
918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09161.t1

Sequence Viewer

Length: 324 bp
ATGGTTCATGACCACATCAAAACTGGGTATCAAGAAGATGGGCTTGCTGCAATACATGGGATCAAGAGGGAGCGATTTGTTAAACGGCAGACCAGATTCCTGGAATGCTTAAAGGACTTTTCACGCCTGCTGAATGTTGGTCTGTATGTTAATGGAAACACTGTGACTGCTGCAGGAACTTCACTTGAGCAAGTAAAGGTGATTAGAAGGATTGTCGAAAGGTGTTATGTTGAAAATGTGAGTCCTGCAGCTATTGTCAGCCGCTTAAACATGAGGTTAGATATCAATAATGCGGAGCGACAGCTTCGAGCTCTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.25

Weight (kDa)

9.82

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 22 - 91 1.6e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 262, 293
AclWI GGATC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 251, 304, 311
AluI AGCT 3 cut(s) 251, 304, 311
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 47, 170, 248
AsuHPI GGTGA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 34, 157, 260
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 171, 246
BisI GCNGC 4 cut(s) 48, 171, 249, 262
BlsI GCNGC 4 cut(s) 49, 172, 250, 263
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 34, 157, 260
BsiHKAI GWGCWC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 2 cut(s) 262, 293
BspHI TCATGA 1 cut(s) 7
BspMAI CTGCAG 2 cut(s) 175, 250
BspPI GGATC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 45, 128
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 171, 246
BstV1I GCAGC 3 cut(s) 34, 157, 260
BstXI CCANNNNNNTGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 45, 128
CciI TCATGA 1 cut(s) 7
CviAII CATG 3 cut(s) 8, 56, 271
CviJI RGCY 5 cut(s) 43, 251, 261, 304, 311
CviKI_1 RGCY 5 cut(s) 43, 251, 261, 304, 311
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 313
FaeI CATG 3 cut(s) 11, 59, 274
FaiI YATR 5 cut(s) 9, 57, 147, 228, 272
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 3 cut(s) 7, 55, 270
Fnu4HI GCNGC 4 cut(s) 48, 171, 249, 262
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 4 cut(s) 48, 171, 249, 262
GluI GCNGC 4 cut(s) 48, 171, 249, 262
Hin1II CATG 3 cut(s) 11, 59, 274
HinfI GANTC 2 cut(s) 96, 241
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 8, 32, 64
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 50, 173, 248
Hsp92II CATG 3 cut(s) 11, 59, 274
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 70, 295
LpnPI CCDG 7 cut(s) 9, 86, 106, 113, 140, 159, 258
Lsp1109I GCAGC 3 cut(s) 34, 157, 260
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 2 cut(s) 60, 267
MseI TTAA 4 cut(s) 81, 110, 150, 266
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 101
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 11, 59, 274
NmuCI GTSAC 1 cut(s) 163
PagI TCATGA 1 cut(s) 7
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 96
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 4 cut(s) 49, 172, 250, 263
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PstI CTGCAG 2 cut(s) 175, 250
SacI GAGCTC 1 cut(s) 313
SaqAI TTAA 4 cut(s) 81, 110, 150, 266
SatI GCNGC 4 cut(s) 48, 171, 249, 262
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 313
SetI ASST 6 cut(s) 201, 224, 253, 278, 306, 313
SfcI CTRYAG 2 cut(s) 171, 246
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 2 cut(s) 262, 293
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 216, 307
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 4 cut(s) 81, 110, 150, 266
Tru9I TTAA 4 cut(s) 81, 110, 150, 266
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 3 cut(s) 47, 170, 248
Tsp45I GTSAC 1 cut(s) 163
TspRI CASTG 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.