Rroxscaffold_3G00264820

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000145
Physical Location & Seq
Forward (+)
58355485 .. 58357993
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264820.1

Sequence Viewer

Length: 441 bp
ATGGTGATCGGAAACATATCCTTGATCATCAAAACTGGGAATCAACAAGGTGGGCTTTGCTCCATATATGGGATCAAGAAGGATCAATTTGTTAAACAACGGGAATGTCTTGCCTGCTCCCTAGAGGCACTTGCAGCACTGACATTTTGTTATCTTTTTCTTAATGAAGACACTGTTGCTGCAGTGGGAGACCCTCTAGCTTTAATGGCAATCAGGAAGCTTGTCGTAGGCTGCATTGTTAACAATGCGGATCCTGCAACAACTATCAGTAAGGTTAAAACTGTCTTGAGGAGGAGACAAGGAGTGGAAAATCTTCAACACCCAAATGTCGATTACTTGAGAATGGAGAACTCTGGCCCTGCCTTGGATCTATATGGCATGCTTGAAGTAACCTCTTTCTCTAAGACCTGCTATATAGGCCGAGGTTCATTTTTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

146

Amino Acids

15.96

Weight (kDa)

8.55

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 26 - 91 1.8e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 416
AciI CCGC 1 cut(s) 248
AclWI GGATC 5 cut(s) 80, 90, 245, 258, 375
AfiI CCNNNNNNNGG 2 cut(s) 69, 364
AgsI TTSAA 2 cut(s) 317, 386
AluBI AGCT 2 cut(s) 200, 220
AluI AGCT 2 cut(s) 200, 220
Alw26I GTCTC 2 cut(s) 183, 289
AlwI GGATC 5 cut(s) 80, 90, 245, 258, 375
AoxI GGCC 2 cut(s) 355, 418
ApeKI GCWGC 3 cut(s) 134, 179, 231
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 146, 166, 218
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 183, 289
BfaI CTAG 2 cut(s) 122, 197
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 3 cut(s) 135, 180, 232
BlsI GCNGC 3 cut(s) 136, 181, 233
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 307, 358
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 363, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 364
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 363, 421
BseLI CCNNNNNNNGG 2 cut(s) 69, 364
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 2 cut(s) 304, 307
BseXI GCAGC 3 cut(s) 146, 166, 218
BshFI GGCC 2 cut(s) 357, 420
BslI CCNNNNNNNGG 2 cut(s) 69, 364
BsmAI GTCTC 2 cut(s) 183, 289
BsnI GGCC 2 cut(s) 357, 420
Bso31I GGTCTC 1 cut(s) 183
Bsp143I GATC 6 cut(s) 6, 24, 72, 82, 250, 367
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 357, 420
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 5 cut(s) 80, 90, 245, 258, 375
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 363, 421
BssMI GATC 6 cut(s) 6, 24, 72, 82, 250, 367
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 175, 283
BstC8I GCNNGC 2 cut(s) 115, 380
BstDEI CTNAG 1 cut(s) 402
BstKTI GATC 6 cut(s) 9, 27, 75, 85, 253, 370
BstMAI GTCTC 2 cut(s) 183, 289
BstMBI GATC 6 cut(s) 6, 24, 72, 82, 250, 367
BstMWI GCNNNNNNNGC 4 cut(s) 134, 206, 254, 417
BstNSI RCATGY 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 146, 166, 218
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 250, 367
BstYI RGATCY 2 cut(s) 250, 367
BsuRI GGCC 2 cut(s) 357, 420
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 137, 171, 189
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 2 cut(s) 115, 380
Cfr13I GGNCC 1 cut(s) 356
CviAII CATG 1 cut(s) 379
CviJI RGCY 6 cut(s) 55, 200, 220, 231, 357, 420
CviKI_1 RGCY 6 cut(s) 55, 200, 220, 231, 357, 420
DdeI CTNAG 1 cut(s) 402
DpnI GATC 6 cut(s) 8, 26, 74, 84, 252, 369
DpnII GATC 6 cut(s) 6, 24, 72, 82, 250, 367
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 1 cut(s) 382
FaiI YATR 9 cut(s) 17, 65, 67, 69, 373, 375, 380, 414, 416
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 1 cut(s) 378
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 135, 180, 232
Fsp4HI GCNGC 3 cut(s) 135, 180, 232
FspBI CTAG 2 cut(s) 122, 197
GluI GCNGC 3 cut(s) 135, 180, 232
HaeIII GGCC 2 cut(s) 357, 420
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 40
HpaI GTTAAC 1 cut(s) 241
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 3 cut(s) 76, 214, 286
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 175, 283
HpyCH4V TGCA 4 cut(s) 134, 182, 234, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 206, 254, 417
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 6 cut(s) 6, 24, 72, 82, 250, 367
LmnI GCTCC 2 cut(s) 65, 122
LpnPI CCDG 7 cut(s) 21, 127, 199, 267, 339, 372, 421
Lsp1109I GCAGC 3 cut(s) 146, 166, 218
MaeI CTAG 2 cut(s) 122, 197
MaeIII GTNAC 1 cut(s) 388
MalI GATC 6 cut(s) 8, 26, 74, 84, 252, 369
MboI GATC 6 cut(s) 6, 24, 72, 82, 250, 367
MboII GAAGA 2 cut(s) 179, 305
MflI RGATCY 2 cut(s) 250, 367
MluCI AATT 1 cut(s) 86
MnlI CCTC 6 cut(s) 118, 204, 282, 285, 403, 416
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 5 cut(s) 93, 162, 203, 240, 276
MslI CAYNNNNRTG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 134, 206, 254, 417
NdeII GATC 6 cut(s) 6, 24, 72, 82, 250, 367
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 252
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 136, 181, 233
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 250, 367
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 5 cut(s) 93, 162, 203, 240, 276
SatI GCNGC 3 cut(s) 135, 180, 232
Sau3AI GATC 6 cut(s) 6, 24, 72, 82, 250, 367
Sau96I GGNCC 1 cut(s) 356
SetI ASST 7 cut(s) 52, 202, 222, 276, 395, 410, 427
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 286, 337
SmoI CTYRAG 2 cut(s) 286, 337
SphI GCATGC 1 cut(s) 382
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 122, 197
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 175, 283
TaqI TCGA 1 cut(s) 330
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 5 cut(s) 93, 162, 203, 240, 276
Tru9I TTAA 5 cut(s) 93, 162, 203, 240, 276
TscAI CASTG 3 cut(s) 144, 178, 189
TseI GCWGC 3 cut(s) 134, 179, 231
TspDTI ATGAA 2 cut(s) 180, 417
TspRI CASTG 3 cut(s) 144, 178, 189
XceI RCATGY 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 122, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.