Rorug05G0014400

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000145
Physical Location & Seq
Reverse (-)
950111 .. 952122
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0014400.1

Sequence Viewer

Length: 1284 bp
ATGGAAGATCAAAGCCATCCAATTCTGCCAAAACAAAACTCTATCTCCAGCCATGAAGGACTTGACTTGCCGAGCTTTGGTTCGTGCCTGAAATGGGTCTTTGTGGACCAGTCTAGTATATGGAGAACTGGTCTTTCATGGTCAATCTTCTTCGTCTTAGCCATTGGCGTACCACTAGTCACTCACTTCCTTCTCTCCTGCTCGAGCTGTGATGCGAACCATAGCAGACCTTACCATGTTGTTTCCCAGATTTCGCTTTCCTTGTTCGCAATGCTCTCCTTCATTAGCCTCTCCTGCTGGACTCGTAAATTTGGTCTGAAGAGGTTTCTCTTCCTTGACAAGTTAAGTGATGCAAGTGAGAAAGTCCGTCATGAATATAAGCAACAGTTTCAGAATTCAATGAAGCTCCTATGCTTGATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATCTGGTGGTATGTCTCAGGGGCCACAGAACTACCATACTATGGTAACATGTACTTGAGTGACACAATATTATGCATGTTGGAGCTGTGTTCATGGCTTTATAGGACCACAATTTTCTTCCTGGTGTGTGTTCTGTTCCGGCTCATTTGCCATCTGCAAATACAAAGACTAGAAATTTACGCGCAAGTTTTTCAAAAGGAAACCGAGGTGGAGACAATAATGATGGAACACAACAAGATCAGAAGGACCTTTAGGATTATAAGCCACCGGTTTCGAGCGTTCATCTTGGTCTCTCTGATTATGGTTACAGCTAGTCAGCTCGCCTTTCTTGTCATGATAACCAGGTCCAGTGCTCATGTTAATATCTACAACGCTGGAGAACTCGCTTTATGTTCTATAAGCCTTGTGACTAGTCTATTCATATGTTTGCGGAGTGCAACCAAAGTAACACATAAAGCACAGAAAGTTACTGGGCTTGCTGCAAAGTGGCATGTCTGTGCCACAATCCACTCTTTTGATTACGCAGAAACTGAGACTCCGATGGTGCCTCAGGTTTCCTCAAATCATCAAGTGTTTCCCTTCGGTGCTGATTTGGAATCAGATGATGAAGAAGGGGACGAAGAAGACGATCTTGACAACACCAAGTTGGTGCCAATTTTCACAAACACAATCTCATTCCAGAAGAGACAAGCTCTAGTGAAATATTTAGAGCATAATAGAGCAGGAATTACAGTGTTTGGGTTCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCTCTTCTTCTCTGGATGCTCAACAAGACAATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

49.06

Weight (kDa)

7.22

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 23 - 413 1.5e-162 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 2 cut(s) 1000, 1105
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 638
AciI CCGC 1 cut(s) 886
AcsI RAATTY 4 cut(s) 308, 394, 630, 1236
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 171, 452, 509
AfiI CCNNNNNNNGG 3 cut(s) 77, 94, 497
AflIII ACRYGT 1 cut(s) 504
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 2 cut(s) 399, 650
AhlI ACTAGT 2 cut(s) 175, 866
AjnI CCWGG 2 cut(s) 576, 797
AluBI AGCT 8 cut(s) 75, 207, 406, 541, 767, 775, 1148, 1243
AluI AGCT 8 cut(s) 75, 207, 406, 541, 767, 775, 1148, 1243
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 5 cut(s) 475, 662, 751, 983, 1135
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 437, 935
ApoI RAATTY 4 cut(s) 308, 394, 630, 1236
AsiGI ACCGGT 1 cut(s) 723
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 5 cut(s) 106, 477, 561, 702, 801
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 4 cut(s) 106, 561, 702, 801
AxyI CCTNAGG 1 cut(s) 1005
BanI GGYRCC 2 cut(s) 1000, 1105
BbsI GAAGAC 2 cut(s) 415, 1086
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 2 cut(s) 424, 922
BccI CCATC 4 cut(s) 24, 615, 673, 991
BciT130I CCWGG 2 cut(s) 578, 799
BcoDI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BcuI ACTAGT 2 cut(s) 175, 866
BfaI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 2 cut(s) 438, 936
BlsI GCNGC 2 cut(s) 439, 937
Bme1390I CCNGG 2 cut(s) 578, 799
Bme18I GGWCC 4 cut(s) 106, 561, 702, 801
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 106, 477, 561, 702, 801
BmiI GGNNCC 3 cut(s) 478, 1002, 1107
BmrFI CCNGG 2 cut(s) 578, 799
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 3 cut(s) 202, 340, 1251
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 2 cut(s) 415, 1086
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
BpmI CTGGAG 2 cut(s) 31, 852
BpuEI CTTGAG 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 115, 145, 976, 1006
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 94, 497
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 4 cut(s) 109, 133, 804, 931
Bse21I CCTNAGG 1 cut(s) 1005
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 578, 799
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 2 cut(s) 16, 1266
BseLI CCNNNNNNNGG 3 cut(s) 77, 94, 497
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 486, 978, 1019
BseNI ACTGG 4 cut(s) 109, 133, 804, 931
BseXI GCAGC 2 cut(s) 424, 922
Bsh1236I CGCG 1 cut(s) 638
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 2 cut(s) 1000, 1105
BshTI ACCGGT 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 595, 724
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 77, 94, 497
BsmAI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BsmFI GGGAC 1 cut(s) 1085
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 751
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 3 cut(s) 7, 693, 1084
BspACI CCGC 1 cut(s) 886
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 3 cut(s) 485, 979, 1018
BspFNI CGCG 1 cut(s) 638
BspHI TCATGA 2 cut(s) 370, 789
BspLI GGNNCC 3 cut(s) 478, 1002, 1107
BspMAI CTGCAG 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 1254
BspT107I GGYRCC 2 cut(s) 1000, 1105
BspTNI GGTCTC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 4 cut(s) 109, 133, 804, 931
BssAI RCCGGY 1 cut(s) 723
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 3 cut(s) 7, 693, 1084
Bst2UI CCWGG 2 cut(s) 578, 799
Bst4CI ACNGT 2 cut(s) 387, 1189
Bst6I CTCTTC 4 cut(s) 314, 335, 1133, 1254
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 777, 933, 1245
BstDEI CTNAG 4 cut(s) 157, 472, 987, 1005
BstF5I GGATG 2 cut(s) 16, 1266
BstFNI CGCG 1 cut(s) 638
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 3 cut(s) 10, 696, 1087
BstMAI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BstMBI GATC 3 cut(s) 7, 693, 1084
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 2 cut(s) 578, 799
BstNSI RCATGY 3 cut(s) 508, 535, 950
BstSCI CCNGG 2 cut(s) 576, 797
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 638
BstV1I GCAGC 2 cut(s) 424, 922
BstV2I GAAGAC 2 cut(s) 415, 1086
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 1 cut(s) 479
BtsCI GGATG 2 cut(s) 16, 1266
BtsIMutI CAGTG 2 cut(s) 811, 1194
Cac8I GCNNGC 3 cut(s) 777, 933, 1245
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 2 cut(s) 370, 789
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 5 cut(s) 106, 477, 561, 702, 801
CsiI ACCWGGT 1 cut(s) 797
Csp6I GTAC 3 cut(s) 170, 451, 508
CspAI ACCGGT 1 cut(s) 723
CviQI GTAC 3 cut(s) 170, 451, 508
DdeI CTNAG 4 cut(s) 157, 472, 987, 1005
DpnI GATC 3 cut(s) 9, 695, 1086
DpnII GATC 3 cut(s) 7, 693, 1084
Eam1104I CTCTTC 4 cut(s) 314, 335, 1133, 1254
EarI CTCTTC 4 cut(s) 314, 335, 1133, 1254
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 4 cut(s) 106, 561, 702, 801
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 394, 1236
EcoRII CCWGG 2 cut(s) 576, 797
EcoT22I ATGCAT 1 cut(s) 533
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 1 cut(s) 1085
FauNDI CATATG 1 cut(s) 878
Fnu4HI GCNGC 2 cut(s) 438, 936
FokI GGATG 2 cut(s) 3, 1273
Fsp4HI GCNGC 2 cut(s) 438, 936
FspBI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 438, 936
GsuI CTGGAG 2 cut(s) 31, 852
HaeIII GGCC 1 cut(s) 479
HapII CCGG 2 cut(s) 595, 724
HhaI GCGC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HinfI GANTC 3 cut(s) 301, 991, 1052
HpaII CCGG 2 cut(s) 595, 724
Hpy166II GTNNAC 3 cut(s) 106, 451, 1207
Hpy188I TCNGA 6 cut(s) 318, 393, 698, 753, 996, 1057
Hpy188III TCNNGA 5 cut(s) 371, 790, 1088, 1135, 1258
Hpy8I GTNNAC 3 cut(s) 106, 451, 1207
HpyAV CCTTC 6 cut(s) 50, 200, 289, 693, 1045, 1061
HpyCH4III ACNGT 2 cut(s) 387, 1189
HpyCH4V TGCA 6 cut(s) 353, 440, 531, 613, 893, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 4 cut(s) 157, 472, 987, 1005
HspAI GCGC 1 cut(s) 638
Kzo9I GATC 3 cut(s) 7, 693, 1084
LguI GCTCTTC 1 cut(s) 1254
LmnI GCTCC 2 cut(s) 411, 538
Lsp1109I GCAGC 2 cut(s) 424, 922
LweI GCATC 3 cut(s) 202, 340, 1251
MabI ACCWGGT 1 cut(s) 797
MaeI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
MaeIII GTNAC 7 cut(s) 178, 500, 515, 760, 862, 901, 922
MalI GATC 3 cut(s) 9, 695, 1086
MboI GATC 3 cut(s) 7, 693, 1084
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
MlyI GAGTC 2 cut(s) 295, 985
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 5 cut(s) 299, 315, 655, 1014, 1024
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 3 cut(s) 344, 816, 1282
MslI CAYNNNNRTG 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 2 cut(s) 595, 724
MspR9I CCNGG 2 cut(s) 578, 799
MvaI CCWGG 2 cut(s) 578, 799
MvnI CGCG 1 cut(s) 638
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeI CATATG 1 cut(s) 878
NdeII GATC 3 cut(s) 7, 693, 1084
NlaIV GGNNCC 3 cut(s) 478, 1002, 1107
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 178, 515, 862
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 3 cut(s) 508, 535, 950
PaeR7I CTCGAG 1 cut(s) 202
PagI TCATGA 2 cut(s) 370, 789
PciI ACATGT 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 1254
PcsI WCGNNNNNNNCGW 1 cut(s) 1080
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 2 cut(s) 439, 937
PleI GAGTC 2 cut(s) 295, 985
PpsI GAGTC 2 cut(s) 295, 985
PpuMI RGGWCCY 1 cut(s) 702
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 576, 797
PspGI CCWGG 2 cut(s) 576, 797
PspN4I GGNNCC 3 cut(s) 478, 1002, 1107
PspPI GGNCC 5 cut(s) 106, 477, 561, 702, 801
PspPPI RGGWCCY 1 cut(s) 702
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 1243
RsaI GTAC 3 cut(s) 171, 452, 509
RsaNI GTAC 3 cut(s) 170, 451, 508
RseI CAYNNNNRTG 1 cut(s) 951
SapI GCTCTTC 1 cut(s) 1254
SaqAI TTAA 3 cut(s) 344, 816, 1282
SatI GCNGC 2 cut(s) 438, 936
Sau3AI GATC 3 cut(s) 7, 693, 1084
Sau96I GGNCC 5 cut(s) 106, 477, 561, 702, 801
SchI GAGTC 2 cut(s) 295, 985
ScrFI CCNGG 2 cut(s) 578, 799
SduI GDGCHC 1 cut(s) 811
SexAI ACCWGGT 1 cut(s) 797
SfaNI GCATC 3 cut(s) 202, 340, 1251
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 202
SinI GGWCC 4 cut(s) 106, 561, 702, 801
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 202, 511
SmoI CTYRAG 2 cut(s) 202, 511
SpeI ACTAGT 2 cut(s) 175, 866
Sse9I AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
SsiI CCGC 1 cut(s) 886
SspI AATATT 2 cut(s) 525, 1160
SspMI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
StyD4I CCNGG 2 cut(s) 576, 797
TaaI ACNGT 2 cut(s) 387, 1189
TaqI TCGA 2 cut(s) 203, 730
TasI AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
TatI WGTACW 2 cut(s) 450, 507
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 3 cut(s) 344, 816, 1282
Tru9I TTAA 3 cut(s) 344, 816, 1282
TscAI CASTG 2 cut(s) 811, 1194
TseFI GTSAC 3 cut(s) 178, 515, 862
TseI GCWGC 2 cut(s) 437, 935
Tsp45I GTSAC 3 cut(s) 178, 515, 862
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 811, 1194
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 4 cut(s) 106, 561, 702, 801
XapI RAATTY 4 cut(s) 308, 394, 630, 1236
XceI RCATGY 3 cut(s) 508, 535, 950
XhoI CTCGAG 1 cut(s) 202
XspI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.