Rroxscaffold_1G00062630

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000145
Physical Location & Seq
Forward (+)
84699209 .. 84699767
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062630.1

Sequence Viewer

Length: 318 bp
ATGTCGGAAGATTACCCAAACGCCATTGTTCTGCAGCTCGAGGAGGCTCTGATGGTCCAAGATGAAATTGAAGTCGTCTCTTACACCAAGTTCTGCGATCGATTCCTTGGTATTTATGGTTTGGGAAATACCATTGCTGTTATTGGTCCACTGCAAGGAATAAAGACGATAACAAAGATTGTGGAAGACTGCATCGCTCACAATGTGCCTCCTGCACCCCGTGTGCGGAGGATTAAAAAGAAGACTCAACTGATGAAGGATGCGAGGATTAAAATGACAAGTGAAGTGATGATGAGTCTCGAGGCTTTTCATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

6.72

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 41 - 86 2.1e-08 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AdeI CACNNNGTG 2 cut(s) 205, 221
AfiI CCNNNNNNNGG 2 cut(s) 155, 225
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 82, 302
Ama87I CYCGRG 2 cut(s) 38, 299
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 55, 146
AvaI CYCGRG 2 cut(s) 38, 299
AvaII GGWCC 2 cut(s) 55, 146
BbsI GAAGAC 2 cut(s) 192, 248
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 82, 302
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme18I GGWCC 2 cut(s) 55, 146
BmeT110I CYCGRG 2 cut(s) 38, 299
BmgT120I GGNCC 2 cut(s) 55, 146
BmsI GCATC 2 cut(s) 201, 250
BpiI GAAGAC 2 cut(s) 192, 248
Bsa29I ATCGAT 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 225
Bse3DI GCAATG 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 155, 225
BseMI GCAATG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 38, 299
BslI CCNNNNNNNGG 2 cut(s) 155, 225
BsmAI GTCTC 2 cut(s) 82, 302
BsmBI CGTCTC 1 cut(s) 82
BsoBI CYCGRG 2 cut(s) 38, 299
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 82, 302
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 192, 248
Bsu15I ATCGAT 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 55, 146
ClaI ATCGAT 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 1 cut(s) 311
CviJI RGCY 3 cut(s) 37, 47, 305
CviKI_1 RGCY 3 cut(s) 37, 47, 305
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DraIII CACNNNGTG 2 cut(s) 205, 221
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 55, 146
Eco88I CYCGRG 2 cut(s) 38, 299
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaiI YATR 2 cut(s) 117, 312
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 314
HinfI GANTC 3 cut(s) 102, 244, 295
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 3 cut(s) 7, 51, 317
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 34, 154, 192, 215
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 225
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 2 cut(s) 201, 250
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 20, 197, 253
MluCI AATT 1 cut(s) 66
MlyI GAGTC 2 cut(s) 238, 304
MnlI CCTC 6 cut(s) 34, 37, 219, 222, 258, 295
MseI TTAA 2 cut(s) 234, 270
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 314
PaeR7I CTCGAG 2 cut(s) 38, 299
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 36
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 2 cut(s) 238, 303
PpsI GAGTC 2 cut(s) 238, 303
PspPI GGNCC 2 cut(s) 55, 146
PspXI VCTCGAGB 1 cut(s) 38
PstI CTGCAG 1 cut(s) 36
PvuI CGATCG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 234, 270
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 55, 146
SchI GAGTC 2 cut(s) 238, 304
SetI ASST 1 cut(s) 39
SfaNI GCATC 2 cut(s) 201, 250
SfcI CTRYAG 1 cut(s) 32
Sfr274I CTCGAG 2 cut(s) 38, 299
SinI GGWCC 2 cut(s) 55, 146
SlaI CTCGAG 2 cut(s) 38, 299
SmlI CTYRAG 2 cut(s) 38, 299
SmoI CTYRAG 2 cut(s) 38, 299
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 226
StyI CCWWGG 1 cut(s) 106
TaqI TCGA 3 cut(s) 39, 100, 300
TasI AATT 1 cut(s) 66
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 2 cut(s) 234, 270
Tru9I TTAA 2 cut(s) 234, 270
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 78, 269, 299
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 55, 146
XhoI CTCGAG 2 cut(s) 38, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.